Mock Version: 5.6 Mock Version: 5.6 Mock Version: 5.6 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'], chrootPath='/var/lib/mock/f42-build-53598702-6424848/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3f38c7ef3f504998b90877e06ed67513', '-D', '/var/lib/mock/f42-build-53598702-6424848/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'], chrootPath='/var/lib/mock/f42-build-53598702-6424848/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '02f66f170b954149847e5be300d4ea53', '-D', '/var/lib/mock/f42-build-53598702-6424848/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.cpzxiT + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + test -d /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/rm -rf /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.yXGw2s + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd /builddir/build/BUILD/python-pypet-0.6.1-build + rm -rf pypet-0.6.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pypet-0.6.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pypet-0.6.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/69.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/70.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/71.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/73.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf pypet.egg-info + find . -type f -name .gitignore -print -delete ./.gitignore ./examples/.gitignore ./examples/example_17_wrapping_an_existing_project/.gitignore ./examples/example_24_large_scale_brian2_simulation/.gitignore ./pylint/.gitignore + mkdir -p _clean + cp -rp examples _clean/examples + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.QHXD4S + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'], chrootPath='/var/lib/mock/f42-build-53598702-6424848/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c972f5913197468ab994e56c0cc50aed', '-D', '/var/lib/mock/f42-build-53598702-6424848/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.9WGTqk + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.43.0) running egg_info creating pypet.egg-info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt writing manifest file 'pypet.egg-info/SOURCES.txt' reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement not satisfied: tables Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement not satisfied: pandas Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: scipy (installed: scipy 1.11.3) + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/top_level.txt' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/LICENSE' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'], chrootPath='/var/lib/mock/f42-build-53598702-6424848/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b0954f31787e464c87468b795c049416', '-D', '/var/lib/mock/f42-build-53598702-6424848/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/python-pypet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5wIXeb + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.43.0) running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: tables (installed: tables 3.10.1) Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: scipy (installed: scipy 1.11.3) + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/top_level.txt' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/LICENSE' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/python-pypet.spec'], chrootPath='/var/lib/mock/f42-build-53598702-6424848/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '54a6563340ab480ebf1a29efea1676c8', '-D', '/var/lib/mock/f42-build-53598702-6424848/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.54_wolzq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/python-pypet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Gpgm0j + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 69.2.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.43.0) running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet-0.6.1.dist-info' Handling tables from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: tables (installed: tables 3.10.1) Handling pandas from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: pandas (installed: pandas 2.2.1) Handling numpy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling scipy from hook generated metadata: Requires-Dist (pypet) Requirement satisfied: scipy (installed: scipy 1.11.3) + cat /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-buildrequires + rm -rfv pypet-0.6.1.dist-info/ removed 'pypet-0.6.1.dist-info/top_level.txt' removed 'pypet-0.6.1.dist-info/METADATA' removed 'pypet-0.6.1.dist-info/LICENSE' removed directory 'pypet-0.6.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.tTk17p + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir Processing /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info writing /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-modern-metadata-xpqjjkfi/pypet-0.6.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pypet Building wheel for pypet (pyproject.toml): started Running command Building wheel for pypet (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pypet copying pypet/__init__.py -> build/lib/pypet copying pypet/_version.py -> build/lib/pypet copying pypet/annotations.py -> build/lib/pypet copying pypet/environment.py -> build/lib/pypet copying pypet/naturalnaming.py -> build/lib/pypet copying pypet/parameter.py -> build/lib/pypet copying pypet/pypetconstants.py -> build/lib/pypet copying pypet/pypetexceptions.py -> build/lib/pypet copying pypet/shareddata.py -> build/lib/pypet copying pypet/slots.py -> build/lib/pypet copying pypet/trajectory.py -> build/lib/pypet copying pypet/pypetlogging.py -> build/lib/pypet copying pypet/storageservice.py -> build/lib/pypet creating build/lib/pypet/brian2 copying pypet/brian2/__init__.py -> build/lib/pypet/brian2 copying pypet/brian2/network.py -> build/lib/pypet/brian2 copying pypet/brian2/parameter.py -> build/lib/pypet/brian2 creating build/lib/pypet/utils copying pypet/utils/__init__.py -> build/lib/pypet/utils copying pypet/utils/comparisons.py -> build/lib/pypet/utils copying pypet/utils/configparsing.py -> build/lib/pypet/utils copying pypet/utils/decorators.py -> build/lib/pypet/utils copying pypet/utils/dynamicimports.py -> build/lib/pypet/utils copying pypet/utils/explore.py -> build/lib/pypet/utils copying pypet/utils/gitintegration.py -> build/lib/pypet/utils copying pypet/utils/hdf5compression.py -> build/lib/pypet/utils copying pypet/utils/helpful_classes.py -> build/lib/pypet/utils copying pypet/utils/helpful_functions.py -> build/lib/pypet/utils copying pypet/utils/mpwrappers.py -> build/lib/pypet/utils copying pypet/utils/pypettest.py -> build/lib/pypet/utils copying pypet/utils/siginthandling.py -> build/lib/pypet/utils copying pypet/utils/storagefactory.py -> build/lib/pypet/utils copying pypet/utils/trajectory_utils.py -> build/lib/pypet/utils creating build/lib/pypet/tests copying pypet/tests/__init__.py -> build/lib/pypet/tests copying pypet/tests/_atworema.py -> build/lib/pypet/tests copying pypet/tests/all_examples.py -> build/lib/pypet/tests copying pypet/tests/all_multi_core_tests.py -> build/lib/pypet/tests copying pypet/tests/all_single_core_tests.py -> build/lib/pypet/tests copying pypet/tests/all_tests.py -> build/lib/pypet/tests copying pypet/tests/coverage_run.py -> build/lib/pypet/tests copying pypet/tests/scoop_run.py -> build/lib/pypet/tests copying pypet/tests/test_all_nose.py -> build/lib/pypet/tests creating build/lib/pypet/tests/unittests copying pypet/tests/unittests/__init__.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/annotations_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/configparse_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/link_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/module_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/mpwrappers_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/parameter_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/pypetlogging_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/shared_data_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/trajectory_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/utils_test.py -> build/lib/pypet/tests/unittests copying pypet/tests/unittests/storage_test.py -> build/lib/pypet/tests/unittests creating build/lib/pypet/tests/integration copying pypet/tests/integration/__init__.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/envSCOOPdebug.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_scoop_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/environment_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/git_check.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/link_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/link_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/logging_multiproc_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/logging_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/merge_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/pipeline_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/removal_and_continue_test.py -> build/lib/pypet/tests/integration copying pypet/tests/integration/shared_data_test.py -> build/lib/pypet/tests/integration creating build/lib/pypet/tests/profiling copying pypet/tests/profiling/__init__.py -> build/lib/pypet/tests/profiling copying pypet/tests/profiling/creating_run_table.py -> build/lib/pypet/tests/profiling copying pypet/tests/profiling/profiling.py -> build/lib/pypet/tests/profiling creating build/lib/pypet/tests/testutils copying pypet/tests/testutils/__init__.py -> build/lib/pypet/tests/testutils copying pypet/tests/testutils/data.py -> build/lib/pypet/tests/testutils copying pypet/tests/testutils/ioutils.py -> build/lib/pypet/tests/testutils creating build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/__init__.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/brian2_monitor_test.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/module_test.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/run_a_brian2_network.py -> build/lib/pypet/tests/unittests/brian2tests copying pypet/tests/unittests/brian2tests/brian2_parameter_test.py -> build/lib/pypet/tests/unittests/brian2tests creating build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/__init__.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/another_network_test.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/hdf5_brian2_test.py -> build/lib/pypet/tests/integration/brian2tests copying pypet/tests/integration/brian2tests/network_test.py -> build/lib/pypet/tests/integration/brian2tests creating build/lib/pypet/logging copying pypet/logging/debug.ini -> build/lib/pypet/logging copying pypet/logging/default.ini -> build/lib/pypet/logging copying pypet/logging/env_config_test.ini -> build/lib/pypet/logging copying pypet/logging/test.ini -> build/lib/pypet/logging creating build/lib/pypet/tests/testdata copying pypet/tests/testdata/pypet_v0_1b_6.hdf5 -> build/lib/pypet/tests/testdata installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/__init__.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/_version.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/annotations.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/environment.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/naturalnaming.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/parameter.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/pypetconstants.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/pypetexceptions.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/shareddata.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/slots.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/trajectory.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/pypetlogging.py -> build/bdist.linux-x86_64/wheel/pypet copying build/lib/pypet/storageservice.py -> build/bdist.linux-x86_64/wheel/pypet creating build/bdist.linux-x86_64/wheel/pypet/brian2 copying build/lib/pypet/brian2/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/brian2 copying build/lib/pypet/brian2/network.py -> build/bdist.linux-x86_64/wheel/pypet/brian2 copying build/lib/pypet/brian2/parameter.py -> build/bdist.linux-x86_64/wheel/pypet/brian2 creating build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/comparisons.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/configparsing.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/decorators.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/dynamicimports.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/explore.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/gitintegration.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/hdf5compression.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/helpful_classes.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/helpful_functions.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/mpwrappers.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/pypettest.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/siginthandling.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/storagefactory.py -> build/bdist.linux-x86_64/wheel/pypet/utils copying build/lib/pypet/utils/trajectory_utils.py -> build/bdist.linux-x86_64/wheel/pypet/utils creating build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/_atworema.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/all_examples.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/all_multi_core_tests.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/all_single_core_tests.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/all_tests.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/coverage_run.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/scoop_run.py -> build/bdist.linux-x86_64/wheel/pypet/tests copying build/lib/pypet/tests/test_all_nose.py -> build/bdist.linux-x86_64/wheel/pypet/tests creating build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/annotations_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/configparse_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/link_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/module_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/mpwrappers_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/parameter_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/pypetlogging_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/shared_data_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/trajectory_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/utils_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests copying build/lib/pypet/tests/unittests/storage_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests creating build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/brian2_monitor_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/module_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/run_a_brian2_network.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests copying build/lib/pypet/tests/unittests/brian2tests/brian2_parameter_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/unittests/brian2tests creating build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/envSCOOPdebug.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/environment_multiproc_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/environment_scoop_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/environment_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/git_check.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/link_multiproc_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/link_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/logging_multiproc_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/logging_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/merge_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/pipeline_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/removal_and_continue_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration copying build/lib/pypet/tests/integration/shared_data_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration creating build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/another_network_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/hdf5_brian2_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests copying build/lib/pypet/tests/integration/brian2tests/network_test.py -> build/bdist.linux-x86_64/wheel/pypet/tests/integration/brian2tests creating build/bdist.linux-x86_64/wheel/pypet/tests/profiling copying build/lib/pypet/tests/profiling/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/profiling copying build/lib/pypet/tests/profiling/creating_run_table.py -> build/bdist.linux-x86_64/wheel/pypet/tests/profiling copying build/lib/pypet/tests/profiling/profiling.py -> build/bdist.linux-x86_64/wheel/pypet/tests/profiling creating build/bdist.linux-x86_64/wheel/pypet/tests/testutils copying build/lib/pypet/tests/testutils/__init__.py -> build/bdist.linux-x86_64/wheel/pypet/tests/testutils copying build/lib/pypet/tests/testutils/data.py -> build/bdist.linux-x86_64/wheel/pypet/tests/testutils copying build/lib/pypet/tests/testutils/ioutils.py -> build/bdist.linux-x86_64/wheel/pypet/tests/testutils creating build/bdist.linux-x86_64/wheel/pypet/tests/testdata copying build/lib/pypet/tests/testdata/pypet_v0_1b_6.hdf5 -> build/bdist.linux-x86_64/wheel/pypet/tests/testdata creating build/bdist.linux-x86_64/wheel/pypet/logging copying build/lib/pypet/logging/debug.ini -> build/bdist.linux-x86_64/wheel/pypet/logging copying build/lib/pypet/logging/default.ini -> build/bdist.linux-x86_64/wheel/pypet/logging copying build/lib/pypet/logging/env_config_test.ini -> build/bdist.linux-x86_64/wheel/pypet/logging copying build/lib/pypet/logging/test.ini -> build/bdist.linux-x86_64/wheel/pypet/logging running install_egg_info running egg_info writing pypet.egg-info/PKG-INFO writing dependency_links to pypet.egg-info/dependency_links.txt writing requirements to pypet.egg-info/requires.txt writing top-level names to pypet.egg-info/top_level.txt reading manifest file 'pypet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pypet.egg-info/SOURCES.txt' Copying pypet.egg-info to build/bdist.linux-x86_64/wheel/pypet-0.6.1-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pypet-0.6.1.dist-info/WHEEL creating '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir/pip-wheel-dx79cutv/.tmp-m371th53/pypet-0.6.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pypet/__init__.py' adding 'pypet/_version.py' adding 'pypet/annotations.py' adding 'pypet/environment.py' adding 'pypet/naturalnaming.py' adding 'pypet/parameter.py' adding 'pypet/pypetconstants.py' adding 'pypet/pypetexceptions.py' adding 'pypet/pypetlogging.py' adding 'pypet/shareddata.py' adding 'pypet/slots.py' adding 'pypet/storageservice.py' adding 'pypet/trajectory.py' adding 'pypet/brian2/__init__.py' adding 'pypet/brian2/network.py' adding 'pypet/brian2/parameter.py' adding 'pypet/logging/debug.ini' adding 'pypet/logging/default.ini' adding 'pypet/logging/env_config_test.ini' adding 'pypet/logging/test.ini' adding 'pypet/tests/__init__.py' adding 'pypet/tests/_atworema.py' adding 'pypet/tests/all_examples.py' adding 'pypet/tests/all_multi_core_tests.py' adding 'pypet/tests/all_single_core_tests.py' adding 'pypet/tests/all_tests.py' adding 'pypet/tests/coverage_run.py' adding 'pypet/tests/scoop_run.py' adding 'pypet/tests/test_all_nose.py' adding 'pypet/tests/integration/__init__.py' adding 'pypet/tests/integration/envSCOOPdebug.py' adding 'pypet/tests/integration/environment_multiproc_test.py' adding 'pypet/tests/integration/environment_scoop_test.py' adding 'pypet/tests/integration/environment_test.py' adding 'pypet/tests/integration/git_check.py' adding 'pypet/tests/integration/link_multiproc_test.py' adding 'pypet/tests/integration/link_test.py' adding 'pypet/tests/integration/logging_multiproc_test.py' adding 'pypet/tests/integration/logging_test.py' adding 'pypet/tests/integration/merge_test.py' adding 'pypet/tests/integration/pipeline_test.py' adding 'pypet/tests/integration/removal_and_continue_test.py' adding 'pypet/tests/integration/shared_data_test.py' adding 'pypet/tests/integration/brian2tests/__init__.py' adding 'pypet/tests/integration/brian2tests/another_network_test.py' adding 'pypet/tests/integration/brian2tests/hdf5_brian2_test.py' adding 'pypet/tests/integration/brian2tests/network_test.py' adding 'pypet/tests/profiling/__init__.py' adding 'pypet/tests/profiling/creating_run_table.py' adding 'pypet/tests/profiling/profiling.py' adding 'pypet/tests/testdata/pypet_v0_1b_6.hdf5' adding 'pypet/tests/testutils/__init__.py' adding 'pypet/tests/testutils/data.py' adding 'pypet/tests/testutils/ioutils.py' adding 'pypet/tests/unittests/__init__.py' adding 'pypet/tests/unittests/annotations_test.py' adding 'pypet/tests/unittests/configparse_test.py' adding 'pypet/tests/unittests/link_test.py' adding 'pypet/tests/unittests/module_test.py' adding 'pypet/tests/unittests/mpwrappers_test.py' adding 'pypet/tests/unittests/parameter_test.py' adding 'pypet/tests/unittests/pypetlogging_test.py' adding 'pypet/tests/unittests/shared_data_test.py' adding 'pypet/tests/unittests/storage_test.py' adding 'pypet/tests/unittests/trajectory_test.py' adding 'pypet/tests/unittests/utils_test.py' adding 'pypet/tests/unittests/brian2tests/__init__.py' adding 'pypet/tests/unittests/brian2tests/brian2_monitor_test.py' adding 'pypet/tests/unittests/brian2tests/brian2_parameter_test.py' adding 'pypet/tests/unittests/brian2tests/module_test.py' adding 'pypet/tests/unittests/brian2tests/run_a_brian2_network.py' adding 'pypet/utils/__init__.py' adding 'pypet/utils/comparisons.py' adding 'pypet/utils/configparsing.py' adding 'pypet/utils/decorators.py' adding 'pypet/utils/dynamicimports.py' adding 'pypet/utils/explore.py' adding 'pypet/utils/gitintegration.py' adding 'pypet/utils/hdf5compression.py' adding 'pypet/utils/helpful_classes.py' adding 'pypet/utils/helpful_functions.py' adding 'pypet/utils/mpwrappers.py' adding 'pypet/utils/pypettest.py' adding 'pypet/utils/siginthandling.py' adding 'pypet/utils/storagefactory.py' adding 'pypet/utils/trajectory_utils.py' adding 'pypet-0.6.1.dist-info/LICENSE' adding 'pypet-0.6.1.dist-info/METADATA' adding 'pypet-0.6.1.dist-info/WHEEL' adding 'pypet-0.6.1.dist-info/top_level.txt' adding 'pypet-0.6.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pypet (pyproject.toml): finished with status 'done' Created wheel for pypet: filename=pypet-0.6.1-py3-none-any.whl size=344991 sha256=ae3c09cc4810fa39fb982d5c8ee87f33f60a73d57357e4b3483aa04c51481c07 Stored in directory: /builddir/.cache/pip/wheels/86/b8/dd/a40118f5ac504c34af376e0fe5f13bf297c2bead9c1ed6d6bc Successfully built pypet + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + /usr/bin/make -O -j48 V=1 VERBOSE=1 -C doc latex SPHINXOPTS=-j48 make: Entering directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc' sphinx-build -b latex -d build/doctrees -j48 source build/latex Running Sphinx v7.3.7 making output directory... done [autosummary] generating autosummary for: cookbook/brian.rst, cookbook/environment.rst, cookbook/parameter.rst, cookbook/trajectory.rst, examplesdoc/example_01.rst, examplesdoc/example_02.rst, examplesdoc/example_03.rst, examplesdoc/example_04.rst, examplesdoc/example_05.rst, examplesdoc/example_06.rst, ..., pypetdoc/brian2networkdoc.rst, pypetdoc/brian2parameterdoc.rst, pypetdoc/environmentdoc.rst, pypetdoc/parameterdoc.rst, pypetdoc/pypetconstantsdoc.rst, pypetdoc/pypetexceptionsdoc.rst, pypetdoc/slotsloggingdoc.rst, pypetdoc/storageservicedoc.rst, pypetdoc/trajectorydoc.rst, pypetdoc/utilsdoc.rst building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 51 added, 0 changed, 0 removed reading sources... 