Mock Version: 6.1
Mock Version: 6.1
Mock Version: 6.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f41-build-59189693-6571574/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1f01675370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b6faaf498e86468199b12afd3ec8e382', '-D', '/var/lib/mock/f41-build-59189693-6571574/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1738627200
Wrote: /builddir/build/SRPMS/libsonata-0.1.23-35.fc41.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f41-build-59189693-6571574/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1f01675370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '2c37c24fe5bf4fbc9039a937b0b7201d', '-D', '/var/lib/mock/f41-build-59189693-6571574/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.ZvtRS4
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RyobQf
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ rm -rf libsonata-0.1.23
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd libsonata-0.1.23
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'libsonata-0.1.23 base'
+ /usr/bin/git checkout --track -b rpm-build
Switched to a new branch 'rpm-build'
branch 'rpm-build' set up to track 'master'.
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Remove-pybind-redeclarations.patch
+ /usr/bin/git apply --index --reject -
Checking patch python/bindings.cpp...
Applied patch python/bindings.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0001-Remove-pybind-redeclarations.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-include-fmt-ranges.h-for-using-fmt-join-360.patch
+ /usr/bin/git apply --index --reject -
Checking patch src/node_sets.cpp...
Applied patch src/node_sets.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0002-include-fmt-ranges.h-for-using-fmt-join-360.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Use-std-filesystem.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Checking patch extlib/filesystem.hpp...
Checking patch src/config.cpp...
Checking patch src/node_sets.cpp...
Checking patch src/utils.cpp...
Applied patch CMakeLists.txt cleanly.
Applied patch extlib/filesystem.hpp cleanly.
Applied patch src/config.cpp cleanly.
Applied patch src/node_sets.cpp cleanly.
Applied patch src/utils.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0003-Use-std-filesystem.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-Substitute-ghc-in-tests.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/test_config.cpp...
Applied patch tests/test_config.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0004-Substitute-ghc-in-tests.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/main.cpp...
Checking patch tests/test_config.cpp...
Checking patch tests/test_edges.cpp...
Checking patch tests/test_node_sets.cpp...
Checking patch tests/test_nodes.cpp...
Checking patch tests/test_report_reader.cpp...
Checking patch tests/test_selection.cpp...
Applied patch tests/main.cpp cleanly.
Applied patch tests/test_config.cpp cleanly.
Applied patch tests/test_edges.cpp cleanly.
Applied patch tests/test_node_sets.cpp cleanly.
Applied patch tests/test_nodes.cpp cleanly.
Applied patch tests/test_report_reader.cpp cleanly.
Applied patch tests/test_selection.cpp cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0005-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/CMakeLists.txt...
Applied patch tests/CMakeLists.txt cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 0006-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/1.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Hunk #1 succeeded at 161 (offset -8 lines).
Applied patch CMakeLists.txt cleanly.
+ GIT_COMMITTER_DATE=@1738627200
+ GIT_AUTHOR_DATE=@1738627200
+ /usr/bin/git commit -q -m 1.patch --author 'rpm-build <rpm-build>'
+ rm -rf libsonata.egg-info
+ rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann
+ echo '#include <ghc/filesystem.hpp>'
+ echo '#include <nonstd/optional.hpp>'
+ echo '#include <nonstd/variant.hpp>'
+ sed -r -i 's/(-DEXTLIB_FROM_SUBMODULES=)ON/\1OFF/' setup.py
+ tomcli set pyproject.toml lists replace build-system.requires oldest-supported-numpy numpy
+ pushd tests/data
~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
+ rm nodes1.h5 edges1.h5 spikes.h5 somas.h5 elements.h5
+ popd
~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.QBMulG
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement not satisfied: cmake
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 1.26.4)
Handling setuptools from build-system.requires
Requirement not satisfied: setuptools
Handling wheel from build-system.requires
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.23-35.fc41.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f41-build-59189693-6571574/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1f01675370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e7129dfed31a4f56935450164b928741', '-D', '/var/lib/mock/f41-build-59189693-6571574/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.nH6Y8M
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.30.8)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 1.26.4)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 69.2.0)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement not satisfied: setuptools_scm
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.23-35.fc41.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f41-build-59189693-6571574/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1f01675370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7251f50b4a5241599fe9a9c0de38afe4', '-D', '/var/lib/mock/f41-build-59189693-6571574/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.yT9FF7
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.30.8)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 1.26.4)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 69.2.0)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
   (installed: setuptools_scm 8.0.4)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
running dist_info
creating libsonata.egg-info
