Mock Version: 5.9 Mock Version: 5.9 Mock Version: 5.9 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], chrootPath='/var/lib/mock/f42-build-55150588-6532855/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a89161dd7a1f43d982332da5f35b0dfc', '-D', '/var/lib/mock/f42-build-55150588-6532855/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.99.0-2.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], chrootPath='/var/lib/mock/f42-build-55150588-6532855/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '95586d0c7e0c4374981b1778746cefb5', '-D', '/var/lib/mock/f42-build-55150588-6532855/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.rn3rmi_n:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1729814400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.sdtqIb + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + test -d /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Fl4Nvz + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + rm -rf avogadrolibs-1.99.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.99.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.99.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.98.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar -xf /builddir/build/SOURCES/molecules-1.98.0.tar.gz + mv molecules-1.98.0 molecules + tar -xf /builddir/build/SOURCES/crystals-1.98.0.tar.gz + mv crystals-1.98.0 crystals + tar -xf /builddir/build/SOURCES/fragments-1.99.0.tar.gz + mv fragments-1.99.0 fragments + mv molecules/LICENSE molecules/LICENSE-molecules + mv fragments/LICENSE fragments/LICENSE-fragments + echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):' Patch #0 (avogadro2-libs-set_pythonpath.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt Hunk #1 succeeded at 34 (offset -7 lines). patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt Hunk #1 succeeded at 20 (offset -4 lines). Patch #1 (avogadro2-libs-1.99.0-do_not_download_external_files.patch): + echo 'Patch #1 (avogadro2-libs-1.99.0-do_not_download_external_files.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/insertfragment/CMakeLists.txt Hunk #1 succeeded at 10 (offset -3 lines). patching file avogadro/qtplugins/templatetool/CMakeLists.txt Patch #2 (avogadro2-libs-1.98.1-use_upstream_cmake_config.patch): + echo 'Patch #2 (avogadro2-libs-1.98.1-use_upstream_cmake_config.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file CMakeLists.txt patching file cmake/FindEigen3.cmake patching file avogadro/core/CMakeLists.txt patching file cmake/FindSPGLIB.cmake + mv avogenerators-1.98.0 avogadrogenerators + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + mv fragments/README.md fragments/README-fragments.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ecO4yc + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.13 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -DOpenBabel3_INCLUDE_DIR:PATH=/usr/include/openbabel3 -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.99.0 -- Component omp of Spglib: NOT FOUND -- Component fortran of Spglib: NOT FOUND -- Found package: Spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") found components: C -- Found MMTF: /usr/include -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3") -- Found OpenBabel3: /usr/include/openbabel3 We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/terachem.py -- Found LibArchive: /usr/lib64/libarchive.so (found version "3.7.7") -- Found Doxygen: /usr/bin/doxygen (found version "1.12.0") found components: doxygen dot -- Configuring done (2.3s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_BOOST_PYTHON USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build + /usr/bin/make -O -j6 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -B/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/CMakeFiles /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/depend /usr/bin/make -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/depend /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend /usr/bin/make -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/depend /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/CMakeFiles/pugixml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core/CMakeFiles/Headers.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/build /usr/bin/make -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/build /usr/bin/make -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/build /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/Headers.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Built target Headers make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/resdata /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/resdata /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 0%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -MF CMakeFiles/gwavi.dir/fileio.c.o.d -o CMakeFiles/gwavi.dir/fileio.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/fileio.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -MF CMakeFiles/gwavi.dir/gwavi.c.o.d -o CMakeFiles/gwavi.dir/gwavi.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/gwavi.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/CMakeFiles/struct.dir/struct/struct_endian.c.o -MF CMakeFiles/struct.dir/struct/struct_endian.c.o.d -o CMakeFiles/struct.dir/struct/struct_endian.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct/struct_endian.