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[ 41%] examplesdoc/example_19 reading sources... [ 43%] examplesdoc/example_20 reading sources... [ 45%] examplesdoc/example_21 reading sources... [ 47%] examplesdoc/example_22 reading sources... [ 49%] examplesdoc/example_23 reading sources... [ 51%] examplesdoc/example_24 reading sources... [ 53%] index reading sources... [ 55%] latex reading sources... [ 57%] latex_contact_license reading sources... [ 59%] manual/changelog reading sources... [ 61%] manual/code_toc reading sources... [ 63%] manual/cookbook_toc reading sources... [ 65%] manual/examples_toc reading sources... [ 67%] manual/faqs reading sources... [ 69%] manual/introduction reading sources... [ 71%] manual/manual_toc reading sources... [ 73%] manual/misc reading sources... [ 75%] manual/misc_toc reading sources... [ 76%] manual/optimization_tips reading sources... [ 78%] manual/tutorial reading sources... [ 80%] pypetdoc/annotationsdoc reading sources... [ 82%] pypetdoc/brian2networkdoc reading sources... [ 84%] pypetdoc/brian2parameterdoc reading sources... [ 86%] pypetdoc/environmentdoc reading sources... [ 88%] pypetdoc/parameterdoc reading sources... [ 90%] pypetdoc/pypetconstantsdoc reading sources... [ 92%] pypetdoc/pypetexceptionsdoc reading sources... [ 94%] pypetdoc/slotsloggingdoc reading sources... [ 96%] pypetdoc/storageservicedoc reading sources... [ 98%] pypetdoc/trajectorydoc reading sources... [100%] pypetdoc/utilsdoc looking for now-outdated files... none found pickling environment... done checking consistency... done copying TeX support files... processing pypet.tex... latex manual/manual_toc manual/introduction manual/tutorial manual/cookbook_toc cookbook/trajectory cookbook/parameter cookbook/environment cookbook/brian manual/examples_toc examplesdoc/example_01 examplesdoc/example_02 examplesdoc/example_14 examplesdoc/example_15 examplesdoc/example_04 examplesdoc/example_21 examplesdoc/example_09 examplesdoc/example_13 examplesdoc/example_17 examplesdoc/example_18 examplesdoc/example_03 examplesdoc/example_05 examplesdoc/example_06 examplesdoc/example_08 examplesdoc/example_10 examplesdoc/example_12 examplesdoc/example_16 examplesdoc/example_19 examplesdoc/example_20 examplesdoc/example_22 examplesdoc/example_23 examplesdoc/example_24 manual/optimization_tips manual/faqs manual/misc_toc manual/misc manual/changelog manual/code_toc pypetdoc/environmentdoc pypetdoc/trajectorydoc pypetdoc/parameterdoc pypetdoc/annotationsdoc pypetdoc/utilsdoc pypetdoc/pypetexceptionsdoc pypetdoc/pypetconstantsdoc pypetdoc/slotsloggingdoc pypetdoc/storageservicedoc pypetdoc/brian2parameterdoc pypetdoc/brian2networkdoc latex_contact_license resolving references... done writing... done copying images... [ 12%] figures/layout.png copying images... [ 25%] figures/example_01.png copying images... [ 38%] figures/experiment_phases.png copying images... [ 50%] figures/tutorial.png copying images... [ 62%] figures/network_managing.png copying images... [ 75%] figures/main_script.png copying images... [ 88%] figures/network_run.png copying images... [100%] bbd_2013_poster/meyer_bbd_2013_small.png build succeeded, 2 warnings. The LaTeX files are in build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Build finished; the LaTeX files are in build/latex. Run `make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). make: Leaving directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc' WARNING: html_static_path entry '_static' does not exist /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/source/latex.rst: WARNING: document isn't included in any toctree + /usr/bin/make -O -j48 V=1 VERBOSE=1 -C doc/build/latex LATEXMKOPTS=-quiet make: Entering directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex' latexmk -pdf -dvi- -ps- -quiet 'pypet.tex' Rc files read: /etc/latexmkrc latexmkrc Latexmk: Run number 1 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet Latexmk: Run number 1 of rule 'makeindex pypet.idx' Latexmk: Run number 2 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet Latexmk: Run number 3 of rule 'pdflatex' This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'pypet.log' Have index file 'pypet.idx', pypet.ind pypet make: Leaving directory '/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IYOvJq + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + '[' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build + mkdir /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 ++ ls /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir/pypet-0.6.1-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pypet==0.6.1 + '[' -z pypet==0.6.1 ']' + TMPDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir pypet==0.6.1 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pyproject-wheeldir Processing ./pyproject-wheeldir/pypet-0.6.1-py3-none-any.whl Installing collected packages: pypet Successfully installed pypet-0.6.1 + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --record /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD --output /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD removed '/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/REQUESTED removed '/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet-0.6.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-record --prefix /usr -l pypet + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j48 Bytecompiling .py files below /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j48 /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/network.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/brian2/__pycache__/parameter.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/coverage_run.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_examples.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/parameter_test.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/all_multi_core_tests.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/storage_test.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/parameter_test.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/scoop_run.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/__pycache__/test_all_nose.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/explore.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/storagefactory.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/trajectory_utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/gitintegration.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/hdf5compression.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/comparisons.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/dynamicimports.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/configparsing.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/pypettest.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/_version.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/slots.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/siginthandling.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetexceptions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/helpful_classes.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetconstants.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/annotations.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/helpful_functions.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/pypetlogging.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/decorators.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/shareddata.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/parameter.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/__pycache__/trajectory_test.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/environment.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/naturalnaming.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/__pycache__/mpwrappers.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/trajectory.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/__pycache__/storageservice.cpython-313.pyc: rewriting with normalized contents Scanned 28 directories and 253 files, processed 86 inodes, 86 modified (10 replaced + 76 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-pypet-0.6.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.oMRDsE + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pypet-0.6.1 + '[' '!' -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-pypet-0.6.1-build/python-pypet-0.6.1-7.fc42.x86_64-pyproject-modules -e '*tests*' Check import: pypet Check import: pypet.annotations Check import: pypet.brian2 Check import: pypet.brian2.network Check import: pypet.brian2.parameter Check import: pypet.environment Check import: pypet.naturalnaming Check import: pypet.parameter Check import: pypet.pypetconstants Check import: pypet.pypetexceptions Check import: pypet.pypetlogging Check import: pypet.shareddata Check import: pypet.slots Check import: pypet.storageservice Check import: pypet.trajectory Check import: pypet.utils Check import: pypet.utils.comparisons Check import: pypet.utils.configparsing Check import: pypet.utils.decorators Check import: pypet.utils.dynamicimports Check import: pypet.utils.explore Check import: pypet.utils.gitintegration Check import: pypet.utils.hdf5compression Check import: pypet.utils.helpful_classes Check import: pypet.utils.helpful_functions Check import: pypet.utils.mpwrappers Check import: pypet.utils.pypettest Check import: pypet.utils.siginthandling Check import: pypet.utils.storagefactory Check import: pypet.utils.trajectory_utils + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=48 + /usr/bin/python3 pypet/tests/all_tests.py test_annotations_insert (unittests.annotations_test.AnnotationsTest.test_annotations_insert) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_attribute_deletion (unittests.annotations_test.AnnotationsTest.test_attribute_deletion) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_f_get_errors (unittests.annotations_test.AnnotationsTest.test_f_get_errors) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.ggg` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_f_set_numbering (unittests.annotations_test.AnnotationsTest.test_f_set_numbering) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_annotations (unittests.annotations_test.AnnotationsTest.test_get_annotations) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_item (unittests.annotations_test.AnnotationsTest.test_get_item) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_get_item_no_copy (unittests.annotations_test.AnnotationsTest.test_get_item_no_copy) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_item_deletion (unittests.annotations_test.AnnotationsTest.test_item_deletion) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_pickling (unittests.annotations_test.AnnotationsTest.test_pickling) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_single_get_and_getattr_and_setattr (unittests.annotations_test.AnnotationsTest.test_single_get_and_getattr_and_setattr) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.test2` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_storage_and_loading (unittests.annotations_test.AnnotationsTest.test_storage_and_loading) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Opening HDF5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5` in mode `a` with trajectory `Annotations` INFO:pypet.storageservice.HDF5StorageService:Start storing Trajectory `Annotations`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `config`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.pandas_format`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.shuffle`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.fletcher32`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.encoding`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.complib`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.complevel`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.derived_parameters_per_run`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.results_per_run`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.purge_duplicate_comments`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.results_summary`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.derived_parameters_summary`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.explored_parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.results_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.derived_parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.parameters_overview`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `config.hdf5.overview.config_overview`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `results`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `results.testres`. INFO:pypet.storageservice.HDF5StorageService:Storing branch `parameters`. DEBUG:pypet.storageservice.HDF5StorageService:Storing `parameters.testgroup.testparam`. INFO:pypet.storageservice.HDF5StorageService:Finished storing Trajectory `Annotations`. DEBUG:pypet.storageservice.HDF5StorageService:Closing HDF5 file DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Opening HDF5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5` in mode `r` with trajectory `Annotations` INFO:pypet.storageservice.HDF5StorageService:Loading trajectory `Annotations`. INFO:pypet.storageservice.HDF5StorageService:Loading branch `config` in mode `2`. INFO:pypet.storageservice.HDF5StorageService:Loading branch `parameters` in mode `2`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Loading data of parameters.testgroup.testparam INFO:pypet.storageservice.HDF5StorageService:Loading branch `results` in mode `2`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.storageservice.HDF5StorageService:Loading data of results.testres DEBUG:pypet.storageservice.HDF5StorageService:Closing HDF5 file Level 21:root:REMOVING ALL TEMPORARY DATA ok test_to_str (unittests.annotations_test.AnnotationsTest.test_to_str) ... DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$', 'crun')`. DEBUG:pypet.trajectory.Trajectory:Added wildcard function `('$set', 'crunset')`. INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `/tmp/tmp_pypet_tests/experiments/tests/HDF5/annotations.hdf5`. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.config_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.explored_parameters_overview` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.derived_parameters_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.overview.results_summary` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.purge_duplicate_comments` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.results_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.derived_parameters_per_run` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complevel` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.complib` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.encoding` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.fletcher32` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.shuffle` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `config.hdf5.pandas_format` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `results.testres` to trajectory. DEBUG:pypet.naturalnaming.NaturalNamingInterface:Added `parameters.testgroup.testparam` to trajectory. Level 21:root:REMOVING ALL TEMPORARY DATA ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.ArrayParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.ArrayParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.ArrayParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.ArrayParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.ArrayParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.ArrayParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.ArrayParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.ArrayParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.ArrayParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.ArrayParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.ArrayParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.ArrayParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.ArrayParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.ArrayParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.ArrayParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.ArrayParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.ArrayParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.ArrayParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.ArrayParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.ArrayParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.ArrayParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.ArrayParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.ArrayParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.ArrayParameterTest.test_values_of_same_type) ... ok test_with_pre_run (integration.brian2tests.network_test.Brain2NetworkTest.test_with_pre_run) ... SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! SCOOP NOT running! Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s 300. ms (100%) simulated in < 1s ok test_with_pre_run_single_core (integration.brian2tests.network_test.Brain2NetworkTest.test_with_pre_run_single_core) ... Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s Starting simulation at t=100. ms for a duration of 300. ms 300. ms (100%) simulated in < 1s ok test_without_pre_run (integration.brian2tests.network_test.Brain2NetworkTest.test_without_pre_run) ... Starting simulation at t=0. s for a duration of 300. ms Starting simulation at t=0. s for a duration of 300. ms 300. ms (100%) simulated in < 1s 300. ms (100%) simulated in < 1s ok test_net (integration.brian2tests.another_network_test.Brian2FullNetworkTest.test_net) ... Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s Starting simulation at t=0. s for a duration of 250. ms 250. ms (100%) simulated in < 1s ok test_get_unit_fast (unittests.brian2tests.brian2_parameter_test.Brian2GetUnitFastTest.test_get_unit_fast) ... ok Starting simulation at t=0. s for a duration of 10. ms 10. ms (100%) simulated in < 1s test_Attribute_error_for_get_item (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_contains) ... ok test_deletion (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_dir) ... ok test_emptying (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_emptying) ... ok test_f_get_errors (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_f_to_dict_no_copy) ... ok test_failing_adding_another_monitor (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_failing_adding_another_monitor) ... ok test_get_data (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_get_item) ... ok test_getattr_and_setattr (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_getattr_and_setattr) ... ok test_iter (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_iter) ... ok test_meta_settings (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_meta_settings) ... ok test_natural_naming (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_natural_naming) ... ok test_pickling (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_reject_outer_data_structure) ... ok test_rename (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_rename) ... ok test_set_item_via_number (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_set_item_via_number) ... ok test_set_numbering (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_set_numbering) ... ok test_storage_and_loading (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.brian2tests.brian2_monitor_test.Brian2MonitorTest.test_warning) ... ok test_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_expanding) ... ok test_exploration (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_exploration) ... ok test_loading_and_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_loading_and_expanding) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_meta_settings) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_storage_and_loading) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ParameterDuplicatesInStoreTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_equal_values) ... ok test_expanding (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_exploration) ... ok test_false_on_values_not_of_same_type (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_false_on_values_not_of_same_type) ... ok test_get_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_get_item) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_store_load_with_hdf5_no_data) ... ok test_supports (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_supports) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.brian2tests.brian2_parameter_test.Brian2ParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_contains) ... ok test_deletion (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_dir) ... ok test_emptying (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_emptying) ... ok test_f_get_errors (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_get_data) ... ok test_get_item (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_getattr_and_setattr) ... ok test_illegal_naming (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_illegal_naming) ... ok test_iter (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_iter) ... ok test_meta_settings (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_meta_settings) ... ok test_natural_naming (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_natural_naming) ... ok test_pickling (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_rename) ... ok test_set_item_via_number (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.brian2tests.brian2_parameter_test.Brian2ResultTest.test_warning) ... ok test_hdf5_store_load_monitorresult (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_monitorresult) ... ok test_hdf5_store_load_parameter (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_parameter) ... ok test_hdf5_store_load_result (integration.brian2tests.hdf5_brian2_test.Brian2hdf5Test.test_hdf5_store_load_result) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.CapTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if psutil is installed' test_a_large_run (integration.environment_multiproc_test.CapTest.test_a_large_run) ... skipped 'Only makes sense if psutil is installed' test_errors (integration.environment_multiproc_test.CapTest.test_errors) ... skipped 'Only makes sense if psutil is installed' test_expand (integration.environment_multiproc_test.CapTest.test_expand) ... skipped 'Only makes sense if psutil is installed' test_expand_after_reload (integration.environment_multiproc_test.CapTest.test_expand_after_reload) ... skipped 'Only makes sense if psutil is installed' test_file_overwriting (integration.environment_multiproc_test.CapTest.test_file_overwriting) ... skipped 'Only makes sense if psutil is installed' test_just_one_run (integration.environment_multiproc_test.CapTest.test_just_one_run) ... skipped 'Only makes sense if psutil is installed' test_niceness (integration.environment_multiproc_test.CapTest.test_niceness) ... skipped 'Only makes sense if psutil is installed' test_purge_duplicate_comments (integration.environment_multiproc_test.CapTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if psutil is installed' test_run (integration.environment_multiproc_test.CapTest.test_run) ... skipped 'Only makes sense if psutil is installed' test_run_complex (integration.environment_multiproc_test.CapTest.test_run_complex) ... skipped 'Only makes sense if psutil is installed' test_store_form_tuple (integration.environment_multiproc_test.CapTest.test_store_form_tuple) ... skipped 'Only makes sense if psutil is installed' test_store_single_group (integration.environment_multiproc_test.CapTest.test_store_single_group) ... skipped 'Only makes sense if psutil is installed' test_switch_ON_large_tables (integration.environment_multiproc_test.CapTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if psutil is installed' test_switch_off_all_tables (integration.environment_multiproc_test.CapTest.test_switch_off_all_tables) ... skipped 'Only makes sense if psutil is installed' test_switch_on_all_comments (integration.environment_multiproc_test.CapTest.test_switch_on_all_comments) ... skipped 'Only makes sense if psutil is installed' test_time_display_of_loading (integration.environment_multiproc_test.CapTest.test_time_display_of_loading) ... skipped 'Only makes sense if psutil is installed' test_two_runs (integration.environment_multiproc_test.CapTest.test_two_runs) ... skipped 'Only makes sense if psutil is installed' test_cartesian_product (unittests.utils_test.CartesianTest.test_cartesian_product) ... ok test_cartesian_product_combined_params (unittests.utils_test.CartesianTest.test_cartesian_product_combined_params) ... ok test_parsing (unittests.configparse_test.ConfigParseTest.test_parsing) ... MainProcess STDOUT CRITICAL Established redirection of `stdout`. ok test_continueing (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_mp (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_mp) ... skipped 'Only makes sense if dill is installed' test_continueing_mp_custom (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_mp_custom) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueMPPoolTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueMPPoolTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueMPPoolTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_continueing (integration.removal_and_continue_test.ContinueMPTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_mp (integration.removal_and_continue_test.ContinueMPTest.test_continueing_mp) ... skipped 'Only makes sense if dill is installed' test_continueing_mp_custom (integration.removal_and_continue_test.ContinueMPTest.test_continueing_mp_custom) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueMPTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueMPTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueMPTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_continueing (integration.removal_and_continue_test.ContinueTest.test_continueing) ... skipped 'Only makes sense if dill is installed' test_continueing_remove_completed (integration.removal_and_continue_test.ContinueTest.test_continueing_remove_completed) ... skipped 'Only makes sense if dill is installed' test_multiple_storage_and_loading (integration.removal_and_continue_test.ContinueTest.test_multiple_storage_and_loading) ... skipped 'Only makes sense if dill is installed' test_removal (integration.removal_and_continue_test.ContinueTest.test_removal) ... skipped 'Only makes sense if dill is installed' test_NOT_purge_duplicate_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (pypet.tests.integration.environment_test.EnvironmentTest.test_a_large_run) ... ok test_errors (pypet.tests.integration.environment_test.EnvironmentTest.test_errors) ... ok test_expand (pypet.tests.integration.environment_test.EnvironmentTest.test_expand) ... ok test_expand_after_reload (pypet.tests.integration.environment_test.EnvironmentTest.test_expand_after_reload) ... ok test_file_overwriting (pypet.tests.integration.environment_test.EnvironmentTest.test_file_overwriting) ... ok test_just_one_run (pypet.tests.integration.environment_test.EnvironmentTest.test_just_one_run) ... ok test_niceness (pypet.tests.integration.environment_test.EnvironmentTest.test_niceness) ... ok test_purge_duplicate_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:42:39,705 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__5859_2024_09_12_23h42m39s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (pypet.tests.integration.environment_test.EnvironmentTest.test_run) ... ok test_run_complex (pypet.tests.integration.environment_test.EnvironmentTest.test_run_complex) ... ok test_store_form_tuple (pypet.tests.integration.environment_test.EnvironmentTest.test_store_form_tuple) ... ok test_store_single_group (pypet.tests.integration.environment_test.EnvironmentTest.test_store_single_group) ... MainProcess 2024-09-12 23:42:47,101 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (pypet.tests.integration.environment_test.EnvironmentTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (pypet.tests.integration.environment_test.EnvironmentTest.test_time_display_of_loading) ... ok test_two_runs (pypet.tests.integration.environment_test.EnvironmentTest.test_two_runs) ... ok test_full_store (integration.environment_test.FullStorageTest.test_full_store) ... ok test_run (pypet.tests.integration.link_test.LinkEnvironmentTest.test_run) ... ok test_merge_with_linked_derived_parameter (integration.link_test.LinkMergeTest.test_merge_with_linked_derived_parameter) ... ok test_remerging (integration.link_test.LinkMergeTest.test_remerging) ... ok test_find_in_all_runs_with_links (unittests.link_test.LinkTrajectoryTests.test_find_in_all_runs_with_links) ... ok test_get_all_not_links (unittests.link_test.LinkTrajectoryTests.test_get_all_not_links) ... ok test_iteration_failure (unittests.link_test.LinkTrajectoryTests.test_iteration_failure) ... ok test_link_creation (unittests.link_test.LinkTrajectoryTests.test_link_creation) ... Failed adding `test` under `parameters`. Failed adding `circle1` under ``. ok test_link_deletion (unittests.link_test.LinkTrajectoryTests.test_link_deletion) ... ok test_link_of_link (unittests.link_test.LinkTrajectoryTests.test_link_of_link) ... ok test_link_removal (unittests.link_test.LinkTrajectoryTests.test_link_removal) ... ok test_links_according_to_run (unittests.link_test.LinkTrajectoryTests.test_links_according_to_run) ... ok test_not_getting_links (unittests.link_test.LinkTrajectoryTests.test_not_getting_links) ... ok test_storage_and_loading (unittests.link_test.LinkTrajectoryTests.test_storage_and_loading) ... ok test_pickling (unittests.pypetlogging_test.LoggingManagerTest.test_pickling) ... ok test_disable (pypet.tests.integration.logging_test.LoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter ok test_file_renaming (pypet.tests.integration.logging_test.LoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (pypet.tests.integration.logging_test.LoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (pypet.tests.integration.logging_test.LoggingTest.test_logfile_creation_with_errors) ... MainProcess 2024-09-12 23:43:10,697 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,697 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,700 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,707 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,707 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,710 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,716 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,716 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,719 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,726 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,726 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,736 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,736 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,739 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,745 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,746 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,749 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:10,755 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:10,755 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:10,758 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logfile_old_way_creation_with_errors (pypet.tests.integration.logging_test.LoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logfile_old_way_disabling_mp_log (pypet.tests.integration.logging_test.LoggingTest.test_logfile_old_way_disabling_mp_log) ... MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.ERROR ERROR ERROR_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress (pypet.tests.integration.logging_test.LoggingTest.test_logging_show_progress) ... MainProcess 2024-09-12 23:43:11,901 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% MainProcess 2024-09-12 23:43:11,901 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,901 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,905 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,911 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,911 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,911 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,914 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,920 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,921 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,921 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,924 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,930 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,931 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,931 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,934 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,940 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,940 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,940 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,943 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,950 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,950 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,950 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,953 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,959 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:11,960 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:11,960 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:11,963 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:11,969 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (pypet.tests.integration.logging_test.LoggingTest.test_logging_show_progress_print) ... MainProcess 2024-09-12 23:43:12,281 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:43:12,306 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% MainProcess 2024-09-12 23:43:12,307 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,307 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,310 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,316 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,317 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,317 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,320 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,326 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,326 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,327 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,329 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,336 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,336 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,336 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,339 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,345 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,346 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,346 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,349 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,355 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,356 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,356 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,359 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,365 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 MainProcess 2024-09-12 23:43:12,365 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:43:12,365 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:43:12,368 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:12,375 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (pypet.tests.integration.logging_test.LoggingTest.test_logging_stdout) ... MainProcess 2024-09-12 23:43:12,686 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:43:12,714 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-09-12 23:43:12,717 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:43:13,143 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (pypet.tests.integration.logging_test.LoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_init_method (unittests.utils_test.MatchingkwargsTest.test_init_method) ... ok test_kwargs (unittests.utils_test.MatchingkwargsTest.test_kwargs) ... ok test_more_than_def (unittests.utils_test.MatchingkwargsTest.test_more_than_def) ... ok test_more_than_def_args (unittests.utils_test.MatchingkwargsTest.test_more_than_def_args) ... ok test_no_match_no_init (unittests.utils_test.MatchingkwargsTest.test_no_match_no_init) ... ok test_basic_within_same_file_and_skipping_duplicates_which_leads_to_one_reamianing (integration.merge_test.MergeTest.test_basic_within_same_file_and_skipping_duplicates_which_leads_to_one_reamianing) ... ok test_basic_within_same_file_and_skipping_duplicates_which_will_be_all (integration.merge_test.MergeTest.test_basic_within_same_file_and_skipping_duplicates_which_will_be_all) ... ok test_basic_within_separate_file_and_skipping_duplicates_which_leads_to_one_reamianing (integration.merge_test.MergeTest.test_basic_within_separate_file_and_skipping_duplicates_which_leads_to_one_reamianing) ... ok test_merge_basic_with_separate_files_only_adding_more_trials (integration.merge_test.MergeTest.test_merge_basic_with_separate_files_only_adding_more_trials) ... ok test_merge_basic_with_separate_files_only_adding_more_trials_slow_merge (integration.merge_test.MergeTest.test_merge_basic_with_separate_files_only_adding_more_trials_slow_merge) ... ok test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes) ... ok test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes_test_backup (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_copy_nodes_test_backup) ... ok test_merge_basic_within_same_file_only_adding_more_trials_delete_other_trajectory (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_delete_other_trajectory) ... ok test_merge_basic_within_same_file_only_adding_more_trials_move_nodes (integration.merge_test.MergeTest.test_merge_basic_within_same_file_only_adding_more_trials_move_nodes) ... ok test_merging_errors_if_trajs_do_not_match (integration.merge_test.MergeTest.test_merging_errors_if_trajs_do_not_match) ... ok test_merging_trajectories_in_different_subspace (integration.merge_test.MergeTest.test_merging_trajectories_in_different_subspace) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:45:38,324 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__19758_2024_09_12_23h45m38s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_store_single_group) ... MainProcess 2024-09-12 23:45:47,184 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolLocalTest.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:46:21,618 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__34106_2024_09_12_23h46m21s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_store_single_group) ... MainProcess 2024-09-12 23:46:29,749 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolPipeTest.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:47:05,036 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__71871_2024_09_12_23h47m05s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_store_single_group) ... MainProcess 2024-09-12 23:47:14,741 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocFrozenPoolQueueTest.test_two_runs) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:47:38,413 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__79354` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:47:47,061 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__85050` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:47:55,843 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__28930` did NOT complete: `run_00000005, run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_full_copy_is_old_value (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_full_copy_is_old_value) ... ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocFrozenPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_a_large_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed' test_errors (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_errors) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_file_overwriting (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed' test_just_one_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed' test_niceness (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_niceness) ... skipped 'Only makes sense if scoop is installed' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_run (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_run) ... skipped 'Only makes sense if scoop is installed' test_run_complex (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed' test_store_form_tuple (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed' test_store_single_group (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed' test_time_display_of_loading (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed' test_two_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPLocalTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetlockTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocFrozenSCOOPSortNetqueueTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_run (integration.link_multiproc_test.MultiprocLinkLocalTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkLockTest.test_run) ... Disabled redirection of `stdout`. ok test_run (integration.link_multiproc_test.MultiprocLinkNoPoolLockTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkNoPoolQueueTest.test_run) ... ok test_run (integration.link_multiproc_test.MultiprocLinkQueueTest.test_run) ... ok test_disable (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_disable) ... Disabled redirection of `stdout`. WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_creation_with_errors) ... Process-383 2024-09-12 23:48:05,947 pypet.ERROR ERROR ERROR_Test! Process-383 2024-09-12 23:48:05,947 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-384 2024-09-12 23:48:05,952 pypet.ERROR ERROR ERROR_Test! Process-384 2024-09-12 23:48:05,952 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-383 2024-09-12 23:48:05,956 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-385 2024-09-12 23:48:05,957 pypet.ERROR ERROR ERROR_Test! Process-385 2024-09-12 23:48:05,957 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-386 2024-09-12 23:48:05,965 pypet.ERROR ERROR ERROR_Test! Process-386 2024-09-12 23:48:05,966 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-384 2024-09-12 23:48:05,977 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-387 2024-09-12 23:48:05,992 pypet.ERROR ERROR ERROR_Test! Process-387 2024-09-12 23:48:05,992 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-385 2024-09-12 23:48:05,999 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-386 2024-09-12 23:48:06,020 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-388 2024-09-12 23:48:06,021 pypet.ERROR ERROR ERROR_Test! Process-388 2024-09-12 23:48:06,021 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-389 2024-09-12 23:48:06,041 pypet.ERROR ERROR ERROR_Test! Process-389 2024-09-12 23:48:06,041 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-387 2024-09-12 23:48:06,042 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-388 2024-09-12 23:48:06,065 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-389 2024-09-12 23:48:06,087 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:06,489 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logfile_old_way_disabling_mp_log) ... Process-397 pypet.ERROR ERROR ERROR_Test! Process-397 pypet.ERROR ERROR ERROR_Test! Process-397 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-397 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-398 pypet.ERROR ERROR ERROR_Test! Process-398 pypet.ERROR ERROR ERROR_Test! Process-398 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-398 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-397 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-397 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-399 pypet.ERROR ERROR ERROR_Test! Process-399 pypet.ERROR ERROR ERROR_Test! Process-399 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-399 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.ERROR ERROR ERROR_Test! Process-400 pypet.ERROR ERROR ERROR_Test! Process-400 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-398 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-398 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-401 pypet.ERROR ERROR ERROR_Test! Process-401 pypet.ERROR ERROR ERROR_Test! Process-401 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-401 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-399 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-399 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.ERROR ERROR ERROR_Test! Process-402 pypet.ERROR ERROR ERROR_Test! Process-402 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-402 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-400 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-400 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.ERROR ERROR ERROR_Test! Process-403 pypet.ERROR ERROR ERROR_Test! Process-403 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-403 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-401 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-401 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-403 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_show_progress) ... MainProcess 2024-09-12 23:48:07,904 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% Process-404 2024-09-12 23:48:07,923 pypet.ERROR ERROR ERROR_Test! Process-404 2024-09-12 23:48:07,923 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-405 2024-09-12 23:48:07,928 pypet.ERROR ERROR ERROR_Test! Process-405 2024-09-12 23:48:07,928 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-404 2024-09-12 23:48:07,933 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-406 2024-09-12 23:48:07,934 pypet.ERROR ERROR ERROR_Test! Process-406 2024-09-12 23:48:07,935 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-407 2024-09-12 23:48:07,941 pypet.ERROR ERROR ERROR_Test! Process-407 2024-09-12 23:48:07,941 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:07,946 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-405 2024-09-12 23:48:07,954 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:07,969 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-408 2024-09-12 23:48:07,972 pypet.ERROR ERROR ERROR_Test! Process-408 2024-09-12 23:48:07,972 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-406 2024-09-12 23:48:07,976 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:07,991 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-409 2024-09-12 23:48:07,992 pypet.ERROR ERROR ERROR_Test! Process-409 2024-09-12 23:48:07,992 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-407 2024-09-12 23:48:07,999 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,014 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-410 2024-09-12 23:48:08,019 pypet.ERROR ERROR ERROR_Test! Process-410 2024-09-12 23:48:08,020 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-408 2024-09-12 23:48:08,022 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,037 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 Process-409 2024-09-12 23:48:08,045 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,059 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 Process-410 2024-09-12 23:48:08,068 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,082 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-09-12 23:48:08,485 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:48:08,575 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% Process-411 2024-09-12 23:48:08,593 prostdout CRITICAL Established redirection of `stdout`. Process-411 2024-09-12 23:48:08,595 pypet.ERROR ERROR ERROR_Test! Process-411 2024-09-12 23:48:08,595 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-412 2024-09-12 23:48:08,598 prostdout CRITICAL Established redirection of `stdout`. Process-412 2024-09-12 23:48:08,600 pypet.ERROR ERROR ERROR_Test! Process-412 2024-09-12 23:48:08,600 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-411 2024-09-12 23:48:08,604 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-413 2024-09-12 23:48:08,605 prostdout CRITICAL Established redirection of `stdout`. Process-413 2024-09-12 23:48:08,606 pypet.ERROR ERROR ERROR_Test! Process-413 2024-09-12 23:48:08,606 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-414 2024-09-12 23:48:08,611 prostdout CRITICAL Established redirection of `stdout`. Process-414 2024-09-12 23:48:08,612 pypet.ERROR ERROR ERROR_Test! Process-414 2024-09-12 23:48:08,613 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:08,617 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-412 2024-09-12 23:48:08,625 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,640 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 Process-415 2024-09-12 23:48:08,640 prostdout CRITICAL Established redirection of `stdout`. Process-415 2024-09-12 23:48:08,642 pypet.ERROR ERROR ERROR_Test! Process-415 2024-09-12 23:48:08,642 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-413 2024-09-12 23:48:08,649 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,665 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 Process-414 2024-09-12 23:48:08,672 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-416 2024-09-12 23:48:08,672 prostdout CRITICAL Established redirection of `stdout`. Process-416 2024-09-12 23:48:08,673 pypet.ERROR ERROR ERROR_Test! Process-416 2024-09-12 23:48:08,673 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:08,687 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-417 2024-09-12 23:48:08,693 prostdout CRITICAL Established redirection of `stdout`. Process-415 2024-09-12 23:48:08,695 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-417 2024-09-12 23:48:08,695 pypet.ERROR ERROR ERROR_Test! Process-417 2024-09-12 23:48:08,695 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:08,710 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 Process-416 2024-09-12 23:48:08,718 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,732 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 Process-417 2024-09-12 23:48:08,740 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:08,755 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_logging_stdout) ... MainProcess 2024-09-12 23:48:09,153 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:48:09,182 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-09-12 23:48:09,185 