Mock Version: 6.0
Mock Version: 6.0
Mock Version: 6.0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f42-build-56672499-6545461/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff8bf39370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e43a2663ad3a4208bbbc179dabc34d6c', '-D', '/var/lib/mock/f42-build-56672499-6545461/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1736985600
Wrote: /builddir/build/SRPMS/fastx_toolkit-0.0.14-37.fc42.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'], chrootPath='/var/lib/mock/f42-build-56672499-6545461/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff8bf39370>timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ba54ee9d6a63484fa3aaf1529e1acf5a', '-D', '/var/lib/mock/f42-build-56672499-6545461/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.d9fb6x_7:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps /builddir/build/SPECS/fastx_toolkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1736985600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.8ZPeh9
+ umask 022
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ test -d /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ /usr/bin/rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QSqtOG
+ umask 022
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ rm -rf fastx_toolkit-0.0.14
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/fastx_toolkit-0.0.14.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd fastx_toolkit-0.0.14
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (fastx_toolkit-gcc47.patch):
+ echo 'Patch #0 (fastx_toolkit-gcc47.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fastx_toolkit-gcc47.patch --fuzz=0
patching file src/libfastx/sequence_alignment.h
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.5c7XZa
+ umask 022
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd fastx_toolkit-0.0.14
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-01-05 21:15:52.000000000 +0000
+++ ./configure	2025-01-24 00:36:12.317842352 +0000
@@ -1933,7 +1933,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2025-01-24 00:36:12.317842352 +0000
+++ ./configure	2025-01-24 00:36:12.344842528 +0000
@@ -15681,7 +15681,7 @@
 compiler='`$ECHO "X$compiler" | $Xsed -e "$delay_single_quote_subst"`'
 GCC='`$ECHO "X$GCC" | $Xsed -e "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "X$lt_cv_sys_global_symbol_pipe" | $Xsed -e "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "X$lt_cv_sys_global_symbol_to_cdecl" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address" | $Xsed -e "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`'
 objdir='`$ECHO "X$objdir" | $Xsed -e "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config/config.guess
++ basename ./config/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config/config.sub
++ basename ./config/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=aarch64-redhat-linux-gnu --host=aarch64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for aarch64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking build system type... aarch64-redhat-linux-gnu
checking host system type... aarch64-redhat-linux-gnu
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for aarch64-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for aarch64-redhat-linux-gnu-ar... no
checking for ar... ar
checking for aarch64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for aarch64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking how to run the C++ preprocessor... g++ -E
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for long long int... yes
checking for ISO C++ TR1 include files... yes
checking whether g++ supports C++11 features by default... yes
checking for aarch64-redhat-linux-gnu-pkg-config... /usr/bin/aarch64-redhat-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GTEXTUTILS... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating m4/Makefile
config.status: creating src/Makefile
config.status: creating src/libfastx/Makefile
config.status: creating src/fastx_clipper/Makefile
config.status: creating src/fastq_to_fasta/Makefile
config.status: creating src/fastx_quality_stats/Makefile
config.status: creating src/fastq_quality_converter/Makefile
config.status: creating src/fastx_trimmer/Makefile
config.status: creating src/fastq_quality_filter/Makefile
config.status: creating src/fastq_quality_trimmer/Makefile
config.status: creating src/fastx_artifacts_filter/Makefile
config.status: creating src/fastx_reverse_complement/Makefile
config.status: creating src/fastx_collapser/Makefile
config.status: creating src/fastx_uncollapser/Makefile
config.status: creating src/seqalign_test/Makefile
config.status: creating src/fasta_formatter/Makefile
config.status: creating src/fasta_nucleotide_changer/Makefile
config.status: creating src/fastx_renamer/Makefile
config.status: creating src/fastq_masker/Makefile
config.status: creating galaxy/Makefile
config.status: creating galaxy/tools/Makefile
config.status: creating galaxy/tools/fastx_toolkit/Makefile
config.status: creating galaxy/test-data/Makefile
config.status: creating galaxy/static/Makefile
config.status: creating galaxy/static/fastx_icons/Makefile
config.status: creating galaxy/tool-data/Makefile
config.status: creating scripts/Makefile
config.status: creating build_scripts/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+ make -j12 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
make  all-recursive
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
Making all in m4
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
Making all in src
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
Making all in libfastx
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o chomp.o chomp.c
gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx.o fastx.c
gcc -DHAVE_CONFIG_H -I. -I../..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_args.o fastx_args.c
g++ -DHAVE_CONFIG_H -I. -I../..     -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o sequence_alignment.o sequence_alignment.cpp
rm -f libfastx.a
ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o 
ranlib libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
Making all in fastx_clipper
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
g++ -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_clipper.o fastx_clipper.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a  
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_clipper fastx_clipper.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
Making all in fastx_trimmer
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_trimmer.o fastx_trimmer.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_trimmer fastx_trimmer.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
Making all in fastx_quality_stats
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_quality_stats.o fastx_quality_stats.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_quality_stats fastx_quality_stats.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
Making all in fastq_quality_converter
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_converter.o fastq_quality_converter.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_converter fastq_quality_converter.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
Making all in fastq_to_fasta
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_to_fasta.o fastq_to_fasta.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_to_fasta fastq_to_fasta.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
Making all in fastq_quality_filter
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_filter.o fastq_quality_filter.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_filter fastq_quality_filter.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
Making all in fastq_quality_trimmer
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_quality_trimmer fastq_quality_trimmer.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
