Mock Version: 6.1 Mock Version: 6.1 Mock Version: 6.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'], chrootPath='/var/lib/mock/epel8-build-side-110322-58928743-6569327/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9h3_2dc7:/etc/resolv.conf']) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/R-rJava-1.0.11-6.el8.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'], chrootPath='/var/lib/mock/epel8-build-side-110322-58928743-6569327/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9h3_2dc7:/etc/resolv.conf']) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.745cch + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rJava + /usr/bin/mkdir -p rJava + cd rJava + /usr/bin/gzip -dc /builddir/build/SOURCES/rJava_1.0-11.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm rJava/inst/jri/JRIEngine.jar rJava/inst/jri/REngine.jar + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.W8f8JH + umask 022 + cd /builddir/build/BUILD + cd rJava + find rJava/jri/REngine -name Makefile -exec sed -i s/1.6/1.8/g '{}' ';' + /usr/bin/make -O -j12 -C rJava/jri/REngine make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' javac -d . -source 1.8 -target 1.8 REXPLanguage.java REXP.java REXPVector.java REXPNull.java REngineUIInterface.java REXPExpressionVector.java REngineCallbacks.java REngine.java REXPUnknown.java RFactor.java REngineConsoleHistoryInterface.java REXPMismatchException.java REngineInputInterface.java package-info.java REngineOutputInterface.java REngineStdOutput.java REXPLogical.java REXPString.java REXPDouble.java REXPEnvironment.java REXPFactor.java REXPJavaReference.java RList.java REXPReference.java REXPWrapper.java REngineException.java REXPList.java MutableREXP.java REXPRaw.java REXPS4.java REXPInteger.java REngineEvalException.java REXPSymbol.java REXPGenericVector.java jar fc REngine.jar org rm -rf org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' javac -d . -cp REngine.jar Rserve/package-info.java Rserve/RFileInputStream.java Rserve/RFileOutputStream.java Rserve/StartRserve.java Rserve/RserveException.java Rserve/OOBInterface.java Rserve/RSession.java Rserve/RConnection.java Rserve/protocol/REXPFactory.java Rserve/protocol/jcrypt.java Rserve/protocol/RTalk.java Rserve/protocol/RPacket.java jar fc Rserve.jar org rm -rf org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' Note: Rserve/protocol/REXPFactory.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. + /usr/bin/make -O -j12 -C rJava/jri/REngine/JRI make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine/JRI' rm -rf org javac -source 1.8 -target 1.8 -classpath ../REngine.jar -d . ../../RConsoleOutputStream.java ../../RFactor.java ../../REXP.java ../../Rengine.java ../../RList.java ../../Mutex.java ../../package-info.java ../../RMainLoopCallbacks.java ../../RVector.java ../../RBool.java JRIEngine.java jar fc JRIEngine.jar org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine/JRI' Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. + mv rJava/jri/REngine/REngine.jar rJava/jri/REngine/JRI/JRIEngine.jar rJava/inst/jri/ + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.7tP4yY + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64 ++ dirname /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64 + cd rJava + mkdir -p /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library rJava * installing *source* package 'rJava' ... ** this is package 'rJava' version '1.0-11' files 'inst/jri/JRIEngine.jar', 'inst/jri/REngine.jar', 'jri/REngine/JRI/Makefile', 'jri/REngine/JRI/test/Makefile', 'jri/REngine/Makefile', 'jri/REngine/Rserve/Makefile', 'jri/REngine/Rserve/test/Makefile' have the wrong MD5 checksums ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux' java libs : '-L/usr/lib/jvm/jre/lib/aarch64/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... yes checking whether JNI programs run... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/builddir/build/BUILD/rJava/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' 'CC=gcc' 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' 'CPPFLAGS=-I/usr/local/include' --cache-file=/dev/null --srcdir=. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking for sys/select.h... yes checking Java version... 1.8.0_452 checking Java compatibility version (integer)... 8 checking whether /usr/bin/javah actually works... yes checking for target flags... -target 1.4 -source 1.4 checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs using C compiler: 'gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-26)' gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Rglue.c -o Rglue.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c arrayc.c -o arrayc.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c callJNI.c -o callJNI.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c callback.c -o callback.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c fields.c -o fields.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c jri_glue.c -o jri_glue.