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:09,616 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocNoPoolLockLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:48:28,474 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__19223_2024_09_12_23h48m28s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_store_single_group) ... MainProcess 2024-09-12 23:48:37,208 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocNoPoolLockTest.test_two_runs) ... ok test_disable (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_creation_with_errors) ... Process-492 2024-09-12 23:48:54,330 pypet.ERROR ERROR ERROR_Test! Process-492 2024-09-12 23:48:54,330 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-493 2024-09-12 23:48:54,334 pypet.ERROR ERROR ERROR_Test! Process-493 2024-09-12 23:48:54,335 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-494 2024-09-12 23:48:54,340 pypet.ERROR ERROR ERROR_Test! Process-494 2024-09-12 23:48:54,340 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:54,361 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-495 2024-09-12 23:48:54,371 pypet.ERROR ERROR ERROR_Test! Process-495 2024-09-12 23:48:54,371 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-496 2024-09-12 23:48:54,379 pypet.ERROR ERROR ERROR_Test! Process-496 2024-09-12 23:48:54,379 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:54,380 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-497 2024-09-12 23:48:54,387 pypet.ERROR ERROR ERROR_Test! Process-497 2024-09-12 23:48:54,387 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:54,392 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-498 2024-09-12 23:48:54,402 pypet.ERROR ERROR ERROR_Test! Process-498 2024-09-12 23:48:54,402 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:54,402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:54,412 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:54,421 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:54,430 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:54,822 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logfile_old_way_disabling_mp_log) ... Process-510 pypet.ERROR ERROR ERROR_Test! Process-510 pypet.ERROR ERROR ERROR_Test! Process-510 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-510 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-511 pypet.ERROR ERROR ERROR_Test! Process-511 pypet.ERROR ERROR ERROR_Test! Process-511 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-511 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-512 pypet.ERROR ERROR ERROR_Test! Process-512 pypet.ERROR ERROR ERROR_Test! Process-512 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-512 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-513 pypet.ERROR ERROR ERROR_Test! Process-513 pypet.ERROR ERROR ERROR_Test! Process-513 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-513 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-514 pypet.ERROR ERROR ERROR_Test! Process-514 pypet.ERROR ERROR ERROR_Test! Process-514 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-514 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-515 pypet.ERROR ERROR ERROR_Test! Process-515 pypet.ERROR ERROR ERROR_Test! Process-515 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-515 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-516 pypet.ERROR ERROR ERROR_Test! Process-516 pypet.ERROR ERROR ERROR_Test! Process-516 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-516 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_show_progress) ... MainProcess 2024-09-12 23:48:56,180 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% Process-519 2024-09-12 23:48:56,198 pypet.ERROR ERROR ERROR_Test! Process-519 2024-09-12 23:48:56,198 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-520 2024-09-12 23:48:56,202 pypet.ERROR ERROR ERROR_Test! Process-520 2024-09-12 23:48:56,202 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,207 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 Process-521 2024-09-12 23:48:56,207 pypet.ERROR ERROR ERROR_Test! Process-521 2024-09-12 23:48:56,207 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,217 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:48:56,218 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,226 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-522 2024-09-12 23:48:56,238 pypet.ERROR ERROR ERROR_Test! Process-522 2024-09-12 23:48:56,238 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-523 2024-09-12 23:48:56,241 pypet.ERROR ERROR ERROR_Test! Process-523 2024-09-12 23:48:56,241 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:56,242 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:56,245 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-524 2024-09-12 23:48:56,248 pypet.ERROR ERROR ERROR_Test! Process-524 2024-09-12 23:48:56,248 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,249 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,253 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:56,255 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,263 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:56,271 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:56,279 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-525 2024-09-12 23:48:56,279 pypet.ERROR ERROR ERROR_Test! Process-525 2024-09-12 23:48:56,279 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,287 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-09-12 23:48:56,289 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-09-12 23:48:56,686 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:48:56,801 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% QueueProcess 2024-09-12 23:48:56,811 prostdout CRITICAL Established redirection of `stdout`. Process-528 2024-09-12 23:48:56,817 prostdout CRITICAL Established redirection of `stdout`. Process-528 2024-09-12 23:48:56,819 pypet.ERROR ERROR ERROR_Test! Process-528 2024-09-12 23:48:56,819 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-529 2024-09-12 23:48:56,821 prostdout CRITICAL Established redirection of `stdout`. Process-529 2024-09-12 23:48:56,822 pypet.ERROR ERROR ERROR_Test! Process-529 2024-09-12 23:48:56,823 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-530 2024-09-12 23:48:56,826 prostdout CRITICAL Established redirection of `stdout`. Process-530 2024-09-12 23:48:56,827 pypet.ERROR ERROR ERROR_Test! Process-530 2024-09-12 23:48:56,827 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,827 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 MainProcess 2024-09-12 23:48:56,836 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:48:56,837 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,847 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-531 2024-09-12 23:48:56,857 prostdout CRITICAL Established redirection of `stdout`. Process-531 2024-09-12 23:48:56,858 pypet.ERROR ERROR ERROR_Test! Process-531 2024-09-12 23:48:56,859 pypet.CRITICAL CRITICAL CRITICAL_Test! Process-532 2024-09-12 23:48:56,863 prostdout CRITICAL Established redirection of `stdout`. QueueProcess 2024-09-12 23:48:56,864 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-532 2024-09-12 23:48:56,865 pypet.ERROR ERROR ERROR_Test! Process-532 2024-09-12 23:48:56,865 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,865 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 Process-533 2024-09-12 23:48:56,868 prostdout CRITICAL Established redirection of `stdout`. Process-533 2024-09-12 23:48:56,869 pypet.ERROR ERROR ERROR_Test! Process-533 2024-09-12 23:48:56,869 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:48:56,872 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,876 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:56,880 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-09-12 23:48:56,885 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter Process-534 2024-09-12 23:48:56,889 prostdout CRITICAL Established redirection of `stdout`. Process-534 2024-09-12 23:48:56,891 pypet.ERROR ERROR ERROR_Test! Process-534 2024-09-12 23:48:56,891 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:48:56,896 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:56,897 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-09-12 23:48:56,905 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:48:56,914 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_stdout (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_logging_stdout) ... MainProcess 2024-09-12 23:48:57,313 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:48:57,348 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-09-12 23:48:57,351 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:48:57,791 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocNoPoolQueueLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_expand) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:49:03,839 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__50824` did NOT complete: `run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:49:12,849 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__67319` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:49:21,693 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__87961` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:49:31,118 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__52276` did NOT complete: `run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocNoPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_disable (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_disable) ... WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_creation_with_errors) ... ForkPoolWorker-725 2024-09-12 23:49:35,507 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-725 2024-09-12 23:49:35,508 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-09-12 23:49:35,509 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-09-12 23:49:35,509 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-725 2024-09-12 23:49:35,517 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-725 2024-09-12 23:49:35,538 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-725 2024-09-12 23:49:35,538 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-09-12 23:49:35,545 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-09-12 23:49:35,565 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-09-12 23:49:35,566 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-725 2024-09-12 23:49:35,568 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-725 2024-09-12 23:49:35,577 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-725 2024-09-12 23:49:35,577 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-09-12 23:49:35,579 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-726 2024-09-12 23:49:35,587 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-726 2024-09-12 23:49:35,587 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-725 2024-09-12 23:49:35,589 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-725 2024-09-12 23:49:35,597 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-725 2024-09-12 23:49:35,597 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-726 2024-09-12 23:49:35,599 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-725 2024-09-12 23:49:35,610 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:36,012 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logfile_old_way_disabling_mp_log) ... ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-729 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-730 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-729 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_show_progress) ... MainProcess 2024-09-12 23:49:37,345 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-731 2024-09-12 23:49:37,351 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 2024-09-12 23:49:37,351 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-09-12 23:49:37,354 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-09-12 23:49:37,354 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 2024-09-12 23:49:37,360 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-731 2024-09-12 23:49:37,510 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 2024-09-12 23:49:37,511 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:37,512 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:01 ForkPoolWorker-732 2024-09-12 23:49:37,518 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-732 2024-09-12 23:49:37,674 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-09-12 23:49:37,674 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:37,673 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 ForkPoolWorker-731 2024-09-12 23:49:37,676 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:37,684 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 ForkPoolWorker-731 2024-09-12 23:49:37,685 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 2024-09-12 23:49:37,685 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-09-12 23:49:37,687 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:37,694 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-732 2024-09-12 23:49:37,696 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-732 2024-09-12 23:49:37,696 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-731 2024-09-12 23:49:37,698 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:37,705 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-731 2024-09-12 23:49:37,707 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-731 2024-09-12 23:49:37,707 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-732 2024-09-12 23:49:37,708 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:37,716 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 ForkPoolWorker-731 2024-09-12 23:49:37,719 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:37,727 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-09-12 23:49:38,231 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-733 2024-09-12 23:49:38,340 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:49:38,339 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-733 2024-09-12 23:49:38,345 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-09-12 23:49:38,346 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-09-12 23:49:38,346 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-734 2024-09-12 23:49:38,348 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-09-12 23:49:38,348 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-09-12 23:49:38,355 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-733 2024-09-12 23:49:38,368 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-09-12 23:49:38,368 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:38,368 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-734 2024-09-12 23:49:38,375 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ForkPoolWorker-734 2024-09-12 23:49:38,389 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-09-12 23:49:38,389 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:38,388 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 ForkPoolWorker-733 2024-09-12 23:49:38,391 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:38,398 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 ForkPoolWorker-733 2024-09-12 23:49:38,400 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-09-12 23:49:38,400 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-09-12 23:49:38,402 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:38,410 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-734 2024-09-12 23:49:38,411 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-734 2024-09-12 23:49:38,411 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-733 2024-09-12 23:49:38,413 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:38,419 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-733 2024-09-12 23:49:38,421 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-733 2024-09-12 23:49:38,421 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-734 2024-09-12 23:49:38,423 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:38,431 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 ForkPoolWorker-733 2024-09-12 23:49:38,434 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:38,442 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% ok test_logging_stdout (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_logging_stdout) ... MainProcess 2024-09-12 23:49:38,828 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:49:38,857 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-09-12 23:49:38,860 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:39,289 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocPoolLockLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_disable (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_disable) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! WARNING_Test! ERROR_Test! CRITICAL_Test! STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter STORE_Test! in parameter ok test_file_renaming (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_file_renaming) ... ok test_logfile_creation_normal (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_creation_normal) ... ok test_logfile_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_creation_with_errors) ... ForkPoolWorker-745 2024-09-12 23:49:40,730 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-745 2024-09-12 23:49:40,730 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-09-12 23:49:40,735 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-09-12 23:49:40,735 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-745 2024-09-12 23:49:40,737 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-745 2024-09-12 23:49:40,737 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-745 2024-09-12 23:49:40,743 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-745 2024-09-12 23:49:40,743 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-09-12 23:49:40,745 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-09-12 23:49:40,745 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-745 2024-09-12 23:49:40,747 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-745 2024-09-12 23:49:40,747 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-746 2024-09-12 23:49:40,750 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-746 2024-09-12 23:49:40,750 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:49:40,754 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,771 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,783 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,794 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,805 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,814 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:40,823 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:41,235 pypet.test ERROR ttt ok test_logfile_old_way_creation_with_errors (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_old_way_creation_with_errors) ... MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logfile_old_way_disabling_mp_log (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logfile_old_way_disabling_mp_log) ... ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-754 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-753 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess pypet.test ERROR ttt MainProcess pypet.test ERROR ttt ok test_logging_show_progress (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_show_progress) ... MainProcess 2024-09-12 23:49:42,681 progress ERROR PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-757 2024-09-12 23:49:42,691 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-757 2024-09-12 23:49:42,692 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-758 2024-09-12 23:49:42,695 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-09-12 23:49:42,695 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-757 2024-09-12 23:49:42,698 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-757 2024-09-12 23:49:42,698 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:42,698 progress ERROR PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-757 2024-09-12 23:49:42,705 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-757 2024-09-12 23:49:42,705 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:42,707 progress ERROR PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:49:42,707 progress ERROR PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 ForkPoolWorker-758 2024-09-12 23:49:42,709 pypet.ERROR ERROR ERROR_Test! MainProcess 2024-09-12 23:49:42,709 progress ERROR PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-758 2024-09-12 23:49:42,709 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-757 2024-09-12 23:49:42,710 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-757 2024-09-12 23:49:42,711 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:42,712 progress ERROR PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-758 2024-09-12 23:49:42,714 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-758 2024-09-12 23:49:42,714 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:49:42,718 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:42,733 progress ERROR PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-09-12 23:49:42,737 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:42,745 progress ERROR PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-09-12 23:49:42,749 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:42,760 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:42,771 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:42,781 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:42,791 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_show_progress_print (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_show_progress_print) ... MainProcess 2024-09-12 23:49:43,211 prostdout CRITICAL Established redirection of `stdout`. QueueProcess 2024-09-12 23:49:43,337 prostdout CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:49:43,339 prostdout CRITICAL PROGRESS: Finished 0/7 runs [ ] 0.0% ForkPoolWorker-761 2024-09-12 23:49:43,344 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-762 2024-09-12 23:49:43,348 prostdout CRITICAL Established redirection of `stdout`. ForkPoolWorker-761 2024-09-12 23:49:43,350 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-761 2024-09-12 23:49:43,350 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-762 2024-09-12 23:49:43,353 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-09-12 23:49:43,353 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-761 2024-09-12 23:49:43,357 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-761 2024-09-12 23:49:43,357 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:43,357 prostdout CRITICAL PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:00:00 ForkPoolWorker-761 2024-09-12 23:49:43,363 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-761 2024-09-12 23:49:43,363 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:43,365 prostdout CRITICAL PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:00 MainProcess 2024-09-12 23:49:43,366 prostdout CRITICAL PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:00 MainProcess 2024-09-12 23:49:43,366 prostdout CRITICAL PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:00 ForkPoolWorker-762 2024-09-12 23:49:43,367 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-09-12 23:49:43,367 pypet.CRITICAL CRITICAL CRITICAL_Test! ForkPoolWorker-761 2024-09-12 23:49:43,368 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-761 2024-09-12 23:49:43,368 pypet.CRITICAL CRITICAL CRITICAL_Test! MainProcess 2024-09-12 23:49:43,370 prostdout CRITICAL PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:00 ForkPoolWorker-762 2024-09-12 23:49:43,372 pypet.ERROR ERROR ERROR_Test! ForkPoolWorker-762 2024-09-12 23:49:43,372 pypet.CRITICAL CRITICAL CRITICAL_Test! QueueProcess 2024-09-12 23:49:43,375 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:43,389 prostdout CRITICAL PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:00 QueueProcess 2024-09-12 23:49:43,393 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:43,402 prostdout CRITICAL PROGRESS: Finished 7/7 runs [====================]100.0% QueueProcess 2024-09-12 23:49:43,405 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:43,416 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:43,427 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:43,437 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter QueueProcess 2024-09-12 23:49:43,447 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter ok test_logging_stdout (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_logging_stdout) ... MainProcess 2024-09-12 23:49:43,859 STDOUT CRITICAL Established