Making all in fastx_artifacts_filter
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_artifacts_filter fastx_artifacts_filter.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
Making all in fastx_reverse_complement
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_reverse_complement.o fastx_reverse_complement.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_reverse_complement fastx_reverse_complement.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
Making all in fastx_collapser
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
g++ -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_collapser.o fastx_collapser.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a  
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_collapser fastx_collapser.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
Making all in fastx_uncollapser
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
g++ -DHAVE_CONFIG_H -I. -I../..   -I/usr/include/gtextutils -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_uncollapser.o fastx_uncollapser.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a  
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_uncollapser fastx_uncollapser.o  -lgtextutils ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
Making all in seqalign_test
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
g++ -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o seqalign_test.o seqalign_test.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o seqalign_test seqalign_test.o ../libfastx/libfastx.a 
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o seqalign_test seqalign_test.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
Making all in fasta_formatter
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
g++ -DHAVE_CONFIG_H -I. -I../..   -I/usr/include/gtextutils -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fasta_formatter.o fasta_formatter.cpp
/bin/sh ../../libtool  --tag=CXX   --mode=link g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a  
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_formatter fasta_formatter.o  -lgtextutils ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
Making all in fasta_nucleotide_changer
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fasta_nucleotide_changer fasta_nucleotide_changer.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
Making all in fastx_renamer
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastx_renamer.o fastx_renamer.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastx_renamer fastx_renamer.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
Making all in fastq_masker
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
gcc -DHAVE_CONFIG_H -I. -I../..   -I../../src/libfastx   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o fastq_masker.o fastq_masker.c
/bin/sh ../../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o fastq_masker fastq_masker.o ../libfastx/libfastx.a  
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o fastq_masker fastq_masker.o  ../libfastx/libfastx.a
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
Making all in doc
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
Making all in galaxy
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
Making all in tools
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
Making all in fastx_toolkit
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
Making all in test-data
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
Making all in static
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
Making all in fastx_icons
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
Making all in tool-data
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
Making all in scripts
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
Making all in build_scripts
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.N7h3Dv
+ umask 022
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ '[' /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
++ dirname /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ mkdir /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd fastx_toolkit-0.0.14
+ rm -rf /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
+ make install DESTDIR=/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT 'INSTALL=install -p'
Making install in m4
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
make[2]: Nothing to be done for 'install-exec-am'.
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/aclocal'
 install -p -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/aclocal'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/m4'
Making install in src
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
Making install in libfastx
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/libfastx'
Making install in fastx_clipper
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_clipper '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_clipper /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_clipper
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_clipper'
Making install in fastx_trimmer
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_trimmer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_trimmer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_trimmer
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_trimmer'
Making install in fastx_quality_stats
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_quality_stats '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_quality_stats /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_quality_stats
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_quality_stats'
Making install in fastq_quality_converter
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastq_quality_converter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastq_quality_converter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_converter
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_converter'
Making install in fastq_to_fasta
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastq_to_fasta '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastq_to_fasta /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_to_fasta
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_to_fasta'
Making install in fastq_quality_filter
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastq_quality_filter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastq_quality_filter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_filter
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_filter'
Making install in fastq_quality_trimmer
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastq_quality_trimmer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastq_quality_trimmer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_quality_trimmer
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_quality_trimmer'
Making install in fastx_artifacts_filter
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_artifacts_filter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_artifacts_filter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_artifacts_filter
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_artifacts_filter'
Making install in fastx_reverse_complement
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_reverse_complement '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_reverse_complement /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_reverse_complement
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_reverse_complement'
Making install in fastx_collapser
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_collapser '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_collapser /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_collapser
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_collapser'