writing libsonata.egg-info/PKG-INFO
writing dependency_links to libsonata.egg-info/dependency_links.txt
writing requirements to libsonata.egg-info/requires.txt
writing top-level names to libsonata.egg-info/top_level.txt
writing manifest file 'libsonata.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'extlib/nlohmann/json.hpp'
warning: no files found matching '*' under directory 'extlib/fmt/include'
warning: no files found matching '*' under directory 'extlib/fmt/src'
warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake'
warning: no files found matching 'extlib/fmt/CMakeLists.txt'
warning: no files found matching 'extlib/fmt/*.rst'
warning: no files found matching '*' under directory 'extlib/HighFive/include'
warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
warning: no files found matching 'extlib/HighFive/LICENSE'
warning: no files found matching '*' under directory 'python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
warning: no files found matching 'python/pybind11/CMakeLists.txt'
warning: no files found matching 'python/pybind11/LICENSE'
adding license file 'COPYING'
adding license file 'COPYING.LESSER'
adding license file 'AUTHORS.txt'
writing manifest file 'libsonata.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/libsonata-0.1.dev8.dist-info'
Handling numpy >=1.17.3 from hook generated metadata: Requires-Dist (libsonata)
Requirement satisfied: numpy >=1.17.3
   (installed: numpy 1.26.4)
Handling sphinx-bluebrain-theme ; extra == 'docs' from hook generated metadata: Requires-Dist (libsonata)
Ignoring alien requirement: sphinx-bluebrain-theme ; extra == 'docs'
+ cat /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
+ rm -rfv libsonata-0.1.dev8.dist-info/
removed 'libsonata-0.1.dev8.dist-info/top_level.txt'
removed 'libsonata-0.1.dev8.dist-info/METADATA'
removed 'libsonata-0.1.dev8.dist-info/COPYING'
removed 'libsonata-0.1.dev8.dist-info/COPYING.LESSER'
removed 'libsonata-0.1.dev8.dist-info/AUTHORS.txt'
removed directory 'libsonata-0.1.dev8.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/libsonata-0.1.23-35.fc41.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/f41-build-59189693-6571574/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1f01675370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6bc6cb06352146359bdcb49d41b3a71d', '-D', '/var/lib/mock/f41-build-59189693-6571574/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qp0fdtw3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target x86_64 /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1738627200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.PYM8PM
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ RPM_TOXENV=py313
+ FEDORA=41
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
Handling cmake from build-system.requires
Requirement satisfied: cmake
   (installed: cmake 3.30.8)
Handling numpy from build-system.requires
Requirement satisfied: numpy
   (installed: numpy 1.26.4)
Handling setuptools from build-system.requires
Requirement satisfied: setuptools
   (installed: setuptools 69.2.0)
Handling wheel from build-system.requires
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.43.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
   (installed: setuptools_scm 8.0.4)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
running dist_info
writing libsonata.egg-info/PKG-INFO
writing dependency_links to libsonata.egg-info/dependency_links.txt
writing requirements to libsonata.egg-info/requires.txt
writing top-level names to libsonata.egg-info/top_level.txt
reading manifest template 'MANIFEST.in'
warning: no files found matching 'extlib/nlohmann/json.hpp'
warning: no files found matching '*' under directory 'extlib/fmt/include'
warning: no files found matching '*' under directory 'extlib/fmt/src'
warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake'
warning: no files found matching 'extlib/fmt/CMakeLists.txt'
warning: no files found matching 'extlib/fmt/*.rst'
warning: no files found matching '*' under directory 'extlib/HighFive/include'
warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
warning: no files found matching 'extlib/HighFive/LICENSE'
warning: no files found matching '*' under directory 'python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
warning: no files found matching 'python/pybind11/CMakeLists.txt'
warning: no files found matching 'python/pybind11/LICENSE'
adding license file 'COPYING'
adding license file 'COPYING.LESSER'
adding license file 'AUTHORS.txt'
writing manifest file 'libsonata.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/libsonata-0.1.dev8.dist-info'
Handling numpy >=1.17.3 from hook generated metadata: Requires-Dist (libsonata)
Requirement satisfied: numpy >=1.17.3
   (installed: numpy 1.26.4)
Handling sphinx-bluebrain-theme ; extra == 'docs' from hook generated metadata: Requires-Dist (libsonata)
Ignoring alien requirement: sphinx-bluebrain-theme ; extra == 'docs'
+ cat /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-buildrequires
+ rm -rfv libsonata-0.1.dev8.dist-info/
removed 'libsonata-0.1.dev8.dist-info/top_level.txt'
removed 'libsonata-0.1.dev8.dist-info/METADATA'
removed 'libsonata-0.1.dev8.dist-info/COPYING'
removed 'libsonata-0.1.dev8.dist-info/COPYING.LESSER'
removed 'libsonata-0.1.dev8.dist-info/AUTHORS.txt'
removed directory 'libsonata-0.1.dev8.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.UC3avH
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.23
+ export CMAKE_GENERATOR=Ninja
+ CMAKE_GENERATOR=Ninja
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/sbin -DCMAKE_INSTALL_SBINDIR:PATH=sbin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTLIB_FROM_SUBMODULES:BOOL=OFF -DSONATA_CXX_WARNINGS:BOOL=OFF -DSONATA_PYTHON:BOOL=OFF -DSONATA_TESTS:BOOL=ON -DSONATA_VERSION=0.1.23
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 14.2.1
-- The CXX compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1")
CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include)
  CMakeLists.txt:79 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.
-- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
-- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3")
-- Configuring done (1.2s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_VERBOSE_MAKEFILE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j48 --verbose
Change Dir: '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build'
Run Build Command(s): /usr/bin/ninja-build -v -j 48
[1/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp
[2/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp
[3/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp
[4/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp
[5/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp
[6/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/src/version.cpp
[7/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp
[8/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF tests/CMakeFiles/unittests.dir/main.cpp.o.d -o tests/CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/main.cpp
[9/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp
[10/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF tests/CMakeFiles/unittests.dir/test_selection.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_selection.cpp
[11/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_node_sets.cpp
[12/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF tests/CMakeFiles/unittests.dir/test_edges.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_edges.cpp
[13/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp
[14/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp
[15/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF tests/CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_nodes.cpp
[16/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp
In file included from /usr/include/catch2/benchmark/catch_benchmark.hpp:14,
                 from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24,
                 from /usr/include/catch2/catch_all.hpp:25,
                 from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:1:
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector<double>&, double, double, int)’:
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
    8 |     REQUIRE(size == vec.size());
      |             ~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
    9 |     for (int i = 0; i < vec.size(); ++i) {
      |                     ~~^~~~~~~~~~~~
[17/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp
[18/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp
[19/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp
[20/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp
[21/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp
[22/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp
[23/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp
[24/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF tests/CMakeFiles/unittests.dir/test_config.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp
In file included from /usr/include/catch2/catch_test_macros.hpp:11,
                 from /usr/include/catch2/catch_template_test_macros.hpp:20,
                 from /usr/include/catch2/catch_all.hpp:37,
                 from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:1:
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_0()’:
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:50:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass> nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string<char>&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void; parser_callback_t = std::function<bool(int, nlohmann::json_abi_v3_11_3::detail::parse_event_t, nlohmann::json_abi_v3_11_3::basic_json<>&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result]
   50 |         CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON()));
      |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:3:
/usr/include/nlohmann/json.hpp:4015:23: note: declared here
 4015 |     static basic_json parse(InputType&& i,
      |                       ^~~~~
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_5()’:
/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/test_config.cpp:390:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass> nlohmann::json_abi_v3_11_3::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer, BinaryType, CustomBaseClass>::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string<char>&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector<unsigned char>; CustomBaseClass = void; parser_callback_t = std::function<bool(int, nlohmann::json_abi_v3_11_3::detail::parse_event_t, nlohmann::json_abi_v3_11_3::basic_json<>&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result]
  390 |         CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON()));
      |                       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/nlohmann/json.hpp:4015:23: note: declared here
 4015 |     static basic_json parse(InputType&& i,
      |                       ^~~~~
[25/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp
[26/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp
[27/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp
[28/33] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp
[29/33] : && /usr/bin/cmake -E rm -f libsonata.a && /usr/bin/ar qc libsonata.a  CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && :
[30/33] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp
[31/33] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o  /usr/lib64/libhdf5.so && :