redirection of `stdout`. MainProcess 2024-09-12 23:49:43,888 pypet.only.ERROR ERROR Test of Error Logging during run! MainProcess 2024-09-12 23:49:43,891 pypet.tests.integration.logging_test.LogWhenStored ERROR STORE_Test! in parameter MainProcess 2024-09-12 23:49:44,322 STDOUT CRITICAL sTdOuTLoGGinG ok test_throw_error_when_specifying_config_and_old_method (integration.logging_multiproc_test.MultiprocPoolQueueLoggingTest.test_throw_error_when_specifying_config_and_old_method) ... ok test_NOT_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_NOT_purge_duplicate_comments) ... Disabled redirection of `stdout`. Disabled redirection of `stdout`. ok test_a_large_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_a_large_run) ... ok test_errors (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_errors) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_file_overwriting) ... ok test_just_one_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_just_one_run) ... ok test_niceness (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:50:02,240 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__87713_2024_09_12_23h50m02s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_run) ... ok test_run_complex (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_run_complex) ... ok test_store_form_tuple (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_store_form_tuple) ... ok test_store_single_group (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_store_single_group) ... MainProcess 2024-09-12 23:50:10,489 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_time_display_of_loading) ... ok test_two_runs (integration.environment_multiproc_test.MultiprocPoolQueueTest.test_two_runs) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:50:31,596 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__93889` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:50:40,362 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__66134` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortLockTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:50:48,993 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__64086` did NOT complete: `run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortPipeTest.test_if_results_are_sorted_correctly_using_map) ... ok test_expand (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_expand) ... ok test_expand_after_reload (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_expand_after_reload) ... ok test_f_iter_runs (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:50:57,986 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__22556` did NOT complete: `run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.environment_multiproc_test.MultiprocPoolSortQueueTest.test_if_results_are_sorted_correctly_using_map) ... ok test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_a_large_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed' test_errors (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_errors) ... skipped 'Only makes sense if scoop is installed' test_expand (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_file_overwriting (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed' test_just_one_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed' test_niceness (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_niceness) ... skipped 'Only makes sense if scoop is installed' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed' test_run (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_run) ... skipped 'Only makes sense if scoop is installed' test_run_complex (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed' test_store_form_tuple (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed' test_store_single_group (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed' test_time_display_of_loading (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed' test_two_runs (integration.environment_scoop_test.MultiprocSCOOPNetlockTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed' test_NOT_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_NOT_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed and running' test_a_large_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_a_large_run) ... skipped 'Only makes sense if scoop is installed and running' test_errors (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_errors) ... skipped 'Only makes sense if scoop is installed and running' test_expand (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_expand) ... skipped 'Only makes sense if scoop is installed and running' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed and running' test_file_overwriting (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_file_overwriting) ... skipped 'Only makes sense if scoop is installed and running' test_just_one_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_just_one_run) ... skipped 'Only makes sense if scoop is installed and running' test_niceness (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_niceness) ... skipped 'Only makes sense if scoop is installed and running' test_purge_duplicate_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_purge_duplicate_comments) ... skipped 'Only makes sense if scoop is installed and running' test_run (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_run) ... skipped 'Only makes sense if scoop is installed and running' test_run_complex (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_run_complex) ... skipped 'Only makes sense if scoop is installed and running' test_store_form_tuple (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_store_form_tuple) ... skipped 'Only makes sense if scoop is installed and running' test_store_single_group (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_store_single_group) ... skipped 'Only makes sense if scoop is installed and running' test_switch_ON_large_tables (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_ON_large_tables) ... skipped 'Only makes sense if scoop is installed and running' test_switch_off_all_tables (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_off_all_tables) ... skipped 'Only makes sense if scoop is installed and running' test_switch_on_all_comments (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_switch_on_all_comments) ... skipped 'Only makes sense if scoop is installed and running' test_time_display_of_loading (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_time_display_of_loading) ... skipped 'Only makes sense if scoop is installed and running' test_two_runs (integration.environment_scoop_test.MultiprocSCOOPNetqueueTest.test_two_runs) ... skipped 'Only makes sense if scoop is installed and running' test_expand (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_expand) ... skipped 'Only makes sense if scoop is installed' test_expand_after_reload (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_expand_after_reload) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_f_iter_runs) ... skipped 'Only makes sense if scoop is installed' test_f_iter_runs_auto_load (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_f_iter_runs_auto_load) ... skipped 'Only makes sense if scoop is installed' test_graceful_exit (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_graceful_exit) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_manual_runs (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly_manual_runs) ... skipped 'Only makes sense if scoop is installed' test_if_results_are_sorted_correctly_using_map (integration.environment_scoop_test.MultiprocSCOOPSortLocalTest.test_if_results_are_sorted_correctly_using_map) ... skipped 'Only makes sense if scoop is installed' test_giant_matrices (integration.shared_data_test.MultiprocStorageLockTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.MultiprocStorageLockTest.test_loading_run) ... ok test_run (integration.shared_data_test.MultiprocStorageLockTest.test_run) ... ok test_run_large (integration.shared_data_test.MultiprocStorageLockTest.test_run_large) ... ok test_giant_matrices (integration.shared_data_test.MultiprocStorageNetlockTest.test_giant_matrices) ... skipped 'Can only be run with zmq' test_loading_run (integration.shared_data_test.MultiprocStorageNetlockTest.test_loading_run) ... skipped 'Can only be run with zmq' test_run (integration.shared_data_test.MultiprocStorageNetlockTest.test_run) ... skipped 'Can only be run with zmq' test_run_large (integration.shared_data_test.MultiprocStorageNetlockTest.test_run_large) ... skipped 'Can only be run with zmq' test_giant_matrices (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_loading_run) ... ok test_run (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_run) ... ok test_run_large (integration.shared_data_test.MultiprocStorageNoPoolLockTest.test_run_large) ... ok test_v_property (unittests.utils_test.NamingSchemeTest.test_v_property) ... ok test_v_property_slots (unittests.utils_test.NamingSchemeTest.test_v_property_slots) ... ok test_cannot_expand_and_not_explore_throwing_type_error (pypet.tests.unittests.parameter_test.ParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (pypet.tests.unittests.parameter_test.ParameterTest.test_equal_values) ... ok test_expanding (pypet.tests.unittests.parameter_test.ParameterTest.test_expanding) ... ok test_expanding_type_error (pypet.tests.unittests.parameter_test.ParameterTest.test_expanding_type_error) ... ok test_exploration (pypet.tests.unittests.parameter_test.ParameterTest.test_exploration) ... ok test_get_data (pypet.tests.unittests.parameter_test.ParameterTest.test_get_data) ... ok test_get_item (pypet.tests.unittests.parameter_test.ParameterTest.test_get_item) ... ok test_meta_settings (pypet.tests.unittests.parameter_test.ParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (pypet.tests.unittests.parameter_test.ParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (pypet.tests.unittests.parameter_test.ParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (pypet.tests.unittests.parameter_test.ParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (pypet.tests.unittests.parameter_test.ParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (pypet.tests.unittests.parameter_test.ParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (pypet.tests.unittests.parameter_test.ParameterTest.test_rename) ... ok test_resizing_and_deletion (pypet.tests.unittests.parameter_test.ParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (pypet.tests.unittests.parameter_test.ParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (pypet.tests.unittests.parameter_test.ParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (pypet.tests.unittests.parameter_test.ParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (pypet.tests.unittests.parameter_test.ParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (pypet.tests.unittests.parameter_test.ParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (pypet.tests.unittests.parameter_test.ParameterTest.test_values_of_same_type) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.PickleParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.PickleParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.PickleParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.PickleParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.PickleParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.PickleParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.PickleParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.PickleParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.PickleParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.PickleParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.PickleParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.PickleParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.PickleParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.PickleParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.PickleParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.PickleParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.PickleParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.PickleParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.PickleParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.PickleParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.PickleParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.PickleParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.PickleParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.PickleParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.parameter_test.PickleResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.parameter_test.PickleResultTest.test_contains) ... ok test_deletion (unittests.parameter_test.PickleResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.parameter_test.PickleResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.parameter_test.PickleResultTest.test_dir) ... ok test_emptying (unittests.parameter_test.PickleResultTest.test_emptying) ... ok test_f_get_errors (unittests.parameter_test.PickleResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.parameter_test.PickleResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.parameter_test.PickleResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.parameter_test.PickleResultTest.test_get_data) ... ok test_get_item (unittests.parameter_test.PickleResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.parameter_test.PickleResultTest.test_getattr_and_setattr) ... ok test_iter (unittests.parameter_test.PickleResultTest.test_iter) ... ok test_meta_settings (unittests.parameter_test.PickleResultTest.test_meta_settings) ... ok test_natural_naming (unittests.parameter_test.PickleResultTest.test_natural_naming) ... ok test_pickling (unittests.parameter_test.PickleResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.parameter_test.PickleResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.parameter_test.PickleResultTest.test_rename) ... ok test_set_item_via_number (unittests.parameter_test.PickleResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.parameter_test.PickleResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.parameter_test.PickleResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.PickleResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.parameter_test.PickleResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.PickleResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.parameter_test.PickleResultTest.test_warning) ... ok test_progressbar (unittests.utils_test.ProgressBarTest.test_progressbar) ... 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You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:52:24,725 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__65072` did NOT complete: `run_00000005, run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (pypet.tests.integration.environment_test.ResultSortTest.test_if_results_are_sorted_correctly_using_map) ... ok test_Attribute_error_for_get_item (pypet.tests.unittests.parameter_test.ResultTest.test_Attribute_error_for_get_item) ... ok test_contains (pypet.tests.unittests.parameter_test.ResultTest.test_contains) ... ok test_deletion (pypet.tests.unittests.parameter_test.ResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (pypet.tests.unittests.parameter_test.ResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (pypet.tests.unittests.parameter_test.ResultTest.test_dir) ... ok test_emptying (pypet.tests.unittests.parameter_test.ResultTest.test_emptying) ... ok test_f_get_errors (pypet.tests.unittests.parameter_test.ResultTest.test_f_get_errors) ... ok test_f_get_many_items (pypet.tests.unittests.parameter_test.ResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (pypet.tests.unittests.parameter_test.ResultTest.test_f_to_dict_no_copy) ... ok test_get_data (pypet.tests.unittests.parameter_test.ResultTest.test_get_data) ... ok test_get_item (pypet.tests.unittests.parameter_test.ResultTest.test_get_item) ... ok test_getattr_and_setattr (pypet.tests.unittests.parameter_test.ResultTest.test_getattr_and_setattr) ... ok test_iter (pypet.tests.unittests.parameter_test.ResultTest.test_iter) ... ok test_meta_settings (pypet.tests.unittests.parameter_test.ResultTest.test_meta_settings) ... ok test_natural_naming (pypet.tests.unittests.parameter_test.ResultTest.test_natural_naming) ... ok test_pickling (pypet.tests.unittests.parameter_test.ResultTest.test_pickling) ... ok test_reject_outer_data_structure (pypet.tests.unittests.parameter_test.ResultTest.test_reject_outer_data_structure) ... ok test_rename (pypet.tests.unittests.parameter_test.ResultTest.test_rename) ... ok test_set_item_via_number (pypet.tests.unittests.parameter_test.ResultTest.test_set_item_via_number) ... ok test_set_numbering (pypet.tests.unittests.parameter_test.ResultTest.test_set_numbering) ... ok test_storage_and_loading (pypet.tests.unittests.parameter_test.ResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (pypet.tests.unittests.parameter_test.ResultTest.test_store_load_with_hdf5) ... ok test_string_representation (pypet.tests.unittests.parameter_test.ResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (pypet.tests.unittests.parameter_test.ResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (pypet.tests.unittests.parameter_test.ResultTest.test_warning) ... ok test_fail_after_n_tries (unittests.utils_test.RetryTest.test_fail_after_n_tries) ... I could not execute `RaisesNTypeErrors` with args () and kwargs {}, starting next try. Traceback (most recent call last): File "/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/utils/decorators.py", line 235, in new_func result = func(*args, **kwargs) File "/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/tests/unittests/utils_test.py", line 42, in __call__ raise TypeError('Nope!') TypeError: Nope! ok test_succeeds_after_retries (unittests.utils_test.RetryTest.test_succeeds_after_retries) ... ok test_array_getenum (unittests.shared_data_test.SharedArrayTest.test_array_getenum) ... Failed storing `results.shared_data` Failed storing `results.shared_data` ok test_array_getitem (unittests.shared_data_test.SharedArrayTest.test_array_getitem) ... ok test_array_iter (unittests.shared_data_test.SharedArrayTest.test_array_iter) ... ok test_array_iterrows (unittests.shared_data_test.SharedArrayTest.test_array_iterrows) ... ok test_array_len (unittests.shared_data_test.SharedArrayTest.test_array_len) ... ok test_array_read (unittests.shared_data_test.SharedArrayTest.test_array_read) ... ok test_array_setitem (unittests.shared_data_test.SharedArrayTest.test_array_setitem) ... ok test_table_append (unittests.shared_data_test.SharedTableTest.test_table_append) ... ok test_table_col (unittests.shared_data_test.SharedTableTest.test_table_col) ... ok test_table_flush (unittests.shared_data_test.SharedTableTest.test_table_flush) ... ok test_table_getitem (unittests.shared_data_test.SharedTableTest.test_table_getitem) ... ok test_table_iterrows (unittests.shared_data_test.SharedTableTest.test_table_iterrows) ... ok test_table_read (unittests.shared_data_test.SharedTableTest.test_table_read) ... ok test_table_setitem (unittests.shared_data_test.SharedTableTest.test_table_setitem) ... ok test_table_where (unittests.shared_data_test.SharedTableTest.test_table_where) ... ok test_make_default_file_when_giving_directory_without_slash (integration.environment_test.SimpleEnvironmentTest.test_make_default_file_when_giving_directory_without_slash) ... MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `/tmp/tmp_pypet_tests/trajectory.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. ok test_queue (unittests.trajectory_test.SingleRunQueueTest.test_queue) ... ok test_adding_derived_parameter_and_result (unittests.trajectory_test.SingleRunTest.test_adding_derived_parameter_and_result) ... ok test_auto_prepend (unittests.trajectory_test.SingleRunTest.test_auto_prepend) ... ok test_different_dir (unittests.trajectory_test.SingleRunTest.test_different_dir) ... ok test_if_single_run_can_be_pickled (unittests.trajectory_test.SingleRunTest.test_if_single_run_can_be_pickled) ... ok test_standard_change_param_change (unittests.trajectory_test.SingleRunTest.test_standard_change_param_change) ... ok test_all_slots (unittests.utils_test.SlotsTest.test_all_slots) ... ok test_pickling (unittests.utils_test.SlotsTest.test_pickling) ... ok test_cannot_expand_and_not_explore_throwing_type_error (unittests.parameter_test.SparseParameterTest.test_cannot_expand_and_not_explore_throwing_type_error) ... ok test_equal_values (unittests.parameter_test.SparseParameterTest.test_equal_values) ... ok test_expanding (unittests.parameter_test.SparseParameterTest.test_expanding) ... ok test_expanding_type_error (unittests.parameter_test.SparseParameterTest.test_expanding_type_error) ... ok test_exploration (unittests.parameter_test.SparseParameterTest.test_exploration) ... ok test_get_data (unittests.parameter_test.SparseParameterTest.test_get_data) ... ok test_get_item (unittests.parameter_test.SparseParameterTest.test_get_item) ... ok test_meta_settings (unittests.parameter_test.SparseParameterTest.test_meta_settings) ... ok test_param_accepts_not_unsupported_data (unittests.parameter_test.SparseParameterTest.test_param_accepts_not_unsupported_data) ... ok test_parameter_access_throws_ValueError (unittests.parameter_test.SparseParameterTest.test_parameter_access_throws_ValueError) ... ok test_parameter_locking (unittests.parameter_test.SparseParameterTest.test_parameter_locking) ... ok test_pickling_with_mocking_multiprocessing (unittests.parameter_test.SparseParameterTest.test_pickling_with_mocking_multiprocessing) ... ok test_pickling_without_multiprocessing (unittests.parameter_test.SparseParameterTest.test_pickling_without_multiprocessing) ... ok test_rename (unittests.parameter_test.SparseParameterTest.test_rename) ... ok test_resizing_and_deletion (unittests.parameter_test.SparseParameterTest.test_resizing_and_deletion) ... ok test_storage_and_loading (unittests.parameter_test.SparseParameterTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.SparseParameterTest.test_store_load_with_hdf5) ... ok test_store_load_with_hdf5_no_data (unittests.parameter_test.SparseParameterTest.test_store_load_with_hdf5_no_data) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.SparseParameterTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_type_error_for_exploring_if_range_does_not_match (unittests.parameter_test.SparseParameterTest.test_type_error_for_exploring_if_range_does_not_match) ... ok test_type_error_for_get_item (unittests.parameter_test.SparseParameterTest.test_type_error_for_get_item) ... ok test_type_error_for_not_supported_data (unittests.parameter_test.SparseParameterTest.test_type_error_for_not_supported_data) ... ok test_type_error_for_shrink (unittests.parameter_test.SparseParameterTest.test_type_error_for_shrink) ... ok test_values_of_same_type (unittests.parameter_test.SparseParameterTest.test_values_of_same_type) ... ok test_Attribute_error_for_get_item (unittests.parameter_test.SparseResultTest.test_Attribute_error_for_get_item) ... ok test_contains (unittests.parameter_test.SparseResultTest.test_contains) ... ok test_deletion (unittests.parameter_test.SparseResultTest.test_deletion) ... ok test_deletion_throws_error_if_item_not_there (unittests.parameter_test.SparseResultTest.test_deletion_throws_error_if_item_not_there) ... ok test_dir (unittests.parameter_test.SparseResultTest.test_dir) ... ok test_emptying (unittests.parameter_test.SparseResultTest.test_emptying) ... ok test_f_get_errors (unittests.parameter_test.SparseResultTest.test_f_get_errors) ... ok test_f_get_many_items (unittests.parameter_test.SparseResultTest.test_f_get_many_items) ... ok test_f_to_dict_no_copy (unittests.parameter_test.SparseResultTest.test_f_to_dict_no_copy) ... ok test_get_data (unittests.parameter_test.SparseResultTest.test_get_data) ... ok test_get_item (unittests.parameter_test.SparseResultTest.test_get_item) ... ok test_getattr_and_setattr (unittests.parameter_test.SparseResultTest.test_getattr_and_setattr) ... ok test_illegal_naming (unittests.parameter_test.SparseResultTest.test_illegal_naming) ... ok test_iter (unittests.parameter_test.SparseResultTest.test_iter) ... ok test_meta_settings (unittests.parameter_test.SparseResultTest.test_meta_settings) ... ok test_natural_naming (unittests.parameter_test.SparseResultTest.test_natural_naming) ... ok test_pickling (unittests.parameter_test.SparseResultTest.test_pickling) ... ok test_reject_outer_data_structure (unittests.parameter_test.SparseResultTest.test_reject_outer_data_structure) ... ok test_rename (unittests.parameter_test.SparseResultTest.test_rename) ... ok test_set_item_via_number (unittests.parameter_test.SparseResultTest.test_set_item_via_number) ... ok test_set_numbering (unittests.parameter_test.SparseResultTest.test_set_numbering) ... ok test_storage_and_loading (unittests.parameter_test.SparseResultTest.test_storage_and_loading) ... ok test_store_load_with_hdf5 (unittests.parameter_test.SparseResultTest.test_store_load_with_hdf5) ... ok test_string_representation (unittests.parameter_test.SparseResultTest.test_string_representation) ... ok test_the_insertion_made_implicetly_in_setUp (unittests.parameter_test.SparseResultTest.test_the_insertion_made_implicetly_in_setUp) ... ok test_warning (unittests.parameter_test.SparseResultTest.test_warning) ... ok test_giant_matrices (integration.shared_data_test.StorageDataEnvironmentTest.test_giant_matrices) ... ok test_loading_run (integration.shared_data_test.StorageDataEnvironmentTest.test_loading_run) ... ok test_run (integration.shared_data_test.StorageDataEnvironmentTest.test_run) ... ok test_run_large (integration.shared_data_test.StorageDataEnvironmentTest.test_run_large) ... ok test_all_arrays (unittests.shared_data_test.StorageDataTrajectoryTests.test_all_arrays) ... ok test_compacting (unittests.shared_data_test.StorageDataTrajectoryTests.test_compacting) ... +=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=+ Recursive copy: True Applying filters: Filters(complevel=9, complib='zlib', shuffle=True, bitshuffle=False, fletcher32=False, least_significant_digit=None) Start copying /tmp/tmp_pypet_tests/hdf5compacting.hdf5:/ to /tmp/tmp_pypet_tests/hdf5compacting_tmp.hdf5:/ +=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=++=+ Groups copied: 23 , Leaves copied: 26 , Links copied: 0 , Hard links copied: 0 User attrs copied KBytes copied: 95.625 Time copying: 0.205 s (real) 0.203 s (cpu) 99% Copied nodes/sec: 239.6 Copied KB/s : 468 ok test_conversions (unittests.shared_data_test.StorageDataTrajectoryTests.test_conversions) ... ok test_df (unittests.shared_data_test.StorageDataTrajectoryTests.test_df) ... ok test_errors (unittests.shared_data_test.StorageDataTrajectoryTests.test_errors) ... ok test_storing_and_manipulating (unittests.shared_data_test.StorageDataTrajectoryTests.test_storing_and_manipulating) ... ok test_auto_load (unittests.storage_test.StorageTest.test_auto_load) ... Failed loading `Trajectory Testautoload_2024_09_12_23h53m06s (len:1): (config: ), (derived_parameters: ), (results: )` Error while auto-loading `kdsfdsf` under ``. ok test_delete_links (unittests.storage_test.StorageTest.test_delete_links) ... ok test_delete_whole_subtrees (unittests.storage_test.StorageTest.test_delete_whole_subtrees) ... Failed storing `ResultGroup results.mytest.yourtest: (test: )` Failed storing `[('DELETE', )>, (), {})]` Could not remove `[('DELETE', )>, (), {})]` from the trajectory. Maybe the item(s) was/were never stored to disk. ok test_fail_on_wrong_kwarg (unittests.storage_test.StorageTest.test_fail_on_wrong_kwarg) ... ok test_file_size_many_params (unittests.storage_test.StorageTest.test_file_size_many_params) ... ok test_get_default (unittests.storage_test.StorageTest.test_get_default) ... Failed loading `Trajectory Testgetdefault_2024_09_12_23h53m17s (len:1): (config: ), (results: )` Error while auto-loading `results.I.am.run_ALL.a.mean.answ` under ``. Failed loading `Trajectory Testgetdefault_2024_09_12_23h53m17s (len:1): (config: ), (results: )` Error while auto-loading `kdsfdsf` under ``. ok test_hdf5_settings_and_context (unittests.storage_test.StorageTest.test_hdf5_settings_and_context) ... ok test_loading_and_storing_empty_containers (unittests.storage_test.StorageTest.test_loading_and_storing_empty_containers) ... ok test_loading_as_new (unittests.storage_test.StorageTest.test_loading_as_new) ... ok test_loading_explored_parameters (unittests.storage_test.StorageTest.test_loading_explored_parameters) ... ok test_max_depth_loading_and_storing (unittests.storage_test.StorageTest.test_max_depth_loading_and_storing) ... ok test_maximum_overview_size (unittests.storage_test.StorageTest.test_maximum_overview_size) ... ok test_migrations (unittests.storage_test.StorageTest.test_migrations) ... ok test_new_assignment_method (unittests.storage_test.StorageTest.test_new_assignment_method) ... Failed adding `jj` under `parameters`. Failed adding `jj` under `results`. Failed adding `jj` under `config`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `parameters`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `config`. Failed adding `jj` under ``. Failed adding `jj` under `parameters`. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `results`. Failed adding `jj` under ``. Failed adding `jj` under `parameters`. Failed adding `jj` under `config`. Failed adding `jj` under `results`. Failed adding `jj` under ``. Failed adding `jj` under `derived_parameters`. Failed adding `jj` under `results`. Failed adding `jj` under `config`. Failed adding `jj` under ``. ok test_no_run_information_loading (unittests.storage_test.StorageTest.test_no_run_information_loading) ... ok test_overwrite_annotations_and_results (unittests.storage_test.StorageTest.test_overwrite_annotations_and_results) ... ok test_overwrite_stuff (unittests.storage_test.StorageTest.test_overwrite_stuff) ... Cannot overwrite `{'b'}`, these items are not supposed to be stored by the leaf node. ok test_partial_loading (unittests.storage_test.StorageTest.test_partial_loading) ... You marked {'x'} for load only, but I cannot find these for `results.mytest.test` You marked `{'d'}` for not loading, but these were not part of `results.mytest.test` anyway. Failed loading `Result results.mytest.test: a='b'` Failed loading `[('LEAF', , (), {'load_except': ['x'], 'load_only': ['y']})]` ok test_partially_delete_stuff (unittests.storage_test.StorageTest.test_partially_delete_stuff) ... ok test_removal_of_error_parameter (unittests.storage_test.StorageTest.test_removal_of_error_parameter) ... Failed storing leaf `results.j.j.josie`. I will remove the hdf5 data I added again. Failed storing `Trajectory traj_2024_09_12_23h53m33s (len:1): (config: ), (results: )` Failed storing leaf `results.j.j.josie2`. I will remove the hdf5 data I added again. Failed storing `Trajectory traj_2024_09_12_23h53m33s (len:1): (config: ), (results: )` ok test_shortenings_of_names (unittests.storage_test.StorageTest.test_shortenings_of_names) ... ok test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors) ... Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed storing `test_storage_service_errors (unittests.storage_test.StorageTest.test_storage_service_errors)` Failed loading `Trajectory my_trajectory_2024_09_12_23h53m33s (len:1): (config: )` Failed storing `[('LEAF', None, None, None, None)]` Failed loading `Trajectory my_trajectory_2024_09_12_23h53m33s (len:1): (config: )` Failed loading `Trajectory my_trajectory_2024_09_12_23h53m33s (len:1): (config: )` ok test_store_and_load_large_dictionary (unittests.storage_test.StorageTest.test_store_and_load_large_dictionary) ... ok test_store_items_and_groups (unittests.storage_test.StorageTest.test_store_items_and_groups) ... ok test_store_overly_long_comment (unittests.storage_test.StorageTest.test_store_overly_long_comment) ... ok test_storing_and_loading_groups (unittests.storage_test.StorageTest.test_storing_and_loading_groups) ... ok test_version_mismatch (unittests.storage_test.StorageTest.test_version_mismatch) ... Failed loading `Trajectory TestVERSION_2024_09_12_23h53m36s (len:1): (config: )` Current pypet version is 0.6.1 with python 3.13.0 but your trajectory was created with version 0.1a.1 under python 3.13.0. Yet, you enforced the load, so I will handle the trajectory despite the version mismatch. ok test_wildcard_search (unittests.storage_test.StorageTest.test_wildcard_search) ... ok test_if_all_is_complete (unittests.brian2tests.module_test.TestAllBrian2Import.test_if_all_is_complete) ... ok test_import_star (unittests.brian2tests.module_test.TestAllBrian2Import.test_import_star) ... ok test_if_all_is_complete (unittests.module_test.TestAllImport.test_if_all_is_complete) ... ok test_import_star (unittests.module_test.TestAllImport.test_import_star) ... ok test_consecutive_merges (integration.merge_test.TestConsecutiveMerges.test_consecutive_merges) ... MainProcess 2024-09-12 23:54:14,097 root ERROR R and Alpha of consecutive merge test (-0.7995446619313565, 6.121232770166721e-10) ok test_merge_all_in_folder (integration.merge_test.TestConsecutiveMerges.test_merge_all_in_folder) ... ok test_merge_many (integration.merge_test.TestConsecutiveMerges.test_merge_many) ... ok test_flatten_dictionary (unittests.utils_test.TestDictionaryMethods.test_flatten_dictionary) ... ok test_nest_dicitionary (unittests.utils_test.TestDictionaryMethods.test_nest_dicitionary) ... ok test_nested_equal (unittests.utils_test.TestEqualityOperations.test_nested_equal) ... ok test_find_unique (unittests.utils_test.TestFindUnique.test_find_unique) ... Your parameter entries could not be hashed, now I am sorting slowly in O(N**2). Your parameter entries could not be hashed, now I am sorting slowly in O(N**2). ok test_iter (unittests.utils_test.TestIteratorChain.test_iter) ... ok test_next (unittests.utils_test.TestIteratorChain.test_next) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcLocal.test_pipeline) ... Executing command `ptrepack -v --complib zlib --complevel 9 --shuffle 1 --fletcher32 0 /tmp/tmp_pypet_tests/hdf5compacting.hdf5 /tmp/tmp_pypet_tests/hdf5compacting_tmp.hdf5` #### Compacting successful #### Renaming files ### Compacting and Renaming finished #### ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcLocal.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcLocal.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcLocal.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcLock.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcLock.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcLock.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcLock.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcPipe.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcPipe.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcPipe.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcPipe.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPImmediatePostProcQueue.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPImmediatePostProcQueue.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPImmediatePostProcQueue.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPImmediatePostProcQueue.test_postprocessing_iter_args) ... ok test_pipeline (integration.pipeline_test.TestMPPostProc.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestMPPostProc.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestMPPostProc.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestMPPostProc.test_postprocessing_iter_args) ... ok test_expand (integration.merge_test.TestMergeResultsSort.test_expand) ... ok test_expand_after_reload (integration.merge_test.TestMergeResultsSort.test_expand_after_reload) ... ok test_f_iter_runs (integration.merge_test.TestMergeResultsSort.test_f_iter_runs) ... ok test_f_iter_runs_auto_load (integration.merge_test.TestMergeResultsSort.test_f_iter_runs_auto_load) ... ok test_graceful_exit (integration.merge_test.TestMergeResultsSort.test_graceful_exit) ... You killed the process(es) via `SIGINT` (`CTRL+C`). I am trying to exit gracefully. Using `SIGINT` (`CTRL+C`) again will cause an immediate exit. MainProcess 2024-09-12 23:55:21,840 pypet.environment.Environment ERROR Following runs of trajectory `T__test_graceful_exit__28278` did NOT complete: `run_00000005, run_00000006, run_00000007, run_00000008, run_00000009, run_00000010, run_00000011, run_00000012, run_00000013, run_00000014, run_00000015, run_00000016, run_00000017, run_00000018, run_00000019, run_00000020, run_00000021, run_00000022, run_00000023, run_00000024, run_00000025, run_00000026, run_00000027, run_00000028, run_00000029, run_00000030, run_00000031, run_00000032, run_00000033, run_00000034, run_00000035, run_00000036, run_00000037, run_00000038, run_00000039, run_00000040, run_00000041, run_00000042, run_00000043, run_00000044, run_00000045, run_00000046, run_00000047, run_00000048` ok test_if_results_are_sorted_correctly (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly) ... ok test_if_results_are_sorted_correctly_manual_runs (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly_manual_runs) ... ok test_if_results_are_sorted_correctly_using_map (integration.merge_test.TestMergeResultsSort.test_if_results_are_sorted_correctly_using_map) ... ok test_merge_normally (integration.merge_test.TestMergeResultsSort.test_merge_normally) ... ok test_merge_remove_duplicates (integration.merge_test.TestMergeResultsSort.test_merge_remove_duplicates) ... ok test_concurrent_pool (unittests.mpwrappers_test.TestNetLock.test_concurrent_pool) ... skipped 'Cannot be run without zmq' test_concurrent_pool_faulty (unittests.mpwrappers_test.TestNetLock.test_concurrent_pool_faulty) ... skipped 'Cannot be run without zmq' test_concurrent_scoop (unittests.mpwrappers_test.TestNetLock.test_concurrent_scoop) ... skipped 'Cannot be run without zmq' test_errors (unittests.mpwrappers_test.TestNetLock.test_errors) ... skipped 'Cannot be run without zmq' test_single_core (unittests.mpwrappers_test.TestNetLock.test_single_core) ... skipped 'Cannot be run without zmq' test_timout_pool (unittests.mpwrappers_test.TestNetLock.test_timout_pool) ... skipped 'Cannot be run without zmq' test_NOT_purge_duplicate_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_a_large_run) ... ok test_errors (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_errors) ... ok test_expand (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_expand) ... ok test_expand_after_reload (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_expand_after_reload) ... ok test_file_overwriting (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_file_overwriting) ... ok test_just_one_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_just_one_run) ... ok test_niceness (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_niceness) ... ok test_purge_duplicate_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:55:43,770 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__46489_2024_09_12_23h55m43s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_run) ... ok test_run_complex (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_run_complex) ... ok test_store_form_tuple (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_store_form_tuple) ... ok test_store_single_group (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_store_single_group) ... MainProcess 2024-09-12 23:55:50,350 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_off_all_tables) ... ok test_switch_on_all_comments (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_switch_on_all_comments) ... ok test_time_display_of_loading (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_time_display_of_loading) ... ok test_two_runs (pypet.tests.integration.environment_test.TestOtherHDF5Settings2.test_two_runs) ... ok test_NOT_purge_duplicate_comments (integration.environment_test.TestOtherHDF5Settings.test_NOT_purge_duplicate_comments) ... ok test_a_large_run (integration.environment_test.TestOtherHDF5Settings.test_a_large_run) ... ok test_errors (integration.environment_test.TestOtherHDF5Settings.test_errors) ... ok test_expand (integration.environment_test.TestOtherHDF5Settings.test_expand) ... ok test_expand_after_reload (integration.environment_test.TestOtherHDF5Settings.test_expand_after_reload) ... ok test_file_overwriting (integration.environment_test.TestOtherHDF5Settings.test_file_overwriting) ... ok test_just_one_run (integration.environment_test.TestOtherHDF5Settings.test_just_one_run) ... ok test_niceness (integration.environment_test.TestOtherHDF5Settings.test_niceness) ... ok test_purge_duplicate_comments (integration.environment_test.TestOtherHDF5Settings.test_purge_duplicate_comments) ... MainProcess 2024-09-12 23:56:17,756 pypet.storageservice.HDF5StorageService ERROR Failed storing `Trajectory T__test_purge_duplicate_comments__76581_2024_09_12_23h56m17s (len:4): (config: ), (parameters: ), (derived_parameters: ), (results: ), (testleaf0: ), (testleaf1: ), ...` ok test_run (integration.environment_test.TestOtherHDF5Settings.test_run) ... ok test_run_complex (integration.environment_test.TestOtherHDF5Settings.test_run_complex) ... ok test_store_form_tuple (integration.environment_test.TestOtherHDF5Settings.test_store_form_tuple) ... ok test_store_single_group (integration.environment_test.TestOtherHDF5Settings.test_store_single_group) ... MainProcess 2024-09-12 23:56:24,415 pypet.storageservice.HDF5StorageService ERROR Failed loading `ParameterGroup parameters: (Normal: ), (Numpy: ), (Sparse: ), (Numpy_2D: ), (Numpy_3D: ), (Tuples: ), ...` ok test_switch_ON_large_tables (integration.environment_test.TestOtherHDF5Settings.test_switch_ON_large_tables) ... ok test_switch_off_all_tables (integration.environment_test.TestOtherHDF5Settings.test_switch_off_all_tables) ... ok test_switch_on_all_comments (integration.environment_test.TestOtherHDF5Settings.test_switch_on_all_comments) ... ok test_time_display_of_loading (integration.environment_test.TestOtherHDF5Settings.test_time_display_of_loading) ... ok test_two_runs (integration.environment_test.TestOtherHDF5Settings.test_two_runs) ... ok test_pipeline (integration.pipeline_test.TestPostProc.test_pipeline) ... ok test_pipeline_with_iter_args (integration.pipeline_test.TestPostProc.test_pipeline_with_iter_args) ... ok test_postprocessing (integration.pipeline_test.TestPostProc.test_postprocessing) ... ok test_postprocessing_iter_args (integration.pipeline_test.TestPostProc.test_postprocessing_iter_args) ... ok test_run_one_test (unittests.module_test.TestRunningTests.test_run_one_test) ... test_import_star (unittests.module_test.TestAllImport.test_import_star) ... ok ---------------------------------------------------------------------- Ran 1 test in 0.002s OK ok test_copy_custom_parameter (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_custom_parameter) ... ok test_copy_explored (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_explored) ... ok test_copy_links (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_links) ... ok test_copy_tree_annotations (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_tree_annotations) ... ok test_copy_tree_simple (unittests.trajectory_test.TrajectoryCopyTreeTest.test_copy_tree_simple) ... ok test_not_copy_from_node (unittests.trajectory_test.TrajectoryCopyTreeTest.test_not_copy_from_node) ... ok test_not_copy_leaves (unittests.trajectory_test.TrajectoryCopyTreeTest.test_not_copy_leaves) ... ok test_overwrite (unittests.trajectory_test.TrajectoryCopyTreeTest.test_overwrite) ... ok test_overwrite_leaves (unittests.trajectory_test.TrajectoryCopyTreeTest.test_overwrite_leaves) ... ok test_shallow_copy (unittests.trajectory_test.TrajectoryCopyTreeTest.test_shallow_copy) ... ok test_shallow_copy_not_full_copy (unittests.trajectory_test.TrajectoryCopyTreeTest.test_shallow_copy_not_full_copy) ... ok test_complex_find_statement (unittests.trajectory_test.TrajectoryFindTest.test_complex_find_statement) ... ok test_find_nothing (unittests.trajectory_test.TrajectoryFindTest.test_find_nothing) ... ok test_simple_find_idx (unittests.trajectory_test.TrajectoryFindTest.test_simple_find_idx) ... ok test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added (unittests.trajectory_test.TrajectoryTest.test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added) ... Failed adding `param2` under ``. Failed adding `test` under ``. ok test_change_properties_with_environment (unittests.trajectory_test.TrajectoryTest.test_change_properties_with_environment) ... ok test_changing (unittests.trajectory_test.TrajectoryTest.test_changing) ... ok test_changing_of_result (unittests.trajectory_test.TrajectoryTest.test_changing_of_result) ... ok test_contains_item_identity (unittests.trajectory_test.TrajectoryTest.test_contains_item_identity) ... ok test_data_dir (unittests.trajectory_test.TrajectoryTest.test_data_dir) ... ok test_debug (unittests.trajectory_test.TrajectoryTest.test_debug) ... ok test_deletion (unittests.trajectory_test.TrajectoryTest.test_deletion) ... ok test_deletion_during_run (unittests.trajectory_test.TrajectoryTest.test_deletion_during_run) ... ok test_dir (unittests.trajectory_test.TrajectoryTest.test_dir) ... ok test_dynamic_class_loading (unittests.trajectory_test.TrajectoryTest.test_dynamic_class_loading) ... ok test_f_get (unittests.trajectory_test.TrajectoryTest.test_f_get) ... ok test_f_get_run_information (unittests.trajectory_test.TrajectoryTest.test_f_get_run_information) ... ok test_f_getting_of_children (unittests.trajectory_test.TrajectoryTest.test_f_getting_of_children) ... ok test_f_is_completed (unittests.trajectory_test.TrajectoryTest.test_f_is_completed) ... ok test_find_in_all_runs (unittests.trajectory_test.TrajectoryTest.test_find_in_all_runs) ... ok test_find_in_all_runs_with_groups (unittests.trajectory_test.TrajectoryTest.test_find_in_all_runs_with_groups) ... ok test_get_all (unittests.trajectory_test.TrajectoryTest.test_get_all) ... ok test_get_children (unittests.trajectory_test.TrajectoryTest.test_get_children) ... ok test_get_data_dictionaries_directly (unittests.trajectory_test.TrajectoryTest.test_get_data_dictionaries_directly) ... ok test_get_item (unittests.trajectory_test.TrajectoryTest.test_get_item) ... ok test_if_picklable (unittests.trajectory_test.TrajectoryTest.test_if_picklable) ... ok test_illegal_namings (unittests.trajectory_test.TrajectoryTest.test_illegal_namings) ... ok test_iter_bfs (unittests.trajectory_test.TrajectoryTest.test_iter_bfs) ... ok test_iter_bfs_as_run (unittests.trajectory_test.TrajectoryTest.test_iter_bfs_as_run) ... ok test_iter_leaves (unittests.trajectory_test.TrajectoryTest.test_iter_leaves) ... ok test_kids (unittests.trajectory_test.TrajectoryTest.test_kids) ... ok test_lazy_setitem (unittests.trajectory_test.TrajectoryTest.test_lazy_setitem) ... ok test_max_depth (unittests.trajectory_test.TrajectoryTest.test_max_depth) ... ok test_mutual_exclusive_kwargs (unittests.trajectory_test.TrajectoryTest.test_mutual_exclusive_kwargs) ... ok test_new_grouping (unittests.trajectory_test.TrajectoryTest.test_new_grouping) ... ok test_no_clobber (unittests.trajectory_test.TrajectoryTest.test_no_clobber) ... MainProcess 2024-09-12 23:56:45,712 pypet.naturalnaming.NaturalNamingInterface ERROR Failed adding `test2` under ``. MainProcess 2024-09-12 23:56:45,712 pypet.naturalnaming.NaturalNamingInterface ERROR Failed adding `test` under ``. ok test_no_prefixes (unittests.trajectory_test.TrajectoryTest.test_no_prefixes) ... ok test_not_adding_pars_during_single_run (unittests.trajectory_test.TrajectoryTest.test_not_adding_pars_during_single_run) ... ok test_not_increase_exploration (unittests.trajectory_test.TrajectoryTest.test_not_increase_exploration) ... ok test_not_unique_search (unittests.trajectory_test.TrajectoryTest.test_not_unique_search) ... ok test_prefixes_dir (unittests.trajectory_test.TrajectoryTest.test_prefixes_dir) ... ok test_re_raise_old_wildcard_error (unittests.trajectory_test.TrajectoryTest.test_re_raise_old_wildcard_error) ... ok test_remove (unittests.trajectory_test.TrajectoryTest.test_remove) ... ok test_remove_of_all_type (unittests.trajectory_test.TrajectoryTest.test_remove_of_all_type) ... ok test_remove_of_explored_stuff_if_not_saved (unittests.trajectory_test.TrajectoryTest.test_remove_of_explored_stuff_if_not_saved) ... ok test_remove_of_explored_stuff_if_saved (unittests.trajectory_test.TrajectoryTest.test_remove_of_explored_stuff_if_saved) ... ok test_root_getting (unittests.trajectory_test.TrajectoryTest.test_root_getting) ... ok test_short_cuts (unittests.trajectory_test.TrajectoryTest.test_short_cuts) ... ok test_short_names_and_nested_failure (unittests.trajectory_test.TrajectoryTest.test_short_names_and_nested_failure) ... ok test_short_names_to_dict_failure (unittests.trajectory_test.TrajectoryTest.test_short_names_to_dict_failure) ... ok test_shrink (unittests.trajectory_test.TrajectoryTest.test_shrink) ... ok test_standard_change_param_change (unittests.trajectory_test.TrajectoryTest.test_standard_change_param_change) ... ok test_to_nested_dict (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict) ... ok test_to_nested_dict_intermediate_node (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict_intermediate_node) ... ok test_to_nested_dict_intermediate_node2 (unittests.trajectory_test.TrajectoryTest.test_to_nested_dict_intermediate_node2) ... ok test_truncation_of_string_statements_of_group_nodes (unittests.trajectory_test.TrajectoryTest.test_truncation_of_string_statements_of_group_nodes) ... ok ---------------------------------------------------------------------- Ran 923 tests in 874.648s OK (skipped=122) + pushd pypet/tests ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/pypet/tests ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=48 + /usr/bin/python3 all_examples.py IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_01.