Mock Version: 5.6 Mock Version: 5.6 Mock Version: 5.6 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f42-build-54824783-6530193/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '46aaa1760efb4a03b17814ca7dbb3a51', '-D', '/var/lib/mock/f42-build-54824783-6530193/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/fastx_toolkit-0.0.14-36.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f42-build-54824783-6530193/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '38d04b1cb26541fba23e4e31c66bef21', '-D', '/var/lib/mock/f42-build-54824783-6530193/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.xcrrm4jf:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.RrLXpT + umask 022 + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + test -d /builddir/build/BUILD/fastx_toolkit-0.0.14-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/fastx_toolkit-0.0.14-build + /usr/bin/rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build + /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build + /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TrNklo + umask 022 + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + rm -rf fastx_toolkit-0.0.14 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/fastx_toolkit-0.0.14.tar.bz2 + STATUS=0 + '[' 0 -ne 0 ']' + cd fastx_toolkit-0.0.14 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (fastx_toolkit-gcc47.patch):' Patch #0 (fastx_toolkit-gcc47.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fastx_toolkit-gcc47.patch --fuzz=0 patching file src/libfastx/sequence_alignment.h + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.y8XSqZ + umask 022 + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd fastx_toolkit-0.0.14 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2014-01-05 21:15:52.000000000 +0000 +++ ./configure 2024-11-09 11:57:34.862125592 +0000 @@ -1933,7 +1933,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2024-11-09 11:57:34.862125592 +0000 +++ ./configure 2024-11-09 11:57:34.886127800 +0000 @@ -15681,7 +15681,7 @@ compiler='`$ECHO "X$compiler" | $Xsed -e "$delay_single_quote_subst"`' GCC='`$ECHO "X$GCC" | $Xsed -e "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "X$lt_cv_sys_global_symbol_pipe" | $Xsed -e "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "X$lt_cv_sys_global_symbol_to_cdecl" | $Xsed -e "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address" | $Xsed -e "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`' objdir='`$ECHO "X$objdir" | $Xsed -e "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh ++ grep -q runstatedir=DIR ./configure + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-ar... no checking for ar... ar checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether g++ supports C++11 features by default... yes checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands + make -j6 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' make all-recursive make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' Making all in m4 make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' Making all in src make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' Making all in libfastx make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o chomp.o chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx.o fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_args.o fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ranlib libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' Making all in fastx_clipper make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_clipper.o fastx_clipper.cpp /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' Making all in fastx_trimmer make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_trimmer.o fastx_trimmer.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' Making all in fastx_quality_stats make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_quality_stats.o fastx_quality_stats.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' Making all in fastq_quality_converter make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_converter.o fastq_quality_converter.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' Making all in fastq_to_fasta make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_to_fasta.o fastq_to_fasta.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' Making all in fastq_quality_filter make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_filter.o fastq_quality_filter.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_reverse_complement.o fastx_reverse_complement.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' Making all in fastx_collapser make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_collapser.o fastx_collapser.cpp /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' Making all in fastx_uncollapser make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' Making all in seqalign_test make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o seqalign_test.o seqalign_test.cpp /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o seqalign_test seqalign_test.o ../libfastx/libfastx.a libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o seqalign_test seqalign_test.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' Making all in fasta_formatter make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fasta_formatter.o fasta_formatter.cpp /bin/sh ../../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' Making all in fasta_nucleotide_changer make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' Making all in fastx_renamer make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_renamer.o fastx_renamer.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' Making all in fastq_masker make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_masker.o fastq_masker.c /bin/sh ../../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_masker fastq_masker.o ../libfastx/libfastx.a make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' Making all in doc make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' Making all in galaxy make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' Making all in tools make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' Making all in fastx_toolkit make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' Making all in test-data make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' Making all in static make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' Making all in fastx_icons make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' Making all in tool-data make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' Making all in scripts make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' Making all in build_scripts make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yYaez7 + umask 022 + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + '[' /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT ++ dirname /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT + mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build + mkdir /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd fastx_toolkit-0.0.14 + rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT + make install DESTDIR=/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT 'INSTALL=install -p' Making install in m4 make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/aclocal' install -p -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/aclocal' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4' Making install in src make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' Making install in libfastx make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx' Making install in fastx_clipper make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_clipper '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_clipper /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_clipper make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper' Making install in fastx_trimmer make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_trimmer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_trimmer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_trimmer make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer' Making install in fastx_quality_stats make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_quality_stats '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_quality_stats /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_quality_stats make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats' Making install in fastq_quality_converter