[32/33] /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23  libsonata.so.0.1 libsonata.so && :
[33/33] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_config.cpp.o tests/CMakeFiles/unittests.dir/test_edges.cpp.o tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o tests/CMakeFiles/unittests.dir/test_nodes.cpp.o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -o tests/unittests  -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build  libsonata.so.0.1.23  /usr/lib64/libCatch2Main.so.3.7.1  /usr/lib64/libhdf5.so  /usr/lib64/libCatch2.so.3.7.1 && cd /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D "TEST_PROPERTIES=SKIP_RETURN_CODE;4" -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D TEST_DL_PATHS= -D TEST_DL_FRAMEWORK_PATHS= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build/tests/unittests-b12d07c_tests.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake
+ export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23
+ SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23
+ export SONATA_BUILD_TYPE=RelWithDebInfo
+ SONATA_BUILD_TYPE=RelWithDebInfo
+ export VERBOSE=
+ VERBOSE=
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir
Processing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
  running dist_info
  creating /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info
  writing /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/dependency_links.txt
  writing requirements to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'extlib/nlohmann/json.hpp'
  warning: no files found matching '*' under directory 'extlib/fmt/include'
  warning: no files found matching '*' under directory 'extlib/fmt/src'
  warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake'
  warning: no files found matching 'extlib/fmt/CMakeLists.txt'
  warning: no files found matching 'extlib/fmt/*.rst'
  warning: no files found matching '*' under directory 'extlib/HighFive/include'
  warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
  warning: no files found matching 'extlib/HighFive/LICENSE'
  warning: no files found matching '*' under directory 'python/pybind11/include'
  warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
  warning: no files found matching 'python/pybind11/CMakeLists.txt'
  warning: no files found matching 'python/pybind11/LICENSE'
  adding license file 'COPYING'
  adding license file 'COPYING.LESSER'
  adding license file 'AUTHORS.txt'
  writing manifest file '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-gubbtxhi/libsonata-0.1.23.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: libsonata
  Building wheel for libsonata (pyproject.toml): started
  Running command Building wheel for libsonata (pyproject.toml)
  WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.linux-x86_64-cpython-313
  creating build/lib.linux-x86_64-cpython-313/libsonata
  copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-313/libsonata
  running build_ext
  Re-run cmake no build system arguments
  CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
    Compatibility with CMake < 3.5 will be removed from a future version of
    CMake.
    Update the VERSION argument <min> value or use a ...<max> suffix to tell
    CMake that the project does not need compatibility with older versions.
  CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy):
    Compatibility with CMake < 3.5 will be removed from a future version of
    CMake.
    Update the VERSION argument <min> value or use a ...<max> suffix to tell
    CMake that the project does not need compatibility with older versions.
  -- The C compiler identification is GNU 14.2.1
  -- The CXX compiler identification is GNU 14.2.1
  -- Detecting C compiler ABI info
  -- Detecting C compiler ABI info - done
  -- Check for working C compiler: /usr/bin/gcc - skipped
  -- Detecting C compile features
  -- Detecting C compile features - done
  -- Detecting CXX compiler ABI info
  -- Detecting CXX compiler ABI info - done
  -- Check for working CXX compiler: /usr/bin/g++ - skipped
  -- Detecting CXX compile features
  -- Detecting CXX compile features - done
  -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
  -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1")
  CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package):
    Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
    --help-policy CMP0167" for policy details.  Use the cmake_policy command to
    set the policy and suppress this warning.
  Call Stack (most recent call first):
    /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include)
    CMakeLists.txt:79 (find_package)
  This warning is for project developers.  Use -Wno-dev to suppress it.
  -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
  -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3")
  CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message):
    Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
    are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
    the cmake_policy command to set the policy and suppress this warning, or
    preferably upgrade to using FindPython, either by calling it explicitly
    before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11.
  Call Stack (most recent call first):
    /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
    /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include)
    /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include)
    python/CMakeLists.txt:6 (find_package)
  This warning is for project developers.  Use -Wno-dev to suppress it.