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/Core.dir/build.make avogadro/core/CMakeFiles/Core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core/CMakeFiles/Core.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/Core.dir/build.make avogadro/core/CMakeFiles/Core.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -MF CMakeFiles/gwavi.dir/avi-utils.c.o.d -o CMakeFiles/gwavi.dir/avi-utils.c.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/avi-utils.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Linking C static library libgwavi.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi && /usr/bin/cmake -P CMakeFiles/gwavi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gwavi.dir/link.txt --verbose=1 /usr/bin/ar qc libgwavi.a CMakeFiles/gwavi.dir/gwavi.c.o CMakeFiles/gwavi.dir/fileio.c.o "CMakeFiles/gwavi.dir/avi-utils.c.o" /usr/bin/ranlib libgwavi.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Built target gwavi make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 0%] Building C object thirdparty/CMakeFiles/struct.dir/struct/struct.c.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty && /usr/bin/gcc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/angleiterator.cpp.o -MF CMakeFiles/Core.dir/angleiterator.cpp.o.d -o CMakeFiles/Core.dir/angleiterator.cpp.o -c 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-grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/elements.cpp.o -MF CMakeFiles/Core.dir/elements.cpp.o.d -o CMakeFiles/Core.dir/elements.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Building CXX object avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/atomutilities.cpp.o -MF CMakeFiles/Core.dir/atomutilities.cpp.o.d -o CMakeFiles/Core.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:113:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM[(double &)&pos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: ‘MEM[(double &)&pos3d + 16]’ was declared here 70 | Vector3 pos3d; | ^~~~~ In file included from /usr/include/c++/14/istream:41, from /usr/include/c++/14/sstream:40, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:6: In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:173:76: /usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d]’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:181:76: /usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 8]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ In member function ‘std::basic_ostream >::operator<<(double)’, inlined from ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:189:76: /usr/include/c++/14/ostream:229:25: warning: ‘MEM[(Scalar &)&fpos3d + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 229 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp: In member function ‘Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.cpp:71:11: note: ‘MEM[(Scalar &)&fpos3d + 16]’ was declared here 71 | Vector3 fpos3d; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/Core.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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/usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/crystaltools.cpp.o -MF CMakeFiles/Core.dir/crystaltools.cpp.o.d -o CMakeFiles/Core.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/bodr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro 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CMakeFiles/Core.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mutex.cpp.o -MF CMakeFiles/Core.dir/mutex.cpp.o.d -o CMakeFiles/Core.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/gaussianset.cpp.o -MF CMakeFiles/Core.dir/gaussianset.cpp.o.d -o CMakeFiles/Core.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/graph.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/graph.cpp.o -MF CMakeFiles/Core.dir/graph.cpp.o.d -o CMakeFiles/Core.dir/graph.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:311:5: warning: ‘edgeIndex’ may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:299:10: note: ‘edgeIndex’ was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp: In member function ‘Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:421:17: warning: ‘MEM[(long unsigned int * &)&changeTo2]’ may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:422:17: warning: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:392:26: note: ‘MEM[(long unsigned int * &)&changeTo2 + 8]’ was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:423:17: warning: ‘MEM[(long unsigned int * &)&changeTo1]’ may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:424:17: warning: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.cpp:405:26: note: ‘MEM[(long unsigned int * &)&changeTo1 + 8]’ was declared here 405 | std::array changeTo1; | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse ../../thirdparty/libpugixml.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/neighborperceiver.cpp.o -MF CMakeFiles/Core.dir/neighborperceiver.cpp.o.d -o CMakeFiles/Core.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/mesh.cpp.o -MF CMakeFiles/Core.dir/mesh.cpp.o.d -o CMakeFiles/Core.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Core::Mesh::smooth(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.196369].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp: In member function ‘Avogadro::Core::Mesh::smooth(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.cpp:189:46: note: ‘’ declared here 189 | Array planarList(m_vertices.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro 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CMakeFiles/Core.