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_01.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG The result of `run_00000001` is: 7 IMPORTED MATPLOTLIB WITH AGG The full name of the new Skywalker Parameter is parameters.starwars.characters.luke_skywalker Damn it, there are two characters groups in the trajectory: NotUniqueNodeError('Node `characters` has been found more than once within the same depth 3. Full name of first occurrence is `parameters.starwars.characters` and of second `parameters.spaceballs.characters`') The name of the actor playing Luke is Mark Hamill. The object found for luke_skywalker is `Parameter parameters.starwars.characters.luke_skywalker (`May the force be with you!`): 'Mark Hamill'`. Help me Obiwan! Nothing there! George Lucas earned 111566834666.53162$$$! MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_03.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_03.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Traj1_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Traj1_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Traj1_2024_09_12_23h56m50s` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Traj1_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Traj1_2024_09_12_23h56m50s` were completed successfully. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Traj2_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Traj2_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Traj2_2024_09_12_23h56m50s` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Traj2_2024_09_12_23h56m50s`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Traj2_2024_09_12_23h56m50s` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj2_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing backup of Traj2_2024_09_12_23h56m50s. MainProcess pypet.storageservice.HDF5StorageService INFO Finished backup of Traj2_2024_09_12_23h56m50s. MainProcess pypet.storageservice.HDF5StorageService INFO Storing backup of Traj1_2024_09_12_23h56m50s. MainProcess pypet.storageservice.HDF5StorageService INFO Finished backup of Traj1_2024_09_12_23h56m50s. MainProcess pypet.trajectory.Trajectory INFO Merging the parameters MainProcess pypet.trajectory.Trajectory INFO Merging run information MainProcess pypet.trajectory.Trajectory INFO Merging derived parameters MainProcess pypet.trajectory.Trajectory INFO Start copying results and single run derived parameters MainProcess pypet.trajectory.Trajectory INFO Updating Trajectory information and changed parameters in storage MainProcess pypet.trajectory.Trajectory INFO Merging config! MainProcess pypet.trajectory.Trajectory INFO Merging environment config! MainProcess pypet.trajectory.Trajectory INFO Merging config successful! MainProcess pypet.trajectory.Trajectory INFO Adding merge information MainProcess pypet.trajectory.Trajectory INFO Writing merged data to disk MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.trajectory.Trajectory INFO Finished Merging! MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Traj1_2024_09_12_23h56m50s`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG run_00000000: x=1.000000, y=6.000000, z=6.000000 run_00000001: x=1.000000, y=7.000000, z=7.000000 run_00000002: x=1.000000, y=8.000000, z=8.000000 run_00000003: x=2.000000, y=6.000000, z=12.000000 run_00000004: x=2.000000, y=7.000000, z=14.000000 run_00000005: x=2.000000, y=8.000000, z=16.000000 run_00000006: x=3.000000, y=6.000000, z=18.000000 run_00000007: x=3.000000, y=7.000000, z=21.000000 run_00000008: x=3.000000, y=8.000000, z=24.000000 run_00000009: x=4.000000, y=6.000000, z=24.000000 run_00000010: x=4.000000, y=7.000000, z=28.000000 run_00000011: x=4.000000, y=8.000000, z=32.000000 run_00000012: x=3.000000, y=9.000000, z=27.000000 run_00000013: x=4.000000, y=9.000000, z=36.000000 run_00000014: x=5.000000, y=7.000000, z=35.000000 run_00000015: x=5.000000, y=8.000000, z=40.000000 run_00000016: x=5.000000, y=9.000000, z=45.000000 run_00000017: x=6.000000, y=7.000000, z=42.000000 run_00000018: x=6.000000, y=8.000000, z=48.000000 run_00000019: x=6.000000, y=9.000000, z=54.000000 MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_04.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting Pool with 4 processes MainProcess pypet.environment.Environment INFO Freezing pool input MainProcess pypet INFO PROGRESS: Finished 0/400 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 20/400 runs [= ] 5.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 40/400 runs [== ] 10.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 60/400 runs [=== ] 15.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 80/400 runs [==== ] 20.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 100/400 runs [===== ] 25.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 120/400 runs [====== ] 30.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 140/400 runs [======= ] 35.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 160/400 runs [======== ] 40.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 180/400 runs [========= ] 45.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 200/400 runs [========== ] 50.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 220/400 runs [=========== ] 55.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 240/400 runs [============ ] 60.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 260/400 runs [============= ] 65.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 280/400 runs [============== ] 70.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 300/400 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 320/400 runs [================ ] 80.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 340/400 runs [================= ] 85.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 360/400 runs [================== ] 90.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 380/400 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 400/400 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Pool has joined, will delete it. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_04_MP` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_04_MP`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_04_MP`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_04_MP`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_04_MP` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_08.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example08`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #3 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #4 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #4 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #5 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #5 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #6 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #6 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #7 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #7 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #8 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #8 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #9 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #9 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #10 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #11 of 12 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 12 ========================================= MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example08`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example08` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example08`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example08`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example08` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example08`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG The run names and results for parameter combinations with x==2 or y==8: run_00000002: x=1, y=8, z=8 run_00000003: x=2, y=6, z=12 run_00000004: x=2, y=7, z=14 run_00000005: x=2, y=8, z=16 run_00000008: x=3, y=8, z=24 run_00000011: x=4, y=8, z=32 IMPORTED MATPLOTLIB WITH AGG mat1 contains 0.334519 at position [10,10,10] mat2 contains 0.770338 at position [42,13] As promised: Nothing there! Told you! mat1 contains 0.334519 at position [10,10,10] And do not forget: Always look on the bright side of life! MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_10.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example10`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/144 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #1 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #2 of 144 ========================================= MainProcess pypet INFO 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========================================= Finished single run #9 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #10 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #10 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #11 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #11 of 144 ========================================= MainProcess pypet INFO ========================================= Starting single run #12 of 144 ========================================= MainProcess pypet INFO ========================================= Finished single run #12 of 144 ========================================= MainProcess pypet INFO 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MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example10`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example10` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example10`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example10`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example10` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example10`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_12.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/12 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 1/12 runs [= ] 8.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 2/12 runs [=== ] 16.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 3/12 runs [===== ] 25.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 4/12 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 5/12 runs [======== ] 41.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 6/12 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 7/12 runs [=========== ] 58.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 8/12 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 9/12 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 10/12 runs [================ ] 83.3%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 11/12 runs [================== ] 91.7%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 12/12 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. [ 6 7 8 12 14 16 18 21 24 24 28 32] MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_14.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/2 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 2 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 2 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/2 runs [========== ] 50.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 2 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 2 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/2 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch/node `mylink1`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. IMPORTED MATPLOTLIB WITH AGG x=1 Parameter parameters.x (len:2, `I am the first dimension!`): 1 IMPORTED MATPLOTLIB WITH AGG t=1 w=2 Linking to x gives: 1 INFO:pypet.storageservice.HDF5StorageService:I will use the hdf5 file `hdf5/example_16.hdf5`. INFO:pypet.storageservice.HDF5StorageService:Initialising storage or updating meta data of Trajectory `my_trajectory`. INFO:pypet.storageservice.HDF5StorageService:Finished init or meta data update for `my_trajectory`. IMPORTED MATPLOTLIB WITH AGG The last process to manipulate the trajectory was: `ForkPoolWorker-2` MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_18.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting Pool with 2 processes MainProcess pypet.environment.Environment INFO Freezing pool input MainProcess pypet INFO PROGRESS: Finished 0/2500 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 125/2500 runs [= ] 5.0%, remaining: 0:00:22 MainProcess pypet INFO PROGRESS: Finished 250/2500 runs [== ] 10.0%, remaining: 0:00:21 MainProcess pypet INFO PROGRESS: Finished 375/2500 runs [=== ] 15.0%, remaining: 0:00:20 MainProcess pypet INFO PROGRESS: Finished 500/2500 runs [==== ] 20.0%, remaining: 0:00:19 MainProcess pypet INFO PROGRESS: Finished 625/2500 runs [===== ] 25.0%, remaining: 0:00:18 MainProcess pypet INFO PROGRESS: Finished 750/2500 runs [====== ] 30.0%, remaining: 0:00:18 MainProcess pypet INFO PROGRESS: Finished 875/2500 runs [======= ] 35.0%, remaining: 0:00:16 MainProcess pypet INFO PROGRESS: Finished 1000/2500 runs [======== ] 40.0%, remaining: 0:00:15 MainProcess pypet INFO PROGRESS: Finished 1125/2500 runs [========= ] 45.0%, remaining: 0:00:14 MainProcess pypet INFO PROGRESS: Finished 1250/2500 runs [========== ] 50.0%, remaining: 0:00:13 MainProcess pypet INFO PROGRESS: Finished 1375/2500 runs [=========== ] 55.0%, remaining: 0:00:11 MainProcess pypet INFO PROGRESS: Finished 1500/2500 runs [============ ] 60.0%, remaining: 0:00:10 MainProcess pypet INFO PROGRESS: Finished 1625/2500 runs [============= ] 65.0%, remaining: 0:00:09 MainProcess pypet INFO PROGRESS: Finished 1750/2500 runs [============== ] 70.0%, remaining: 0:00:08 MainProcess pypet INFO PROGRESS: Finished 1875/2500 runs [=============== ] 75.0%, remaining: 0:00:06 MainProcess pypet INFO PROGRESS: Finished 2000/2500 runs [================ ] 80.0%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 2125/2500 runs [================= ] 85.0%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 2250/2500 runs [================== ] 90.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 2375/2500 runs [=================== ] 95.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 2500/2500 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Pool has joined, will delete it. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Multiplication` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Multiplication`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Multiplication`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Multiplication`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Multiplication` were completed successfully. The result of run 2042 is: 1680 The result of run 2044 is: 1760 IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Evaluated 0 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 Evaluated 0 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 Evaluated 0 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 Evaluated 0 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 Evaluated 0 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 Evaluated 0 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 Evaluated 0 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 Evaluated 0 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 Evaluated 0 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 Evaluated 0 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 Evaluated 0 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 Evaluated 0 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 Evaluated 0 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 Evaluated 0 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 Evaluated 0 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 Evaluated 0 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 Evaluated 0 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 Evaluated 0 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 Evaluated 0 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 Evaluated 0 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) IMPORTED MATPLOTLIB WITH AGG Start of evolution -- Generation 0 -- Evaluated 100 individuals Min 17.0 Max 34.0 Avg 25.3 Std 3.436568055487909 -- Generation 1 -- Evaluated 61 individuals Min 23.0 Max 35.0 Avg 28.16 Std 2.862586243242284 -- Generation 2 -- Evaluated 62 individuals Min 23.0 Max 35.0 Avg 30.52 Std 2.4473659309551787 -- Generation 3 -- Evaluated 66 individuals Min 27.0 Max 37.0 Avg 32.4 Std 1.9595917942265215 -- Generation 4 -- Evaluated 66 individuals Min 29.0 Max 39.0 Avg 33.87 Std 1.863625498859725 -- Generation 5 -- Evaluated 53 individuals Min 30.0 Max 41.0 Avg 35.63 Std 1.8420369160253016 -- Generation 6 -- Evaluated 58 individuals Min 31.0 Max 41.0 Avg 37.05 Std 1.768473918382755 -- Generation 7 -- Evaluated 73 individuals Min 34.0 Max 41.0 Avg 38.59 Std 1.449793088685299 -- Generation 8 -- Evaluated 61 individuals Min 36.0 Max 43.0 Avg 39.73 Std 1.2794920867282242 -- Generation 9 -- Evaluated 56 individuals Min 38.0 Max 43.0 Avg 40.71 Std 1.012867217358655 -- Generation 10 -- Evaluated 60 individuals Min 39.0 Max 44.0 Avg 41.54 Std 1.0432641084596423 -- Generation 11 -- Evaluated 59 individuals Min 39.0 Max 46.0 Avg 42.46 Std 1.307057764599554 -- Generation 12 -- Evaluated 65 individuals Min 41.0 Max 46.0 Avg 43.32 Std 1.0380751417889145 -- Generation 13 -- Evaluated 68 individuals Min 41.0 Max 47.0 Avg 44.15 Std 1.125833024919839 -- Generation 14 -- Evaluated 50 individuals Min 43.0 Max 47.0 Avg 44.99 Std 0.9643132271206599 -- Generation 15 -- Evaluated 68 individuals Min 43.0 Max 49.0 Avg 45.75 Std 1.1169153951844093 -- Generation 16 -- Evaluated 60 individuals Min 44.0 Max 48.0 Avg 46.4 Std 0.9380831519647441 -- Generation 17 -- Evaluated 53 individuals Min 45.0 Max 49.0 Avg 47.19 Std 0.9021640649017801 -- Generation 18 -- Evaluated 53 individuals Min 46.0 Max 49.0 Avg 47.77 Std 0.7190966555335749 -- Generation 19 -- Evaluated 60 individuals Min 46.0 Max 50.0 Avg 48.17 Std 0.7078841713161492 -- End of (successful) evolution -- Best individual is [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], (50.0,) MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_23.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/4 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.02s, trying other methods took 0.05s). [brian2.stateupdaters.base.method_choice] IMPORTED MATPLOTLIB WITH AGG Initial Run MainProcess root INFO creating /tmp/brian_flag_test_rmeewvyh/tmp MainProcess root INFO creating /tmp/brian_flag_test_rmeewvyh/tmp/brian_flag_test_rmeewvyh MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_rmeewvyh/flag_test.cpp -o /tmp/brian_flag_test_rmeewvyh/tmp/brian_flag_test_rmeewvyh/flag_test.o -w WARNING Removing unsupported flag '-w' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_083ybe7w/tmp MainProcess root INFO creating /tmp/brian_flag_test_083ybe7w/tmp/brian_flag_test_083ybe7w MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_083ybe7w/flag_test.cpp -o /tmp/brian_flag_test_083ybe7w/tmp/brian_flag_test_083ybe7w/flag_test.o -O3 WARNING Removing unsupported flag '-O3' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_b9t9iqlv/tmp MainProcess root INFO creating /tmp/brian_flag_test_b9t9iqlv/tmp/brian_flag_test_b9t9iqlv MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_b9t9iqlv/flag_test.cpp -o /tmp/brian_flag_test_b9t9iqlv/tmp/brian_flag_test_b9t9iqlv/flag_test.o -ffast-math WARNING Removing unsupported flag '-ffast-math' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_zlaptxum/tmp MainProcess root INFO creating /tmp/brian_flag_test_zlaptxum/tmp/brian_flag_test_zlaptxum MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_zlaptxum/flag_test.cpp -o /tmp/brian_flag_test_zlaptxum/tmp/brian_flag_test_zlaptxum/flag_test.o -fno-finite-math-only WARNING Removing unsupported flag '-fno-finite-math-only' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_pq9l1h3p/tmp MainProcess root INFO creating /tmp/brian_flag_test_pq9l1h3p/tmp/brian_flag_test_pq9l1h3p MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_pq9l1h3p/flag_test.cpp -o /tmp/brian_flag_test_pq9l1h3p/tmp/brian_flag_test_pq9l1h3p/flag_test.o -march=native WARNING Removing unsupported flag '-march=native' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO creating /tmp/brian_flag_test_vl9cch4n/tmp MainProcess root INFO creating /tmp/brian_flag_test_vl9cch4n/tmp/brian_flag_test_vl9cch4n MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -c /tmp/brian_flag_test_vl9cch4n/flag_test.cpp -o /tmp/brian_flag_test_vl9cch4n/tmp/brian_flag_test_vl9cch4n/flag_test.o -std=c++11 WARNING Removing unsupported flag '-std=c++11' from compiler flags. [brian2.codegen.cpp_prefs] MainProcess root INFO building '_cython_magic_53edffbc2da2770da599d0519fea2104' extension MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir/.cython MainProcess root INFO creating /builddir/.cython/brian_extensions/builddir/.cython/brian_extensions MainProcess root INFO gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/include -I/usr/lib64/python3.13/site-packages/brian2/synapses -I/usr/include/python3.13 -c /builddir/.cython/brian_extensions/_cython_magic_53edffbc2da2770da599d0519fea2104.cpp -o /builddir/.cython/brian_extensions/builddir/.cython/brian_extensions/_cython_magic_53edffbc2da2770da599d0519fea2104.o WARNING Cannot use Cython, a test compilation failed: command 'gcc' failed: No such file or directory (CompileError) Certain compiler configurations (e.g. clang in a conda environment on OS X) are known to be problematic. Note that you can switch the compiler by setting the 'CC' and 'CXX' environment variables. For example, you may want to try 'CC=gcc' and 'CXX=g++'. [brian2.codegen.runtime.cython_rt.cython_rt.failed_compile_test] INFO Cannot use compiled code, falling back to the numpy code generation target. Note that this will likely be slower than using compiled code. Set the code generation to numpy manually to avoid this message: prefs.codegen.target = "numpy" [brian2.devices.device.codegen_fallback] Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #0 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/4 runs [===== ] 25.0%, remaining: 0:00:04 MainProcess pypet INFO ========================================= Starting single run #1 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.01s, trying other methods took 0.02s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #1 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/4 runs [========== ] 50.0%, remaining: 0:00:02 MainProcess pypet INFO ========================================= Starting single run #2 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.01s, trying other methods took 0.02s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #2 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/4 runs [=============== ] 75.0%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #3 of 4 ========================================= INFO No numerical integration method specified for group 'neurongroup', using method 'euler' (took 0.01s, trying other methods took 0.02s). [brian2.stateupdaters.base.method_choice] Initial Run Starting simulation at t=0. s for a duration of 100. ms 100. ms (100%) simulated in < 1s Measurement run Starting simulation at t=100. ms for a duration of 0.5 s 0.5 s (100%) simulated in < 1s MainProcess pypet INFO ========================================= Finished single run #3 of 4 ========================================= MainProcess pypet INFO PROGRESS: Finished 4/4 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_23_BRIAN2` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_23_BRIAN2`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_23_BRIAN2`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_23_BRIAN2`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_23_BRIAN2` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/3 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/3 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/3 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/3 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_05_Euler_Integration` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/parameter.py:1305: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy store_dict["explored_data" + ArrayParameter.IDENTIFIER]["idx"][ MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_05_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_05_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_05_Euler_Integration` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService ERROR Failed loading `Trajectory Example_05_Euler_Integration (`Go for Euler!