Mock Version: 6.0 Mock Version: 6.0 Mock Version: 6.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f42-build-56984828-6547492/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '05a2e05937eb41f595fa2ffc19b5beb2', '-D', '/var/lib/mock/f42-build-56984828-6547492/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1737331200 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-13.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f42-build-56984828-6547492/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f9a0b5731ee943e3bd589e2cf878a175', '-D', '/var/lib/mock/f42-build-56984828-6547492/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.1ubmp3xh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target ppc64le --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1737331200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.lR89lE + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + test -d /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/rm -rf /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RgKMyL + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd /builddir/build/BUILD/libsonata-0.1.23-build + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-adapt-to-fmt-11.patch + /usr/bin/git apply --index --reject - Checking patch src/node_sets.cpp... Applied patch src/node_sets.cpp cleanly. + GIT_COMMITTER_DATE=@1737331200 + GIT_AUTHOR_DATE=@1737331200 + /usr/bin/git commit -q -m 0006-adapt-to-fmt-11.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.n2CyyD + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.0.1 -- The CXX compiler identification is GNU 15.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:79 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_INSTALL_FULL_SBINDIR CMAKE_INSTALL_SBINDIR INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j8 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j8 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 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Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp [ 5%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o [ 8%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o [ 14%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o [ 17%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c 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/usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp [ 26%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c 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CMakeFiles/sonata_shared.dir/src/config.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp [ 35%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp [ 38%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp [ 41%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 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-Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp [ 50%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp [ 55%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp [ 58%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp [ 61%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp [ 64%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 67%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 67%] Built target sonata_static /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 70%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:430:46: required from here 430 | return Selection::fromValues(raw.data(0), raw.data(raw.shape(0))); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,--dependency-file=CMakeFiles/sonata_shared.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 73%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 76%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/main.cpp [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_edges.cpp cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_node_sets.cpp [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_selection.cpp cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_nodes.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_0()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:51:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 51 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:3: /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void C_A_T_C_H_T_E_S_T_5()’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:391:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 391 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [ 97%] Linking CXX shared module _libsonata.cpython-313-powerpc64le-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -flto -Wl,--dependency-file=CMakeFiles/sonata_python.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-313-powerpc64le-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-313-powerpc64le-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [ 97%] Built target sonata_python [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic -Wl,--dependency-file=CMakeFiles/unittests.dir/link.d CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-tlse8l3e/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-ppc64le-cpython-313 creating build/lib.linux-ppc64le-cpython-313/libsonata copying python/libsonata/__init__.py -> build/lib.linux-ppc64le-cpython-313/libsonata running build_ext installing to build/bdist.linux-ppc64le/wheel running install running install_lib creating build/bdist.linux-ppc64le creating build/bdist.linux-ppc64le/wheel creating build/bdist.linux-ppc64le/wheel/libsonata copying build/lib.linux-ppc64le-cpython-313/libsonata/__init__.py -> build/bdist.linux-ppc64le/wheel/./libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-ppc64le/wheel/./libsonata-0.1.23-py3.13.egg-info running install_scripts creating build/bdist.linux-ppc64le/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-wheel-wtb11k6x/.tmp-2jco49gq/libsonata-0.1.23-cp313-cp313-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-ppc64le/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp313-cp313-linux_ppc64le.whl size=8521 sha256=5f491dabfc8333925165b5a4d7eea659ab23702d54dd272bb0352797a1db2e83 Stored in directory: /builddir/.cache/pip/wheels/4c/00/f7/4a34f1c54e616a8baccb759d4c3d12096f209c7b5f68a68b5e Successfully built libsonata ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + pushd tests/data + /usr/bin/python3 generate.py ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + mkdir -p redhat-linux-build/tests + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0SHr4t + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT ++ dirname /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build + mkdir /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-313-powerpc64le-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_ppc64le.