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slatersettools.cpp.o -MF CMakeFiles/Core.dir/slatersettools.cpp.o.d -o CMakeFiles/Core.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/ringperceiver.cpp.o -MF CMakeFiles/Core.dir/ringperceiver.cpp.o.d -o CMakeFiles/Core.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/unitcell.cpp.o -MF CMakeFiles/Core.dir/unitcell.cpp.o.d -o CMakeFiles/Core.dir/unitcell.cpp.o -c 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-grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/version.cpp.o -MF CMakeFiles/Core.dir/version.cpp.o.d -o CMakeFiles/Core.dir/version.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/sharedmutex.cpp.o -MF CMakeFiles/Core.dir/sharedmutex.cpp.o.d -o CMakeFiles/Core.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/sharedmutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/spacegroups.cpp.o -MF CMakeFiles/Core.dir/spacegroups.cpp.o.d -o CMakeFiles/Core.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/variantmap.cpp.o -MF CMakeFiles/Core.dir/variantmap.cpp.o.d -o CMakeFiles/Core.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/avospglib.cpp.o -MF CMakeFiles/Core.dir/avospglib.cpp.o.d -o CMakeFiles/Core.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 6%] Building CXX object avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/slaterset.cpp.o -MF CMakeFiles/Core.dir/slaterset.cpp.o.d -o CMakeFiles/Core.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 4%] Building CXX object avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/molecule.cpp.o -MF CMakeFiles/Core.dir/molecule.cpp.o.d -o CMakeFiles/Core.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In copy constructor ‘Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:37:1: warning: when initialized here [-Wreorder] 37 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h: In constructor ‘Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:857:24: warning: ‘Avogadro::Core::Molecule::m_atomicNumbers’ will be initialized after [-Wreorder] 857 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850:19: warning: ‘Eigen::VectorXd Avogadro::Core::Molecule::m_frozenAtomMask’ [-Wreorder] 850 | Eigen::VectorXd m_frozenAtomMask; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:133:1: warning: when initialized here [-Wreorder] 133 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtom(Avogadro::Index, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:367:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 367 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:376:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 376 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘bool Avogadro::Core::Molecule::frozenAtom(Avogadro::Index) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:386:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 386 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp: In member function ‘void Avogadro::Core::Molecule::setFrozenAtomAxis(Avogadro::Index, int, bool)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:398:31: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | if (m_frozenAtomMask.rows() != 3 * m_atomicNumbers.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.cpp:407:18: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 407 | if (atomId * 3 <= m_frozenAtomMask.rows() - 3) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 5%] Building CXX object avogadro/core/CMakeFiles/Core.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/g++ -DCore_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/Core.dir/residue.cpp.o -MF CMakeFiles/Core.dir/residue.cpp.o.d -o CMakeFiles/Core.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/Core.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.99.0 CMakeFiles/Core.dir/angleiterator.cpp.o CMakeFiles/Core.dir/atomutilities.cpp.o CMakeFiles/Core.dir/coordinateblockgenerator.cpp.o CMakeFiles/Core.dir/crystaltools.cpp.o CMakeFiles/Core.dir/cube.cpp.o CMakeFiles/Core.dir/elements.cpp.o CMakeFiles/Core.dir/dihedraliterator.cpp.o CMakeFiles/Core.dir/gaussianset.cpp.o CMakeFiles/Core.dir/gaussiansettools.cpp.o CMakeFiles/Core.dir/graph.cpp.o CMakeFiles/Core.dir/layer.cpp.o CMakeFiles/Core.dir/layermanager.cpp.o CMakeFiles/Core.dir/mesh.cpp.o CMakeFiles/Core.dir/molecule.cpp.o CMakeFiles/Core.dir/mutex.cpp.o CMakeFiles/Core.dir/nameatomtyper.cpp.o CMakeFiles/Core.dir/neighborperceiver.cpp.o CMakeFiles/Core.dir/residue.cpp.o CMakeFiles/Core.dir/ringperceiver.cpp.o CMakeFiles/Core.dir/secondarystructure.cpp.o CMakeFiles/Core.dir/slaterset.cpp.o CMakeFiles/Core.dir/slatersettools.cpp.o CMakeFiles/Core.dir/spacegroups.cpp.o CMakeFiles/Core.dir/symbolatomtyper.cpp.o CMakeFiles/Core.dir/unitcell.cpp.o CMakeFiles/Core.dir/variantmap.cpp.o CMakeFiles/Core.dir/version.cpp.o CMakeFiles/Core.dir/sharedmutex.cpp.o CMakeFiles/Core.dir/avospglib.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libsymspg.so.2.5.0 -lm cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.99.