`, len:3): (config: ), (derived_parameters: )` MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_05.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_05_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG That did'nt work, I am sorry: Could not create the class named `FunctionParameter`. ---------- The source code of your function ---------- def diff_lorenz(value_array, sigma, beta, rho): """The Lorenz attractor differential equation :param value_array: 3d array containing the x,y, and z component values. :param sigma: Constant attractor parameter :param beta: FConstant attractor parameter :param rho: Constant attractor parameter :return: 3d array of the Lorenz system evaluated at `value_array` """ diff_array = np.zeros(3) diff_array[0] = sigma * (value_array[1]-value_array[0]) diff_array[1] = value_array[0] * (rho - value_array[2]) - value_array[1] diff_array[2] = value_array[0] * value_array[1] - beta * value_array[2] return diff_array MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/example_06.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.naturalnaming.NaturalNamingInterface INFO You have marked parameter parameters.diff_name for change before, so here you go! MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet INFO PROGRESS: Finished 0/3 runs [ ] 0.0% MainProcess pypet INFO ========================================= Starting single run #0 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #0 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 1/3 runs [====== ] 33.3%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #1 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #1 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 2/3 runs [============= ] 66.7%, remaining: 0:00:00 MainProcess pypet INFO ========================================= Starting single run #2 of 3 ========================================= MainProcess pypet INFO ========================================= Finished single run #2 of 3 ========================================= MainProcess pypet INFO PROGRESS: Finished 3/3 runs [====================]100.0% MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Example_06_Euler_Integration` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/parameter.py:1305: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. A typical example is when you are setting values in a column of a DataFrame, like: df["col"][row_indexer] = value Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy store_dict["explored_data" + ArrayParameter.IDENTIFIER]["idx"][ MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `derived_parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Example_06_Euler_Integration`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Example_06_Euler_Integration`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Example_06_Euler_Integration` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Example_06_Euler_Integration`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `1`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG ---------- The source code of your function ---------- def diff_roessler(value_array, a, c): """The Roessler attractor differential equation :param value_array: 3d array containing the x,y, and z component values. :param a: Constant attractor parameter :param c: Constant attractor parameter :return: 3d array of the Roessler system evaluated at `value_array` """ b=a diff_array = np.zeros(3) diff_array[0] = -value_array[1] - value_array[2] diff_array[1] = value_array[0] + a * value_array[1] diff_array[2] = b + value_array[2] * (value_array[0] - c) return diff_array IMPORTED MATPLOTLIB WITH AGG Computing all patterns [==== ] 20.0% [======== ] 40.0%, remaining: 0:00:08 [============ ] 60.0%, remaining: 0:00:05 [================ ] 80.0%, remaining: 0:00:02 [====================]100.0%Plotting all patterns [== ] 10.0% [==== ] 20.0%, remaining: 0:00:01 [====== ] 30.0%, remaining: 0:00:01 [======== ] 40.0%, remaining: 0:00:00 [========== ] 50.0%, remaining: 0:00:00 [============ ] 60.0%, remaining: 0:00:00 [============== ] 70.0%, remaining: 0:00:00 [================ ] 80.0%, remaining: 0:00:00 [================== ] 90.0%, remaining: 0:00:00 [====================]100.0%MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `/builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_17_wrapping_an_existing_project/experiments/ca_patterns_pypet/all_patterns.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess root INFO Starting Simulation MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 4 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/10 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 1/10 runs [== ] 10.0%, remaining: 0:00:12 MainProcess pypet INFO PROGRESS: Finished 2/10 runs [==== ] 20.0%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 3/10 runs [====== ] 30.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 4/10 runs [======== ] 40.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 5/10 runs [========== ] 50.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 6/10 runs [============ ] 60.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 7/10 runs [============== ] 70.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 8/10 runs [================ ] 80.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 9/10 runs [================== ] 90.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 10/10 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `cellular_automata` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `cellular_automata`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `cellular_automata`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `cellular_automata` were completed successfully. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `cellular_automata`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `2`. MainProcess root INFO Printing data MainProcess root INFO [== ] 10.0% MainProcess root INFO [==== ] 20.0%, remaining: 0:00:01 MainProcess root INFO [====== ] 30.0%, remaining: 0:00:01 MainProcess root INFO [======== ] 40.0%, remaining: 0:00:00 MainProcess root INFO [========== ] 50.0%, remaining: 0:00:00 MainProcess root INFO [============ ] 60.0%, remaining: 0:00:00 MainProcess root INFO [============== ] 70.0%, remaining: 0:00:00 MainProcess root INFO [================ ] 80.0%, remaining: 0:00:00 MainProcess root INFO [================== ] 90.0%, remaining: 0:00:00 MainProcess root INFO [====================]100.0% MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/FiringRate.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess STDOUT INFO Adding Parameters MainProcess STDOUT INFO Adding exploration of I and tau_ref MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `FiringRate`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/303 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 16/303 runs [= ] 5.3%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 31/303 runs [== ] 10.2%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 46/303 runs [=== ] 15.2%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 61/303 runs [==== ] 20.1%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 76/303 runs [===== ] 25.1%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 91/303 runs [====== ] 30.0%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 107/303 runs [======= ] 35.3%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 122/303 runs [======== ] 40.3%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 137/303 runs [========= ] 45.2%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 152/303 runs [========== ] 50.2%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 167/303 runs [=========== ] 55.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 182/303 runs [============ ] 60.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 197/303 runs [============= ] 65.0%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 213/303 runs [============== ] 70.3%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 228/303 runs [=============== ] 75.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 243/303 runs [================ ] 80.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 258/303 runs [================= ] 85.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 273/303 runs [================== ] 90.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 288/303 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 303/303 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.Environment INFO Performing POSTPROCESSING MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `FiringRate`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `FiringRate` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `FiringRate`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/storageservice.py:4210: PerformanceWarning: your performance may suffer as PyTables will pickle object types that it cannot map directly to c-types [inferred_type->floating,key->block0_values] [items->Index([5.0, 7.5, 10.0], dtype='float64')] self._hdf5store.put(name, data, **kwargs) MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `FiringRate`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `FiringRate`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `FiringRate` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. IMPORTED MATPLOTLIB WITH AGG MainProcess STDOUT INFO Established redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/FiringRate.hdf5`. MainProcess pypet.storageservice.HDF5StorageService INFO You specified ``overwrite_file=True``, so I deleted the file `hdf5/FiringRate.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess STDOUT INFO Adding Parameters MainProcess STDOUT INFO Adding exploration of I and tau_ref MainProcess pypet.environment.Environment INFO ************************************************************ STARTING PPREPROCESSING for trajectory `FiringRatePipeline` ************************************************************ MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 2 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/303 runs [ ] 0.0% MainProcess pypet INFO PROGRESS: Finished 16/303 runs [= ] 5.3%, remaining: 0:00:07 MainProcess pypet INFO PROGRESS: Finished 31/303 runs [== ] 10.2%, remaining: 0:00:06 MainProcess pypet INFO PROGRESS: Finished 46/303 runs [=== ] 15.2%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 61/303 runs [==== ] 20.1%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 76/303 runs [===== ] 25.1%, remaining: 0:00:05 MainProcess pypet INFO PROGRESS: Finished 91/303 runs [====== ] 30.0%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 107/303 runs [======= ] 35.3%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 122/303 runs [======== ] 40.3%, remaining: 0:00:04 MainProcess pypet INFO PROGRESS: Finished 137/303 runs [========= ] 45.2%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 152/303 runs [========== ] 50.2%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 167/303 runs [=========== ] 55.1%, remaining: 0:00:03 MainProcess pypet INFO PROGRESS: Finished 182/303 runs [============ ] 60.1%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 197/303 runs [============= ] 65.0%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 213/303 runs [============== ] 70.3%, remaining: 0:00:02 MainProcess pypet INFO PROGRESS: Finished 228/303 runs [=============== ] 75.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 243/303 runs [================ ] 80.2%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 258/303 runs [================= ] 85.1%, remaining: 0:00:01 MainProcess pypet INFO PROGRESS: Finished 273/303 runs [================== ] 90.1%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 288/303 runs [=================== ] 95.0%, remaining: 0:00:00 MainProcess pypet INFO PROGRESS: Finished 303/303 runs [====================]100.0% MainProcess pypet.environment.Environment INFO Performing POSTPROCESSING MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `FiringRatePipeline` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `FiringRatePipeline`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `results`. /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/lib/python3.13/site-packages/pypet/storageservice.py:4210: PerformanceWarning: your performance may suffer as PyTables will pickle object types that it cannot map directly to c-types [inferred_type->floating,key->block0_values] [items->Index([5.0, 7.5, 10.0], dtype='float64')] self._hdf5store.put(name, data, **kwargs) MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `FiringRatePipeline`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `FiringRatePipeline`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `FiringRatePipeline` were completed successfully. IMPORTED MATPLOTLIB WITH AGG Disabled redirection of `stdout`. MainProcess pypet.storageservice.HDF5StorageService INFO I will use the hdf5 file `hdf5/Clustered_Network.hdf5`. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Components MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Analysers MainProcess pypet.brian2.network.NetworkManager INFO Adding Parameters of Runner MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building Components MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building Analysers MainProcess pypet.brian2.network.NetworkManager INFO Pre-Building NetworkRunner MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Clustered_Network`. MainProcess pypet.environment.Environment INFO I am preparing the Trajectory for the experiment and initialise the store. MainProcess pypet.environment.Environment INFO Initialising the storage for the trajectory. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ STARTING runs of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. IMPORTED MATPLOTLIB WITH AGG MainProcess pypet.environment.MultiprocContext INFO Starting the Storage Queue! MainProcess pypet.environment.Environment INFO Starting multiprocessing with at most 4 processes running at the same time. MainProcess pypet INFO PROGRESS: Finished 0/7 runs [ ] 0.0% Connecting ii Connecting ei Connecting ie Connectiong ee Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 1s Starting simulation at t=0.5 s for a duration of 1.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 3s 0.5 s (100%) simulated in 3s Starting simulation at t=0.5 s for a duration of 1.5 s Starting simulation at t=0.5 s for a duration of 1.5 s 0.5 s (100%) simulated in 4s 1.5 s (100%) simulated in 5s Starting simulation at t=0.5 s for a duration of 1.5 s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000000/I_syn_i.png R_ee: 1.000000, Mean FF: 0.506739 MainProcess pypet INFO PROGRESS: Finished 1/7 runs [== ] 14.3%, remaining: 0:01:00 Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 0.5 s (100%) simulated in 3s 1.2429 s (82%) simulated in 10s, estimated 2s remaining. 1.2544 s (83%) simulated in 10s, estimated 2s remaining. Starting simulation at t=0.5 s for a duration of 1.5 s 1.0534 s (70%) simulated in 10s, estimated 4s remaining. 1.5 s (100%) simulated in 11s 1.5 s (100%) simulated in 12s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000002/I_syn_i.png R_ee: 1.800000, Mean FF: 0.536855 MainProcess pypet INFO PROGRESS: Finished 2/7 runs [===== ] 28.6%, remaining: 0:00:54 Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000003/I_syn_i.png R_ee: 2.200000, Mean FF: 0.548508 MainProcess pypet INFO PROGRESS: Finished 3/7 runs [======== ] 42.9%, remaining: 0:00:29 1.5 s (100%) simulated in 14s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000001/I_syn_i.png R_ee: 1.400000, Mean FF: 0.535948 MainProcess pypet INFO PROGRESS: Finished 4/7 runs [=========== ] 57.1%, remaining: 0:00:18 Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s Connecting ii Connecting ei Connecting ie Connecting ee cluster #0 of 20 Connecting cluster with other neurons of higher index Connecting ee cluster #1 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #2 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #3 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #4 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #5 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #6 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #7 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #8 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #9 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #10 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #11 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #12 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #13 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #14 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #15 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #16 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #17 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #18 of 20 Connecting cluster with other neurons of lower index Connecting cluster with other neurons of higher index Connecting ee cluster #19 of 20 Connecting cluster with other neurons of lower index Starting simulation at t=0. s for a duration of 0.5 s 1.2458 s (83%) simulated in 10s, estimated 2s remaining. 0.5 s (100%) simulated in 3s 0.5 s (100%) simulated in 4s Starting simulation at t=0.5 s for a duration of 1.5 s 1.5 s (100%) simulated in 12s Starting simulation at t=0.5 s for a duration of 1.5 s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000004/I_syn_i.png R_ee: 2.600000, Mean FF: 0.764958 MainProcess pypet INFO PROGRESS: Finished 5/7 runs [============== ] 71.4%, remaining: 0:00:12 1.2362 s (82%) simulated in 10s, estimated 2s remaining. 1.036 s (69%) simulated in 10s, estimated 4s remaining. 1.5 s (100%) simulated in 12s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000006/I_syn_i.png R_ee: 3.400000, Mean FF: 0.213852 MainProcess pypet INFO PROGRESS: Finished 6/7 runs [================= ] 85.7%, remaining: 0:00:07 1.5 s (100%) simulated in 14s Plotting Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/spike.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/V.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/I_syn_e.png Current plot: /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/examples/example_24_large_scale_brian2_simulation/experiments/example_24/PLOTS/Clustered_Network/run_00000005/I_syn_i.png R_ee: 3.000000, Mean FF: 1.153781 MainProcess pypet INFO PROGRESS: Finished 7/7 runs [====================]100.0% MainProcess pypet.environment.MultiprocContext INFO The Storage Queue will no longer accept new data. Hang in there for a little while. There still might be some data in the queue that needs to be stored. MainProcess pypet.environment.MultiprocContext INFO The Storage Queue has joined. MainProcess pypet.storageservice.HDF5StorageService INFO Initialising storage or updating meta data of Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished init or meta data update for `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED all runs of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.environment.Environment INFO ************************************************************ STARTING FINAL STORING of trajectory `Clustered_Network` ************************************************************ MainProcess pypet.storageservice.HDF5StorageService INFO Start storing Trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `config`. MainProcess pypet.storageservice.HDF5StorageService INFO Storing branch `parameters`. MainProcess pypet.storageservice.HDF5StorageService INFO Finished storing Trajectory `Clustered_Network`. MainProcess pypet.environment.Environment INFO ************************************************************ FINISHED FINAL STORING of trajectory `Clustered_Network`. ************************************************************ MainProcess pypet.environment.Environment INFO All runs of trajectory `Clustered_Network` were completed successfully. MainProcess pypet.environment.Environment INFO Found storage service attached to Trajectory. Will use this storage service. MainProcess pypet.environment.Environment INFO Environment initialized. MainProcess pypet.storageservice.HDF5StorageService INFO Loading trajectory `Clustered_Network`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `config` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `derived_parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `parameters` in mode `2`. MainProcess pypet.storageservice.HDF5StorageService INFO Loading branch `results` in mode `1`. IMPORTED MATPLOTLIB WITH AGG *** Running under Linux *** ----- I will skip the following tests: `{'21'}` ---- ########## Running __init__.py ########### #### Example successful #### ########## Running example_01_first_steps.py ########### #### Example successful #### ########## Running example_02_trajectory_access_and_storage.py ########### #### Example successful #### ########## Running example_03_trajectory_merging.py ########### #### Example successful #### ########## Running example_04_multiprocessing.py ########### #### Example successful #### ########## Running example_08_f_find_idx.py ########### #### Example successful #### ########## Running example_09_large_results.py ########### #### Example successful #### ########## Running example_10_get_items_from_all_runs.py ########### #### Example successful #### ########## Running example_12_sharing_data_between_processes.py ########### #### Example successful #### ########## Running example_14_links.py ########### #### Example successful #### ########## Running example_15_more_ways_to_add_data.py ########### #### Example successful #### ########## Running example_16_multiproc_context.py ########### #### Example successful #### ########## Running example_18_many_runs.py ########### #### Example successful #### ########## Running example_19_using_deap.py ########### #### Example successful #### ########## Running example_19b_using_deap_less_overhead.py ########### #### Example successful #### ########## Running example_19c_using_deap_with_post_processing.py ########### #### Example successful #### ########## Running example_20_using_deap_manual_runs.py ########### #### Example successful #### ---------- Skipping example_21_scoop_multiprocessing.py ---------- ########## Running example_23_brian2_network.py ########### #### Example successful #### ########## Running example_05_custom_parameter.py ########### #### Example successful #### ########## Running example_06_parameter_presetting.py ########### #### Example successful #### Running original #### Example successful #### Running pypet wrapping #### Example successful #### ########## Running example_13_post_processing ########### Running main #### Example successful #### Running analysis #### Example successful #### Running pipeline #### Example successful #### ########## Running example_24_large_scale_brian2_simulation ########### Running script #### Example successful #### Running analysis #### Example successful #### + popd ~/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pypet-0.6.1-7.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.t66RXX + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + DOCDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/README.md /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python3-pypet + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pypet = 0.6.1-7.fc42 python3-pypet = 0.6.1-7.fc42 python3.13-pypet = 0.6.1-7.fc42 python3.13dist(pypet) = 0.6.1 python3dist(pypet) = 0.6.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.13 python3.13dist(numpy) python3.13dist(pandas) python3.13dist(scipy) python3.13dist(tables) Processing files: python-pypet-doc-0.6.1-7.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.v7mZAs + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + DOCDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/CHANGES.txt /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/_clean/examples /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/doc/build/latex/pypet.pdf /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/doc/python-pypet-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VeOQCX + umask 022 + cd /builddir/build/BUILD/python-pypet-0.6.1-build + cd pypet-0.6.1 + LICENSEDIR=/builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + cp -pr /builddir/build/BUILD/python-pypet-0.6.1-build/pypet-0.6.1/LICENSE /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT/usr/share/licenses/python-pypet-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pypet-doc = 0.6.1-7.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pypet-0.6.1-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-pypet-0.6.1-7.fc42.src.rpm Wrote: /builddir/build/RPMS/python-pypet-doc-0.6.1-7.fc42.noarch.rpm Wrote: /builddir/build/RPMS/python3-pypet-0.6.1-7.fc42.noarch.rpm Child return code was: 0