  -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.3", minimum required is "3.7")
  -- Found PythonLibs: /usr/lib64/libpython3.13.so
  -- Performing Test HAS_FLTO
  -- Performing Test HAS_FLTO - Success
  -- Found pybind11: /usr/include (found version "2.13.6")
  -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets
  -- Configuring done (1.4s)
  -- Generating done (0.0s)
  -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/build/temp.linux-x86_64-cpython-313
  Change Dir: '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/build/temp.linux-x86_64-cpython-313'
  Run Build Command(s): /usr/bin/ninja-build -v -j48 sonata_python
  [1/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/hdf5_mutex.cpp
  [2/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/common.cpp
  [3/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/build/temp.linux-x86_64-cpython-313/src/version.cpp
  [4/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/utils.cpp
  [5/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edge_index.cpp
  [6/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/edges.cpp
  [7/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/report_reader.cpp
  [8/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/node_sets.cpp
  [9/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/nodes.cpp
  [10/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/population.cpp
  [11/14] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/src/config.cpp
  [12/14] : && /usr/bin/cmake -E rm -f libsonata.a && /usr/bin/ar qc libsonata.a  CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && :
  [13/14] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF python/CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o python/CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp
  /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp: In lambda function:
  /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare]
    424 |                  for (size_t i = 0; i < raw.shape(0); ++i) {
        |                                     ~~^~~~~~~~~~~~~~
  In file included from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/edges.h:13,
                   from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/config.h:20,
                   from /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:6:
  /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’:
  /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/python/bindings.cpp:430:46:   required from here
    430 |                  return Selection::fromValues(raw.data(0), raw.data(raw.shape(0)));
        |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare]
     77 |         if (v == range.second) {
        |             ~~^~~~~~~~~~~~~~~
  [14/14] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -DVERSION_INFO=\"0.1.23\" -O2 -g -DNDEBUG  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared  -o /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/build/lib.linux-x86_64-cpython-313/libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so python/CMakeFiles/sonata_python.dir/bindings.cpp.o  libsonata.a  /usr/lib64/libhdf5.so && :
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/libsonata
  copying build/lib.linux-x86_64-cpython-313/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/libsonata
  copying build/lib.linux-x86_64-cpython-313/libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/libsonata
  running install_egg_info
  running egg_info
  creating python/libsonata.egg-info
  writing python/libsonata.egg-info/PKG-INFO
  writing dependency_links to python/libsonata.egg-info/dependency_links.txt
  writing requirements to python/libsonata.egg-info/requires.txt
  writing top-level names to python/libsonata.egg-info/top_level.txt
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching 'extlib/nlohmann/json.hpp'
  warning: no files found matching '*' under directory 'extlib/fmt/include'
  warning: no files found matching '*' under directory 'extlib/fmt/src'
  warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake'
  warning: no files found matching 'extlib/fmt/CMakeLists.txt'
  warning: no files found matching 'extlib/fmt/*.rst'
  warning: no files found matching '*' under directory 'extlib/HighFive/include'
  warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
  warning: no files found matching 'extlib/HighFive/LICENSE'
  warning: no files found matching '*' under directory 'python/pybind11/include'
  warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
  warning: no files found matching 'python/pybind11/CMakeLists.txt'
  warning: no files found matching 'python/pybind11/LICENSE'
  adding license file 'COPYING'
  adding license file 'COPYING.LESSER'
  adding license file 'AUTHORS.txt'
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/libsonata-0.1.23-py3.13.egg-info
  running install_scripts
  creating build/bdist.linux-x86_64/wheel/libsonata-0.1.23.dist-info/WHEEL
  creating '/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir/pip-wheel-x1n7zte7/.tmp-57s3c1r4/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'libsonata/__init__.py'
  adding 'libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so'
  adding 'libsonata-0.1.23.dist-info/AUTHORS.txt'
  adding 'libsonata-0.1.23.dist-info/COPYING'
  adding 'libsonata-0.1.23.dist-info/COPYING.LESSER'
  adding 'libsonata-0.1.23.dist-info/METADATA'
  adding 'libsonata-0.1.23.dist-info/WHEEL'
  adding 'libsonata-0.1.23.dist-info/top_level.txt'
  adding 'libsonata-0.1.23.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for libsonata (pyproject.toml): finished with status 'done'