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c loader.c -o loader.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c otables.c -o otables.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rJava.c -o rJava.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c registration.c -o registration.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c rjstring.c -o rjstring.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c tools.c -o tools.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o rjstring.o tools.o -L/usr/lib/jvm/jre/lib/aarch64/server -ljvm -L/usr/lib64/R/lib -lR (cd ../jri && make) make[1]: Entering directory '/builddir/build/BUILD/rJava/rJava/jri' make -C src JRI.jar make[2]: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/src' /usr/bin/javac -target 1.4 -source 1.4 -d . ../RConsoleOutputStream.java ../RFactor.java ../REXP.java ../Rengine.java ../RList.java ../Mutex.java ../package-info.java ../RMainLoopCallbacks.java ../RVector.java ../RBool.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings if [ -n "/usr/bin/javah" ]; then /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine; fi gcc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/include/R -I/usr/include/R gcc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/include/R -I/usr/include/R gcc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/include/R -I/usr/include/R gcc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/include/R -I/usr/include/R gcc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux gcc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux gcc -c -o rjstring.o rjstring.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -fPIC -I/usr/lib/jvm/jre/../include -I/usr/lib/jvm/jre/../include/linux -I/usr/include/R -I/usr/include/R gcc -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o rjstring.o -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -L/usr/lib/jvm/jre/lib/aarch64/server -ljvm -Wl,--export-dynamic -fopenmp -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -L/usr/lib64/R/lib -lR -ltre -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n /usr/bin/javac -target 1.4 -source 1.4 -d . ../package-info.java ../RFactor.java ../REXP.java ../RList.java ../Mutex.java ../RVector.java ../RBool.java ../RConsoleOutputStream.java ../Rengine.java ../RMainLoopCallbacks.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 4 warnings /usr/bin/jar fc JRI.jar org libjri.so make[2]: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/src' rm -f libjri.so cp src/libjri.so libjri.so /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings /usr/bin/javac -target 1.4 -source 1.4 -classpath src/JRI.jar -d examples examples/rtest2.java warning: [options] bootstrap class path not set in conjunction with -source 1.4 warning: [options] source value 1.4 is obsolete and will be removed in a future release warning: [options] target value 1.4 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 4 warnings make[1]: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri' installing via 'install.libs.R' to /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library/00LOCK-rJava/00new/rJava ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rJava' finding HTML links ... done Exceptions html J html accessOp html aslist html clone html instanceof html jarray html jarrayRef-class html java-tools html javaImport html jcall html jcast html jcastToArray html jcheck html jclassName html jengine html jequals html jfield html jfloat-class html jfloat html jgc html jinit html jmemprof html jnew html jnull html jobjRef-class html jpackage html jrectRef-class html jreflection html jserialize html jsimplify html loader html new html rJava-internal html rep html show html toJava html with html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rJava) + test -d rJava/src + cd rJava/src + rm -f Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o rjstring.o tools.o rJava.so + rm -f /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j12 --strict-build-id -m -i --build-id-seed 1.0.11-6.el8 --unique-debug-suffix -1.0.11-6.el8.aarch64 --unique-debug-src-base R-rJava-1.0.11-6.el8.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rJava extracting debug info from /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library/rJava/libs/rJava.so extracting debug info from /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64/usr/lib64/R/library/rJava/jri/libjri.so /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 395 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile '' 1 + /usr/lib/rpm/brp-python-hardlink + PYTHON3=/usr/bin/python3.6 + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.tWShgp + umask 022 + cd /builddir/build/BUILD + cd rJava + export LANG=C.UTF-8 + LANG=C.UTF-8 + export _R_CHECK_FORCE_SUGGESTS_=0 + _R_CHECK_FORCE_SUGGESTS_=0 + /usr/bin/R CMD check --no-manual --ignore-vignettes --no-examples rJava * using log directory ‘/builddir/build/BUILD/rJava/rJava.