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=libsonata==0.1.23 + '[' -z libsonata==0.1.23 ']' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_ppc64le.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-record + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ cut -f1 '-d ' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-ghost-distinfo + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-13.fc42.ppc64le-pyproject-record --prefix /usr -l libsonata ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + popd + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 0.1.23-13.fc42 --unique-debug-suffix -0.1.23-13.fc42.ppc64le --unique-debug-src-base libsonata-0.1.23-13.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-13.fc42.ppc64le find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j8 /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 28 directories and 50 files, processed 1 inodes, 1 modified (0 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.oovTaa + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j8 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader Start 3: SomaReportReader limits Start 4: SomaReportReader Start 5: ElementReportReader limits Start 6: ElementReportReader Start 7: NodePopulation Start 8: NodePopulationMove 1/30 Test #1: Selection ....................................... Passed 0.01 sec 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 9: NodePopulationSelectAll Start 10: NodePopulationmatchAttributeValues 3/30 Test #4: SomaReportReader ................................ Passed 0.01 sec 4/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t Start 12: NodePopulationmatchAttributeValues - uint8_t Start 13: NodePopulationmatchAttributeValues - int16_t Start 14: NodePopulationmatchAttributeValues - uint16_t 7/30 Test #7: NodePopulation .................................. Passed 0.01 sec 8/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t Start 16: NodePopulationmatchAttributeValues - uint32_t Start 17: NodePopulationmatchAttributeValues - int64_t Start 18: NodePopulationmatchAttributeValues - uint64_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 19: NodeSetParse Start 20: NodeSetBasic Start 21: NodeSetCompound Start 22: NodeSet 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 23: EdgePopulation Start 24: EdgePopulationSelectAll Start 25: EdgePopulation::writeIndices Start 26: EdgeStorage 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec 20/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec 21/30 Test #22: NodeSet ......................................... Passed 0.01 sec Start 27: CircuitConfig Start 28: SimulationConfig Start 29: SONATA 22/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec 23/30 Test #26: EdgeStorage ..................................... Passed 0.01 sec Start 30: unittests 24/30 Test #23: EdgePopulation .................................. Passed 0.02 sec 25/30 Test #20: NodeSetBasic .................................... Passed 0.02 sec 26/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec 28/30 Test #29: SONATA .......................................... Passed 0.01 sec 29/30 Test #28: SimulationConfig ................................ Passed 0.02 sec 30/30 Test #30: unittests ....................................... Passed 0.06 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.12 sec ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + pushd python/tests + export PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/python3.13/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.14.5): #000: ../../src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group major: Symbol table minor: Unable to create file #001: ../../src/H5G.c line 399 in H5G__open_api_common(): unable to open group major: Symbol table minor: Can't open object #002: ../../src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #004: ../../src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #005: ../../src/H5Gint.c line 380 in H5G__open_name(): group not found major: Symbol table minor: Object not found #006: ../../src/H5Gloc.c line 424 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #008: ../../src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #009: ../../src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.089s OK + popd ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-13.fc42.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ogSTlo + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.YnrDbd + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-13.fc42 libsonata(ppc-64) = 0.1.23-13.fc42 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-13.fc42.ppc64le Provides: libsonata-devel = 0.1.23-13.fc42 libsonata-devel(ppc-64) = 0.1.23-13.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.23-13.fc42.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZuUIRR + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.23-build + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-13.fc42 python3-libsonata = 0.1.23-13.fc42 python3-libsonata(ppc-64) = 0.1.23-13.fc42 python3.13-libsonata = 0.1.23-13.fc42 python3.13dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.2()(64bit) ld64.so.2(GLIBC_2.22)(64bit) ld64.so.2(GLIBC_2.23)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-13.fc42.ppc64le Provides: libsonata-debugsource = 0.1.23-13.fc42 libsonata-debugsource(ppc-64) = 0.1.23-13.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-13.fc42.ppc64le Provides: debuginfo(build-id) = 670b7c394032605d6e3c2610966c206312dc7727 libsonata-debuginfo = 0.1.23-13.fc42 libsonata-debuginfo(ppc-64) = 0.1.23-13.fc42 libsonata.so.0.1.23-0.1.23-13.fc42.ppc64le.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(ppc-64) = 0.1.23-13.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-13.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-13.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-13.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-13.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-13.fc42.ppc64le.rpm Child return code was: 0