make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastq_quality_converter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastq_quality_converter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_converter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter' Making install in fastq_to_fasta make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastq_to_fasta '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastq_to_fasta /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_to_fasta make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta' Making install in fastq_quality_filter make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastq_quality_filter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastq_quality_filter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_filter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastq_quality_trimmer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastq_quality_trimmer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_trimmer make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_artifacts_filter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_artifacts_filter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_artifacts_filter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_reverse_complement '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_reverse_complement /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_reverse_complement make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement' Making install in fastx_collapser make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_collapser '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_collapser /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_collapser make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser' Making install in fastx_uncollapser make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_uncollapser '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_uncollapser /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_uncollapser make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser' Making install in seqalign_test make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test' Making install in fasta_formatter make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fasta_formatter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fasta_formatter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fasta_formatter make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter' Making install in fasta_nucleotide_changer make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fasta_nucleotide_changer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fasta_nucleotide_changer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fasta_nucleotide_changer make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer' Making install in fastx_renamer make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastx_renamer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastx_renamer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_renamer make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer' Making install in fastq_masker make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' /bin/sh ../../libtool --mode=install install -p fastq_masker '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' libtool: install: install -p fastq_masker /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_masker make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc' Making install in galaxy make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' Making install in tools make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' Making install in fastx_toolkit make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools' Making install in test-data make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data' Making install in static make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' Making install in fastx_icons make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static' Making install in tool-data make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy' Making install in scripts make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' install -p fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts' Making install in build_scripts make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts' make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14' + mkdir /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit + cp -a galaxy/ /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit + rm /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_c_long_long.m4 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_cxx_compile_stdcxx_11.m4 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_cxx_header_stdcxx_tr1.m4 + find /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit/galaxy/ -name 'Makefile\.*' -delete + /usr/bin/find-debuginfo -j6 --strict-build-id -m -i --build-id-seed 0.0.14-36.fc42 --unique-debug-suffix -0.0.14-36.fc42.x86_64 --unique-debug-src-base fastx_toolkit-0.0.14-36.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14 find-debuginfo: starting Extracting debug info from 15 files DWARF-compressing 15 files sepdebugcrcfix: Updated 15 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/fastx_toolkit-0.0.14-36.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/bin/fastx_nucleotide_distribution_graph.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/fastx_nucleotide_distribution_line_graph.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/fastq_quality_boxplot_graph.sh from /usr/bin/env bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j6 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j6 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT Scanned 38 directories and 148 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/fastx_toolkit-0.0.14-build/SPECPARTS/rpm-debuginfo.specpart Processing files: fastx_toolkit-0.0.14-36.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.wijXgi + umask 022 + cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build + cd fastx_toolkit-0.0.14 + DOCDIR=/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/AUTHORS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/COPYING /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/NEWS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/README /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/THANKS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit + RPM_EC=0 ++ jobs -p + exit 0 Provides: fastx_toolkit = 0.0.14-36.fc42 fastx_toolkit(x86-64) = 0.0.14-36.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgtextutils-0.7.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(Carp) perl(Data::Dumper) perl(GD::Graph::bars) perl(Getopt::Long) perl(IO::Handle) perl(PerlIO::gzip) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: fastx_toolkit-galaxy-0.0.14-36.fc42.x86_64 Provides: fastx_toolkit-galaxy = 0.0.14-36.fc42 fastx_toolkit-galaxy(x86-64) = 0.0.14-36.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: fastx_toolkit-debugsource-0.0.14-36.fc42.x86_64 Provides: fastx_toolkit-debugsource = 0.0.14-36.fc42 fastx_toolkit-debugsource(x86-64) = 0.0.14-36.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: fastx_toolkit-debuginfo-0.0.14-36.fc42.x86_64 Provides: debuginfo(build-id) = 0cff06abf01774407a58b7dd80c3b1f95f84e529 debuginfo(build-id) = 1f9f1866c3f2f6bfd6410e568f38c3e855b1102a debuginfo(build-id) = 344f3c72235992d3ef5a03a5e1d929d42dfa3f32 debuginfo(build-id) = 36e2b54c42c07776df7e1b39f596884ca44b5ef7 debuginfo(build-id) = a3ea94bdfb04963c11b08c5369dc5782deea11bb debuginfo(build-id) = b954eacc7cc8570ed7746bab4afeeb554d0bac93 debuginfo(build-id) = bce631740cdbf3799f96f02da48df1acf75c8d74 debuginfo(build-id) = c99277b3d536f35d0d46139dd417570d8f69fb89 debuginfo(build-id) = cd40cf76bd42836e313aac089cd233aaea7780b0 debuginfo(build-id) = db58ce236a07637f192344b059fd1a6e3689a4b7 debuginfo(build-id) = dde6801a9e0d3c9bb127ae3fc7139204d96f93b5 debuginfo(build-id) = ea57496102f669cd1aa430073a73ba0188953815 debuginfo(build-id) = ece6c8b31a3adc77a6f8f94d7b9a669ff5ca76d3 debuginfo(build-id) = f8fa0cfd6307e0234f8f3eaade1cc12472d955d6 debuginfo(build-id) = f949733a7a1b4789b9ba14d3d3c1f3261d726b96 fastx_toolkit-debuginfo = 0.0.14-36.fc42 fastx_toolkit-debuginfo(x86-64) = 0.0.14-36.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fastx_toolkit-debugsource(x86-64) = 0.0.14-36.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT Wrote: /builddir/build/RPMS/fastx_toolkit-debugsource-0.0.14-36.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/fastx_toolkit-galaxy-0.0.14-36.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/fastx_toolkit-0.0.14-36.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/fastx_toolkit-debuginfo-0.0.14-36.fc42.x86_64.rpm Child return code was: 0