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: aarch64-redhat-linux-gnu * R was compiled by gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-26) GNU Fortran (GCC) 8.5.0 20210514 (Red Hat 8.5.0-26) * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: UTF-8 * using options ‘--no-examples --no-manual --ignore-vignettes’ * checking for file ‘rJava/DESCRIPTION’ ... OK * this is package ‘rJava’ version ‘1.0-11’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.21/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.21/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.21/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.21/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.21/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.21/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... NOTE Found the following apparent object files/libraries: inst/jri/libjri.so jri/libjri.so jri/src/Rcallbacks.o jri/src/Rengine.o jri/src/Rinit.o jri/src/globals.o jri/src/jri.o jri/src/libjri.so jri/src/rjava.o jri/src/rjstring.o Object files/libraries should not be included in a source package. * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rJava’ can be installed ... OK * used C compiler: ‘gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-26)’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Found the following possibly unsafe calls: File ‘rJava/R/import.R’: unlockBinding(IMPORTER, env = env) assignInNamespace(IMPORTER, importer, envir = env) File ‘rJava/R/jinit.R’: unlockBinding(x, .env) unlockBinding(x, pe) * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... NOTE Package has both ‘src/Makevars.in’ and ‘src/Makevars’. Installation with --no-configure' is unlikely to work. If you intended ‘src/Makevars’ to be used on Windows, rename it to ‘src/Makevars.win’ otherwise remove it. If ‘configure’ created ‘src/Makevars’, you need a ‘cleanup’ script. * checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... NOTE Found the following Makefile(s) with an include directive with a pathname using R_HOME: jri/src/Makefile.win jri/src/win32/Makefile src/jvm-w32/Makefile Even though not recommended, variable R_HOME may contain spaces. Makefile directives use space as a separator and there is no portable way to quote/escape the space in Make rules and directives. However, one can and should quote pathnames when passed from Makefile to the shell, and this can be done specifically when invoking Make recursively. It is therefore recommended to use the Make '-f' option to include files in directories specified using R_HOME. This option can be specified multiple times to include multiple Makefiles. Note that 'Makeconf' is included automatically into top-level makefile of a package. More information can be found in 'Writing R Extensions'. * checking compiled code ... NOTE Note: information on .o files is not available File ‘/builddir/build/BUILD/rJava/rJava.Rcheck/rJava/libs/rJava.so’: Found ‘_exit’, possibly from ‘_exit’ (C) Found ‘stderr’, possibly from ‘stderr’ (C) Found ‘stdout’, possibly from ‘stdout’ (C) File ‘rJava/libs/rJava.so’: Found non-API calls to R: ‘EXTPTR_PROT’, ‘EXTPTR_PTR’, ‘R_CStackLimit’, ‘R_CStackStart’ Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. * checking examples ... SKIPPED * DONE Status: 5 NOTEs See ‘/builddir/build/BUILD/rJava/rJava.Rcheck/00check.log’ for details. + exit 0 Processing files: R-rJava-1.0.11-6.el8.aarch64 Provides: R(rJava) = 1.0-11 R-rJava = 1.0.11-6.el8 R-rJava(aarch-64) = 1.0.11-6.el8 libjri.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh R(methods) R-core >= 3.6.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdeflate.so.0()(64bit) libdl.so.2()(64bit) libgomp.so.1()(64bit) libicui18n.so.60()(64bit) libicuuc.so.60()(64bit) libjvm.so()(64bit) libjvm.so(SUNWprivate_1.1)(64bit) liblzma.so.5()(64bit) libm.so.6()(64bit) libpcre2-8.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) librt.so.1()(64bit) libtirpc.so.3()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) libzstd.so.1()(64bit) rtld(GNU_HASH) Obsoletes: R-rJava-javadoc < 1.0.11-6.el8 Processing files: R-rJava-debugsource-1.0.11-6.el8.aarch64 Provides: R-rJava-debugsource = 1.0.11-6.el8 R-rJava-debugsource(aarch-64) = 1.0.11-6.el8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rJava-debuginfo-1.0.11-6.el8.aarch64 Provides: R-rJava-debuginfo = 1.0.11-6.el8 R-rJava-debuginfo(aarch-64) = 1.0.11-6.el8 debuginfo(build-id) = 4d034c2ff24c7a925d2a1c2fb5a3b6a4e60ddb79 debuginfo(build-id) = ab22a9602fd3222d9a3e47eb085b0819808c9680 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-rJava-debugsource(aarch-64) = 1.0.11-6.el8 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-rJava-1.0.11-6.el8.aarch64 Wrote: /builddir/build/RPMS/R-rJava-1.0.11-6.el8.aarch64.rpm Wrote: /builddir/build/RPMS/R-rJava-debugsource-1.0.11-6.el8.aarch64.rpm Wrote: /builddir/build/RPMS/R-rJava-debuginfo-1.0.11-6.el8.aarch64.rpm Child return code was: 0