  Created wheel for libsonata: filename=libsonata-0.1.23-cp313-cp313-linux_x86_64.whl size=10497814 sha256=8362d295370faf554fc571f7c71959211e3567a78f386c36ed52f46d1635ac3b
  Stored in directory: /builddir/.cache/pip/wheels/8e/1d/aa/5b5f7f0c4c49728f2b7c558191afddbdad60488fd35670bd61
Successfully built libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zrKBVv
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
++ dirname /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build
+ mkdir /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.23
+ DESTDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: ""
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1.23
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so.0.1
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.so
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/libsonata.a
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/common.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/config.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/edges.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/nodes.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/population.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake
-- Installing: /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake
+ rm -rf /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT//usr/lib64/libsonata.a
++ ls /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=libsonata==0.1.23
+ '[' -z libsonata==0.1.23 ']'
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23
Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/pyproject-wheeldir
Processing ./pyproject-wheeldir/libsonata-0.1.23-cp313-cp313-linux_x86_64.whl
Installing collected packages: libsonata
Successfully installed libsonata-0.1.23
+ '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD
removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED
removed '/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.23.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23-35.fc41.x86_64-pyproject-record --prefix /usr -l libsonata
+ /usr/bin/find-debuginfo -j48 --strict-build-id -m -i --build-id-seed 0.1.23-35.fc41 --unique-debug-suffix -0.1.23-35.fc41.x86_64 --unique-debug-src-base libsonata-0.1.23-35.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-35.fc41.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j48
Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j48 /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
Scanned 36 directories and 54 files,
               processed 1 inodes,
               1 modified (0 replaced + 1 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/libsonata-0.1.23-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.esLDRl
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.23
+ pushd tests/data
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=48
+ /usr/bin/python3 generate.py
+ popd
~/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
+ /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j48 tests
Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build
Test project /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/redhat-linux-build
      Start  1: Selection
      Start  2: SpikeReader
      Start  3: SomaReportReader limits
      Start  4: SomaReportReader
      Start  5: ElementReportReader limits
      Start  6: ElementReportReader
      Start  7: NodePopulation
      Start  8: NodePopulationMove
      Start  9: NodePopulationSelectAll
      Start 10: NodePopulationmatchAttributeValues
      Start 11: NodePopulationmatchAttributeValues - int8_t
      Start 12: NodePopulationmatchAttributeValues - uint8_t
      Start 13: NodePopulationmatchAttributeValues - int16_t
      Start 14: NodePopulationmatchAttributeValues - uint16_t
      Start 15: NodePopulationmatchAttributeValues - int32_t
      Start 16: NodePopulationmatchAttributeValues - uint32_t
      Start 17: NodePopulationmatchAttributeValues - int64_t
      Start 18: NodePopulationmatchAttributeValues - uint64_t
      Start 19: NodeSetParse
      Start 20: NodeSetBasic
      Start 21: NodeSetCompound
      Start 22: NodeSet
      Start 23: EdgePopulation
      Start 24: EdgePopulationSelectAll
      Start 25: EdgePopulation::writeIndices
      Start 26: EdgeStorage
      Start 27: CircuitConfig
      Start 28: SimulationConfig
      Start 29: SONATA
      Start 30: unittests
 1/30 Test  #1: Selection .......................................   Passed    0.04 sec
 2/30 Test  #2: SpikeReader .....................................   Passed    0.04 sec
 3/30 Test  #3: SomaReportReader limits .........................   Passed    0.04 sec
 4/30 Test  #4: SomaReportReader ................................   Passed    0.03 sec
 5/30 Test  #5: ElementReportReader limits ......................   Passed    0.03 sec
 6/30 Test  #6: ElementReportReader .............................   Passed    0.03 sec
 7/30 Test  #7: NodePopulation ..................................   Passed    0.03 sec
 8/30 Test  #8: NodePopulationMove ..............................   Passed    0.03 sec
 9/30 Test  #9: NodePopulationSelectAll .........................   Passed    0.03 sec
10/30 Test #10: NodePopulationmatchAttributeValues ..............   Passed    0.03 sec
11/30 Test #11: NodePopulationmatchAttributeValues - int8_t .....   Passed    0.03 sec
12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t ....   Passed    0.03 sec
13/30 Test #13: NodePopulationmatchAttributeValues - int16_t ....   Passed    0.03 sec
14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ...   Passed    0.02 sec