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp: In function ‘__static_initialization_and_destruction_0’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 162 | } // namespace Avogadro | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Built target Core make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/depend /usr/bin/make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/depend /usr/bin/make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc/CMakeFiles/Calc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io/CMakeFiles/IO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrow_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrow_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/arrow_vs.h arrow_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/cylinders_fs.h cylinders_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 8%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/cylinders_vs.h cylinders_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/dashedline_fs.h dashedline_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedline_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/dashedline_vs.h dashedline_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/mesh_fs.h mesh_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_opaque_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_opaque_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 10%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/mesh_vs.h mesh_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 10%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_first_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_first_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/solid_first_fs.h solid_first_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 10%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solid_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/solid_vs.h solid_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 10%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 10%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Encoding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/CMakeFiles/Rendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/defaultmodel.cpp.o -MF CMakeFiles/Calc.dir/defaultmodel.cpp.o.d -o CMakeFiles/Calc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemodel.cpp.o -MF CMakeFiles/Calc.dir/chargemodel.cpp.o.d -o CMakeFiles/Calc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcsector.cpp.o -MF CMakeFiles/Rendering.dir/arcsector.cpp.o.d -o CMakeFiles/Rendering.dir/arcsector.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.204636].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp: In member function ‘Avogadro::Rendering::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcsector.cpp:28:33: note: ‘’ declared here 28 | Array verts(numVerts); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 12%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmsgpackformat.cpp.o -MF CMakeFiles/IO.dir/cmsgpackformat.cpp.o.d -o CMakeFiles/IO.dir/cmsgpackformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/chargemanager.cpp.o -MF CMakeFiles/Calc.dir/chargemanager.cpp.o.d -o CMakeFiles/Calc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformat.cpp.o -MF CMakeFiles/IO.dir/fileformat.cpp.o.d -o CMakeFiles/IO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arcstrip.cpp.o -MF CMakeFiles/Rendering.dir/arcstrip.cpp.o.d -o CMakeFiles/Rendering.dir/arcstrip.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.206050].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp: In member function ‘Avogadro::Rendering::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arcstrip.cpp:23:39: note: ‘’ declared here 23 | Core::Array verts(numVerts); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/fileformatmanager.cpp.o -MF CMakeFiles/IO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/IO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energycalculator.cpp.o -MF CMakeFiles/Calc.dir/energycalculator.cpp.o.d -o CMakeFiles/Calc.dir/energycalculator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/dcdformat.cpp.o -MF CMakeFiles/IO.dir/dcdformat.cpp.o.d -o CMakeFiles/IO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/dcdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 9%] Building CXX object avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cmlformat.cpp.o -MF CMakeFiles/IO.dir/cmlformat.cpp.o.d -o CMakeFiles/IO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/energymanager.cpp.o -MF CMakeFiles/Calc.dir/energymanager.cpp.o.d -o CMakeFiles/Calc.dir/energymanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/Rendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/g++ -DCalc_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/Calc.dir/lennardjones.cpp.o -MF CMakeFiles/Calc.dir/lennardjones.cpp.o.d -o CMakeFiles/Calc.dir/lennardjones.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h: In constructor ‘Avogadro::Calc::LennardJones::LennardJones()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56:7: warning: ‘Avogadro::Calc::LennardJones::m_exponent’ will be initialized after [-Wreorder] 56 | int m_exponent; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Core::UnitCell* Avogadro::Calc::LennardJones::m_cell’ [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52:19: warning: ‘Avogadro::Calc::LennardJones::m_cell’ will be initialized after [-Wreorder] 52 | Core::UnitCell* m_cell; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51:19: warning: ‘Avogadro::Core::Molecule* Avogadro::Calc::LennardJones::m_molecule’ [-Wreorder] 51 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:14:1: warning: when initialized here [-Wreorder] 14 | LennardJones::LennardJones() | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::setMolecule(Avogadro::Core::Molecule*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:46:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 