Making install in fastx_uncollapser
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_uncollapser '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_uncollapser /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_uncollapser
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_uncollapser'
Making install in seqalign_test
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/seqalign_test'
Making install in fasta_formatter
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fasta_formatter '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fasta_formatter /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fasta_formatter
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_formatter'
Making install in fasta_nucleotide_changer
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fasta_nucleotide_changer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fasta_nucleotide_changer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fasta_nucleotide_changer
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fasta_nucleotide_changer'
Making install in fastx_renamer
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastx_renamer '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastx_renamer /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastx_renamer
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastx_renamer'
Making install in fastq_masker
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
  /bin/sh ../../libtool   --mode=install install -p fastq_masker '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
libtool: install: install -p fastq_masker /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin/fastq_masker
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src/fastq_masker'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/src'
Making install in doc
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/doc'
Making install in galaxy
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
Making install in tools
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
Making install in fastx_toolkit
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools/fastx_toolkit'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tools'
Making install in test-data
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/test-data'
Making install in static
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
Making install in fastx_icons
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static/fastx_icons'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[4]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/static'
Making install in tool-data
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy/tool-data'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[3]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/galaxy'
Making install in scripts
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
 /usr/bin/mkdir -p '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
 install -p fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/scripts'
Making install in build_scripts
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/build_scripts'
make[1]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
make[2]: Entering directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
make[1]: Leaving directory '/builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14'
+ mkdir /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit
+ cp -a galaxy/ /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit
+ rm /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_c_long_long.m4 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_cxx_compile_stdcxx_11.m4 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/aclocal/ax_cxx_header_stdcxx_tr1.m4
+ find /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT//usr/share/fastx_toolkit/galaxy/ -name 'Makefile\.*' -delete
+ /usr/bin/find-debuginfo -j12 --strict-build-id -m -i --build-id-seed 0.0.14-37.fc42 --unique-debug-suffix -0.0.14-37.fc42.aarch64 --unique-debug-src-base fastx_toolkit-0.0.14-37.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14
find-debuginfo: starting
Extracting debug info from 15 files
DWARF-compressing 15 files
sepdebugcrcfix: Updated 15 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/fastx_toolkit-0.0.14-37.fc42.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastx_nucleotide_distribution_graph.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/bin/fastx_nucleotide_distribution_line_graph.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/bin/fastq_quality_boxplot_graph.sh from /usr/bin/env bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j12 /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
Scanned 38 directories and 148 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/fastx_toolkit-0.0.14-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: fastx_toolkit-0.0.14-37.fc42.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.gkHC2O
+ umask 022
+ cd /builddir/build/BUILD/fastx_toolkit-0.0.14-build
+ cd fastx_toolkit-0.0.14
+ DOCDIR=/builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/AUTHORS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/COPYING /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/NEWS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/README /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ cp -pr /builddir/build/BUILD/fastx_toolkit-0.0.14-build/fastx_toolkit-0.0.14/THANKS /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT/usr/share/doc/fastx_toolkit
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: fastx_toolkit = 0.0.14-37.fc42 fastx_toolkit(aarch-64) = 0.0.14-37.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgtextutils-0.7.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(Carp) perl(Data::Dumper) perl(GD::Graph::bars) perl(Getopt::Long) perl(IO::Handle) perl(PerlIO::gzip) perl(strict) perl(warnings) rtld(GNU_HASH)
Processing files: fastx_toolkit-galaxy-0.0.14-37.fc42.aarch64
Provides: fastx_toolkit-galaxy = 0.0.14-37.fc42 fastx_toolkit-galaxy(aarch-64) = 0.0.14-37.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: fastx_toolkit-debugsource-0.0.14-37.fc42.aarch64
Provides: fastx_toolkit-debugsource = 0.0.14-37.fc42 fastx_toolkit-debugsource(aarch-64) = 0.0.14-37.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: fastx_toolkit-debuginfo-0.0.14-37.fc42.aarch64
Provides: debuginfo(build-id) = 281d0d9efbacbf8c10217f17065fa0dbd3caab4b debuginfo(build-id) = 2962024d0c68921ef538132d4119d9915fc4fc95 debuginfo(build-id) = 4ab23ae20df5a5cf23a2bbcad71fbb9d7b0bfa10 debuginfo(build-id) = 501ceca92fd58b975342c01d2c0b55816e98986a debuginfo(build-id) = 533f448355b357bf22ba9cb1ef4de3bde073d5cf debuginfo(build-id) = 5a3c794e56e08e00abb196d3493d5061395654a0 debuginfo(build-id) = 632491f50cf4bb6762d47f749527ad8b1febcd6e debuginfo(build-id) = 6ac49980d985c3844858dc8d64b2bb55940cfbbe debuginfo(build-id) = 74d19b89f35e45e6c0fca1abc0ca4fd0998f494f debuginfo(build-id) = 79d6acd73ca9cd133e8cef42eecc315dc63077bd debuginfo(build-id) = 8276ccdfc61996a1dbad29550e240ce20da85ad8 debuginfo(build-id) = d2878e3f7784a268a307c6ded07cb0c660ad3787 debuginfo(build-id) = f6a8e4ec859247880469b538e7370ff96ff80365 debuginfo(build-id) = fa203ddcdd109a26b5d092da5e2f0089cfc45413 debuginfo(build-id) = fd6143acedc1e1e44152add7e6575c4eeaf727c5 fastx_toolkit-debuginfo = 0.0.14-37.fc42 fastx_toolkit-debuginfo(aarch-64) = 0.0.14-37.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fastx_toolkit-debugsource(aarch-64) = 0.0.14-37.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/fastx_toolkit-0.0.14-build/BUILDROOT
Wrote: /builddir/build/RPMS/fastx_toolkit-debugsource-0.0.14-37.fc42.aarch64.rpm
Wrote: /builddir/build/RPMS/fastx_toolkit-galaxy-0.0.14-37.fc42.aarch64.rpm
Wrote: /builddir/build/RPMS/fastx_toolkit-0.0.14-37.fc42.aarch64.rpm
Wrote: /builddir/build/RPMS/fastx_toolkit-debuginfo-0.0.14-37.fc42.aarch64.rpm
Child return code was: 0