15/30 Test #15: NodePopulationmatchAttributeValues - int32_t ....   Passed    0.02 sec
16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ...   Passed    0.02 sec
17/30 Test #17: NodePopulationmatchAttributeValues - int64_t ....   Passed    0.02 sec
18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ...   Passed    0.02 sec
19/30 Test #19: NodeSetParse ....................................   Passed    0.02 sec
20/30 Test #20: NodeSetBasic ....................................   Passed    0.02 sec
21/30 Test #21: NodeSetCompound .................................   Passed    0.02 sec
22/30 Test #22: NodeSet .........................................   Passed    0.02 sec
23/30 Test #24: EdgePopulationSelectAll .........................   Passed    0.01 sec
24/30 Test #23: EdgePopulation ..................................   Passed    0.02 sec
25/30 Test #25: EdgePopulation::writeIndices ....................   Passed    0.01 sec
26/30 Test #26: EdgeStorage .....................................   Passed    0.01 sec
27/30 Test #29: SONATA ..........................................   Passed    0.01 sec
28/30 Test #27: CircuitConfig ...................................   Passed    0.01 sec
29/30 Test #28: SimulationConfig ................................   Passed    0.01 sec
30/30 Test #30: unittests .......................................   Passed    0.04 sec
100% tests passed, 0 tests failed out of 30
Total Test time (real) =   0.08 sec
+ mkdir _empty
+ cp -rp python/tests _empty/
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=48
+ /usr/bin/pytest -v _empty/tests
============================= test session starts ==============================
platform linux -- Python 3.13.3, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23
configfile: pyproject.toml
collecting ... collected 78 items
_empty/tests/test_config.py::TestCircuitConfig::test_astrocyte_properties PASSED [  1%]
_empty/tests/test_config.py::TestCircuitConfig::test_basic PASSED        [  2%]
_empty/tests/test_config.py::TestCircuitConfig::test_biophysical_properties_raises PASSED [  3%]
_empty/tests/test_config.py::TestCircuitConfig::test_duplicate_population PASSED [  5%]
_empty/tests/test_config.py::TestCircuitConfig::test_endfeet_properties PASSED [  6%]
_empty/tests/test_config.py::TestCircuitConfig::test_expanded_json PASSED [  7%]
_empty/tests/test_config.py::TestCircuitConfig::test_get_population_properties PASSED [  8%]
_empty/tests/test_config.py::TestCircuitConfig::test_partial PASSED      [ 10%]
_empty/tests/test_config.py::TestCircuitConfig::test_shadowing_morphs PASSED [ 11%]
_empty/tests/test_config.py::TestCircuitConfig::test_spatial_directories PASSED [ 12%]
_empty/tests/test_config.py::TestCircuitConfig::test_vasculature_properties PASSED [ 14%]
_empty/tests/test_config.py::TestSimulationConfig::test_basic PASSED     [ 15%]
_empty/tests/test_config.py::TestSimulationConfig::test_empty_connection_overrides PASSED [ 16%]
_empty/tests/test_config.py::TestSimulationConfig::test_expanded_json PASSED [ 17%]
_empty/tests/test_config.py::TestSimulationConfig::test_run PASSED       [ 19%]
_empty/tests/test_config.py::TestSimulationConfig::test_simulation_config_failures PASSED [ 20%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailFloat PASSED [ 21%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailNegativeNodeIds PASSED [ 23%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailPopulation PASSED [ 24%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_CorrectStructure PASSED [ 25%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_FailCompoundWithInt PASSED [ 26%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_FaileRecursiveCompound PASSED [ 28%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingBasic PASSED [ 29%]
_empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingFile PASSED [ 30%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarAnded PASSED [ 32%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarEnum PASSED [ 33%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarInt PASSED [ 34%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarNodeId PASSED [ 35%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarPopulation PASSED [ 37%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarString PASSED [ 38%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetCompound PASSED [ 39%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetEmptyArray PASSED [ 41%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSet_toJSON PASSED [ 42%]
_empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_library_datatype PASSED [ 43%]
_empty/tests/test_population.py::TestSelection::test_basic PASSED        [ 44%]
_empty/tests/test_population.py::TestSelection::test_comparison PASSED   [ 46%]
_empty/tests/test_population.py::TestSelection::test_dtypes PASSED       [ 47%]
_empty/tests/test_population.py::TestSelection::test_from_ranges PASSED  [ 48%]
_empty/tests/test_population.py::TestSelection::test_from_values PASSED  [ 50%]
_empty/tests/test_population.py::TestSelection::test_from_values_empty PASSED [ 51%]
_empty/tests/test_population.py::TestSelection::test_union_intersection PASSED [ 52%]
_empty/tests/test_population.py::TestNodePopulation::test_attribute_names PASSED [ 53%]
_empty/tests/test_population.py::TestNodePopulation::test_enumeration_names PASSED [ 55%]
_empty/tests/test_population.py::TestNodePopulation::test_enumeration_values PASSED [ 56%]
_empty/tests/test_population.py::TestNodePopulation::test_get_attribute PASSED [ 57%]
_empty/tests/test_population.py::TestNodePopulation::test_get_dynamics_attribute PASSED [ 58%]