46 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:55:29: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 55 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual Avogadro::Real Avogadro::Calc::LennardJones::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:84:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 84 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:86:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 86 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 98 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:100:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp: In member function ‘virtual void Avogadro::Calc::LennardJones::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:128:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 128 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:130:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 130 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:154:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 154 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.cpp:156:31: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 156 | for (Index j = i + 1; j < numAtoms; ++j) { | ~~^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/beziergeometry.cpp.o -MF CMakeFiles/Rendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mdlformat.cpp.o -MF CMakeFiles/IO.dir/mdlformat.cpp.o.d -o CMakeFiles/IO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/gromacsformat.cpp.o -MF CMakeFiles/IO.dir/gromacsformat.cpp.o.d -o CMakeFiles/IO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/gromacsformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bufferobject.cpp.o -MF CMakeFiles/Rendering.dir/bufferobject.cpp.o.d -o CMakeFiles/Rendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/Calc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.99.0 CMakeFiles/Calc.dir/chargemodel.cpp.o CMakeFiles/Calc.dir/chargemanager.cpp.o CMakeFiles/Calc.dir/defaultmodel.cpp.o CMakeFiles/Calc.dir/energycalculator.cpp.o CMakeFiles/Calc.dir/energymanager.cpp.o CMakeFiles/Calc.dir/lennardjones.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.99.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Built target Calc make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Building CXX object avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/vaspformat.cpp.o -MF CMakeFiles/IO.dir/vaspformat.cpp.o.d -o CMakeFiles/IO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/pdbformat.cpp.o -MF CMakeFiles/IO.dir/pdbformat.cpp.o.d -o CMakeFiles/IO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/Rendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert1].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: ‘vert1’ declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&vert2].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp: In member function ‘Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: ‘vert2’ declared here 48 | ColorNormalVertex vert2; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/trrformat.cpp.o -MF CMakeFiles/IO.dir/trrformat.cpp.o.d -o CMakeFiles/IO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/trrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/IO.dir/hdf5dataformat.cpp.o.d -o 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/cjsonformat.cpp.o -MF CMakeFiles/IO.dir/cjsonformat.cpp.o.d -o CMakeFiles/IO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp: In function ‘json Avogadro::Io::eigenColToJson(const Avogadro::MatrixX&, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.cpp:87:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::Index’ {aka ‘long int’} [-Wsign-compare] 87 | for (Index i = 0; i < matrix.rows(); ++i) { | ~~^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Building CXX object avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/xyzformat.cpp.o -MF CMakeFiles/IO.dir/xyzformat.cpp.o.d -o CMakeFiles/IO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/camera.cpp.o -MF CMakeFiles/Rendering.dir/camera.cpp.o.d -o CMakeFiles/Rendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/lammpsformat.cpp.o -MF CMakeFiles/IO.dir/lammpsformat.cpp.o.d -o CMakeFiles/IO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp: In member function ‘Avogadro::Io::LammpsTrajectoryFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:268:5: warning: ‘numAtoms2’ may be used uninitialized [-Wmaybe-uninitialized] 268 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.cpp:231:10: note: ‘numAtoms2’ was declared here 231 | size_t numAtoms2; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/drawable.cpp.o -MF CMakeFiles/Rendering.dir/drawable.cpp.o.d -o CMakeFiles/Rendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/turbomoleformat.cpp.o -MF CMakeFiles/IO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/IO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/groupnode.cpp.o -MF CMakeFiles/Rendering.dir/groupnode.cpp.o.d -o CMakeFiles/Rendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometrynode.cpp.o -MF CMakeFiles/Rendering.dir/geometrynode.cpp.o.d -o CMakeFiles/Rendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/curvegeometry.cpp.o -MF CMakeFiles/Rendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:6: In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:63:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert1].