_empty/tests/test_population.py::TestNodePopulation::test_match_values PASSED [ 60%]
_empty/tests/test_population.py::TestNodePopulation::test_name PASSED    [ 61%]
_empty/tests/test_population.py::TestNodePopulation::test_select_all PASSED [ 62%]
_empty/tests/test_population.py::TestNodePopulation::test_size PASSED    [ 64%]
_empty/tests/test_population.py::TestEdgePopulation::test_afferent_edges PASSED [ 65%]
_empty/tests/test_population.py::TestEdgePopulation::test_connecting_edges PASSED [ 66%]
_empty/tests/test_population.py::TestEdgePopulation::test_efferent_edges PASSED [ 67%]
_empty/tests/test_population.py::TestEdgePopulation::test_library_enumeration PASSED [ 69%]
_empty/tests/test_population.py::TestEdgePopulation::test_select_all PASSED [ 70%]
_empty/tests/test_population.py::TestEdgePopulation::test_source PASSED  [ 71%]
_empty/tests/test_population.py::TestEdgePopulation::test_source_nodes PASSED [ 73%]
_empty/tests/test_population.py::TestEdgePopulation::test_target PASSED  [ 74%]
_empty/tests/test_population.py::TestEdgePopulation::test_target_nodes PASSED [ 75%]
_empty/tests/test_population.py::TestMisc::test_path_ctor PASSED         [ 76%]
_empty/tests/test_reports.py::TestSpikeReader::test_getTimes_from_population PASSED [ 78%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_all_populations PASSED [ 79%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_inexistant_population PASSED [ 80%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_population PASSED [ 82%]
_empty/tests/test_reports.py::TestSpikeReader::test_get_spikes_from_population PASSED [ 83%]
_empty/tests/test_reports.py::TestSomaReportReader::test_block_gap_limit PASSED [ 84%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_all_population PASSED [ 85%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_inexistant_population PASSED [ 87%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_node_id_element_id_mapping PASSED [ 88%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_population PASSED [ 89%]
_empty/tests/test_reports.py::TestSomaReportReader::test_get_reports_from_population PASSED [ 91%]
_empty/tests/test_reports.py::TestElementReportReader::test_block_gap_limit PASSED [ 92%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_all_population PASSED [ 93%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_inexistant_population PASSED [ 94%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_node_id_element_id_mapping PASSED [ 96%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_node_ids PASSED [ 97%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_population PASSED [ 98%]
_empty/tests/test_reports.py::TestElementReportReader::test_get_reports_from_population PASSED [100%]
============================== 78 passed in 0.33s ==============================
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: libsonata-0.1.23-35.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.nSTeoJ
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.SSxaPH
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/licenses/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsonata = 0.1.23-35.fc41 libsonata(x86-64) = 0.1.23-35.fc41 libsonata.so.0.1()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: libsonata-devel-0.1.23-35.fc41.x86_64
Provides: libsonata-devel = 0.1.23-35.fc41 libsonata-devel(x86-64) = 0.1.23-35.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsonata.so.0.1()(64bit)
Processing files: python3-libsonata-0.1.23-35.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9ydDpD
+ umask 022
+ cd /builddir/build/BUILD/libsonata-0.1.23-build
+ cd libsonata-0.1.23
+ DOCDIR=/builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/README.rst /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata
+ cp -pr /builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT/usr/share/doc/python3-libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-libsonata = 0.1.23-35.fc41 python3-libsonata = 0.1.23-35.fc41 python3-libsonata(x86-64) = 0.1.23-35.fc41 python3.13-libsonata = 0.1.23-35.fc41 python3.13dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH)
Processing files: libsonata-debugsource-0.1.23-35.fc41.x86_64
Provides: libsonata-debugsource = 0.1.23-35.fc41 libsonata-debugsource(x86-64) = 0.1.23-35.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: libsonata-debuginfo-0.1.23-35.fc41.x86_64
Provides: debuginfo(build-id) = ce98eeacca30f601a30ad2d91aa394aed2d02932 libsonata-debuginfo = 0.1.23-35.fc41 libsonata-debuginfo(x86-64) = 0.1.23-35.fc41 libsonata.so.0.1.23-0.1.23-35.fc41.x86_64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(x86-64) = 0.1.23-35.fc41
Processing files: python3-libsonata-debuginfo-0.1.23-35.fc41.x86_64
Provides: debuginfo(build-id) = 075918992b9392b0d0d05767a372e276f82bc236 python-libsonata-debuginfo = 0.1.23-35.fc41 python3-libsonata-debuginfo = 0.1.23-35.fc41 python3-libsonata-debuginfo(x86-64) = 0.1.23-35.fc41 python3.13-libsonata-debuginfo = 0.1.23-35.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(x86-64) = 0.1.23-35.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.23-build/BUILDROOT
Wrote: /builddir/build/SRPMS/libsonata-0.1.23-35.fc41.src.rpm
Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-35.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-35.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-0.1.23-35.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-35.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-35.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-debuginfo-0.1.23-35.fc41.x86_64.rpm
Child return code was: 0