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:59:23: note: ‘vert1’ declared here 59 | ColorNormalVertex vert1; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ In member function ‘Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)’, inlined from ‘std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:69:21: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:67:8: warning: ‘MEM[(const struct ColorNormalVertex &)&vert2].padding’ may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:65:23: note: ‘vert2’ declared here 65 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:12: In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 4]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 4]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ In member function ‘Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const’, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from ‘Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from ‘Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from ‘Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from ‘Avogadro::Rendering::CurveGeometry::update(int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:97:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: ‘MEM[(float &)&previous + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp: In member function ‘Avogadro::Rendering::CurveGeometry::update(int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.cpp:87:12: note: ‘MEM[(float &)&previous + 8]’ was declared here 87 | Vector3f previous; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/Rendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/Rendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/node.cpp.o -MF CMakeFiles/Rendering.dir/node.cpp.o.d -o CMakeFiles/Rendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/Rendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/glrenderer.cpp.o -MF CMakeFiles/Rendering.dir/glrenderer.cpp.o.d -o CMakeFiles/Rendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/Rendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quad.cpp.o -MF CMakeFiles/Rendering.dir/quad.cpp.o.d -o CMakeFiles/Rendering.dir/quad.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.207074].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp: In member function ‘Avogadro::Rendering::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.cpp:20:26: note: ‘’ declared here 20 | Array verts(4); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/plyvisitor.cpp.o -MF CMakeFiles/Rendering.dir/plyvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/plyvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 17%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/meshgeometry.cpp.o -MF CMakeFiles/Rendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/Rendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/quadoutline.cpp.o -MF CMakeFiles/Rendering.dir/quadoutline.cpp.o.d -o CMakeFiles/Rendering.dir/quadoutline.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.205759].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp: In member function ‘Avogadro::Rendering::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.cpp:16:26: note: ‘’ declared here 16 | Array verts(5); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shader.cpp.o -MF CMakeFiles/Rendering.dir/shader.cpp.o.d -o CMakeFiles/Rendering.dir/shader.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/scene.cpp.o -MF CMakeFiles/Rendering.dir/scene.cpp.o.d -o CMakeFiles/Rendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 16%] Building CXX object avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DH5_USE_110_API -DIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/struct -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/pugixml -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/IO.dir/mmtfformat.cpp.o -MF CMakeFiles/IO.dir/mmtfformat.cpp.o.d -o CMakeFiles/IO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mmtfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 18%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/Rendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/solidpipeline.cpp.o -MF CMakeFiles/Rendering.dir/solidpipeline.cpp.o.d -o CMakeFiles/Rendering.dir/solidpipeline.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security 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avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/shaderprogram.cpp.o -MF CMakeFiles/Rendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/Rendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabel3d.cpp.o -MF CMakeFiles/Rendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/Rendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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avogadro/rendering/CMakeFiles/Rendering.dir/textproperties.cpp.o -MF CMakeFiles/Rendering.dir/textproperties.cpp.o.d -o CMakeFiles/Rendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/visitor.cpp.o -MF CMakeFiles/Rendering.dir/visitor.cpp.o.d -o CMakeFiles/Rendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/texture2d.cpp.o -MF CMakeFiles/Rendering.dir/texture2d.cpp.o.d -o CMakeFiles/Rendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/textlabelbase.cpp.o -MF CMakeFiles/Rendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/Rendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 20%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/volumegeometry.cpp.o -MF CMakeFiles/Rendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/Rendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/g++ -DRendering_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 19%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/IO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.99.0 CMakeFiles/IO.dir/cjsonformat.cpp.o CMakeFiles/IO.dir/cmlformat.cpp.o CMakeFiles/IO.dir/cmsgpackformat.cpp.o CMakeFiles/IO.dir/dcdformat.cpp.o CMakeFiles/IO.dir/fileformat.cpp.o CMakeFiles/IO.dir/fileformatmanager.cpp.o CMakeFiles/IO.dir/gromacsformat.cpp.o CMakeFiles/IO.dir/mdlformat.cpp.o CMakeFiles/IO.dir/vaspformat.cpp.o CMakeFiles/IO.dir/pdbformat.cpp.o CMakeFiles/IO.dir/xyzformat.cpp.o CMakeFiles/IO.dir/trrformat.cpp.o CMakeFiles/IO.dir/turbomoleformat.cpp.o CMakeFiles/IO.dir/lammpsformat.cpp.o CMakeFiles/IO.dir/hdf5dataformat.cpp.o CMakeFiles/IO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: /usr/lib64/libhdf5.so ../../lib/libAvogadroCore.so.1.99.0 ../../thirdparty/libstruct.a ../../thirdparty/libpugixml.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Built target IO make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio/CMakeFiles/QuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/build /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/Rendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.99.0 CMakeFiles/Rendering.dir/arcsector.cpp.o CMakeFiles/Rendering.dir/arcstrip.cpp.o CMakeFiles/Rendering.dir/arrowgeometry.cpp.o CMakeFiles/Rendering.dir/beziergeometry.cpp.o CMakeFiles/Rendering.dir/bufferobject.cpp.o CMakeFiles/Rendering.dir/bsplinegeometry.cpp.o CMakeFiles/Rendering.dir/cartoongeometry.cpp.o CMakeFiles/Rendering.dir/camera.cpp.o CMakeFiles/Rendering.dir/curvegeometry.cpp.o CMakeFiles/Rendering.dir/cylindergeometry.cpp.o CMakeFiles/Rendering.dir/dashedlinegeometry.cpp.o CMakeFiles/Rendering.dir/drawable.cpp.o CMakeFiles/Rendering.dir/geometrynode.cpp.o CMakeFiles/Rendering.dir/geometryvisitor.cpp.o CMakeFiles/Rendering.dir/groupnode.cpp.o CMakeFiles/Rendering.dir/glrenderer.cpp.o CMakeFiles/Rendering.dir/glrendervisitor.cpp.o CMakeFiles/Rendering.dir/linestripgeometry.cpp.o CMakeFiles/Rendering.dir/meshgeometry.cpp.o CMakeFiles/Rendering.dir/node.cpp.o CMakeFiles/Rendering.dir/plyvisitor.cpp.o CMakeFiles/Rendering.dir/povrayvisitor.cpp.o CMakeFiles/Rendering.dir/quad.cpp.o CMakeFiles/Rendering.dir/quadoutline.cpp.o CMakeFiles/Rendering.dir/scene.cpp.o CMakeFiles/Rendering.dir/shader.cpp.o CMakeFiles/Rendering.dir/shaderprogram.cpp.o CMakeFiles/Rendering.dir/solidpipeline.cpp.o CMakeFiles/Rendering.dir/spheregeometry.cpp.o CMakeFiles/Rendering.dir/textlabel2d.cpp.o CMakeFiles/Rendering.dir/textlabel3d.cpp.o CMakeFiles/Rendering.dir/textlabelbase.cpp.o CMakeFiles/Rendering.dir/textproperties.cpp.o CMakeFiles/Rendering.dir/textrenderstrategy.cpp.o CMakeFiles/Rendering.dir/texture2d.cpp.o CMakeFiles/Rendering.dir/transformnode.cpp.o CMakeFiles/Rendering.dir/visitor.cpp.o CMakeFiles/Rendering.dir/volumegeometry.cpp.o CMakeFiles/Rendering.dir/vrmlvisitor.cpp.o CMakeFiles/Rendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroCore.so.1.99.0 /usr/lib64/libGLEW.so /usr/lib64/libGLX.so /usr/lib64/libOpenGL.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Built target Rendering make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/genericoutput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -o ../../bin/avocjsontocml -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 22%] Built target avocjsontocml make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 22%] Built target QtGui_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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object avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o -MF CMakeFiles/avobabel.dir/avobabel.cpp.o.d -o CMakeFiles/avobabel.dir/avobabel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command/avobabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp: In member function ‘void Avogadro::QuantumIO::GaussianFchk::processLine(std::istream&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:194:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 194 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:211:23: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 211 | if (tmpVec.size() == m_numAtoms * 3 * m_normalModes) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:212:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 212 | for (unsigned int i = 0; i < m_normalModes; ++i) { | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.cpp:214:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for (unsigned int j = 0; j < m_numAtoms; ++j) { | ~~^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Built target avobabel make[1]: Leaving directory 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'/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Automatic MOC for target QtGui cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/build/avogadro/qtgui/avogadroqtguiexport.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/insertfragmentdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sortfiltertreeproxymodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/QtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtgui/QtGui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Built target QtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/qtgui.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/molden.cpp.o -MF CMakeFiles/QuantumIO.dir/molden.cpp.o.d -o CMakeFiles/QuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/backgroundfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/QuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/colorbutton.cpp.o -MF CMakeFiles/QtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/QtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/containerwidget.cpp.o -MF CMakeFiles/QtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/QtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementdetail_p.cpp.o cd 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-DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/QtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/QtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/QtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/QtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/QtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/QtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:8: In member function ‘Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const’, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from ‘Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from ‘Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from ‘Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from ‘Eigen::DenseBase >::operator*=(double const&)’ at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: ‘MEM [(struct DenseStorage *)&position + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp: In member function ‘Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: ‘MEM [(struct DenseStorage *)&position + 16B]’ was declared here 133 | Vector3 position; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/QtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/QtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/g++ -DQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/QuantumIO.dir/orca.cpp.o -MF CMakeFiles/QuantumIO.dir/orca.cpp.o.d -o CMakeFiles/QuantumIO.dir/orca.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp: In member function ‘void Avogadro::QuantumIO::ORCAOutput::processLine(std::istream&, Avogadro::Core::GaussianSet*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:653:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:656:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 656 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:662:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 662 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:732:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | while (idx < orcaOrbitals.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:735:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 735 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:741:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 741 | if (idx + 1 >= columns[i].size()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:118:9: warning: variable ‘vibScaling’ set but not used [-Wunused-but-set-variable] 118 | float vibScaling = 1.0f; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:400:39: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 400 | m_vibDisplacements[i].resize(m_atomNums.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174:8: note: by argument 3 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)’ declared here 174 | void resize(const size_t& sz, const ValueType& t = ValueType()) | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:400:39: note: ‘’ declared here 400 | m_vibDisplacements[i].resize(m_atomNums.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:402:44: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 402 | m_vibDisplacements[i].push_back(Eigen::Vector3d()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247:8: note: by argument 2 of type ‘const struct ValueType &’ to ‘Avogadro::Core::Array >::push_back(Eigen::Matrix const&)’ declared here 247 | void push_back(const ValueType& v) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.cpp:402:61: note: ‘’ declared here 402 | m_vibDisplacements[i].push_back(Eigen::Vector3d()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/QtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/QtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/QtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o cd 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-isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/layermodel.cpp.o -MF CMakeFiles/QtGui.dir/layermodel.cpp.o.d -o CMakeFiles/QtGui.dir/layermodel.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/interfacescript.cpp.o -MF CMakeFiles/QtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/QtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/QtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/QtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/QtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/QtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h: In constructor ‘Avogadro::QtGui::JsonWidget::JsonWidget(QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136:12: warning: ‘Avogadro::QtGui::JsonWidget::m_centralWidget’ will be initialized after [-Wreorder] 136 | QWidget* m_centralWidget; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133:8: warning: ‘bool Avogadro::QtGui::JsonWidget::m_empty’ [-Wreorder] 133 | bool m_empty; | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.cpp:33:1: warning: when initialized here [-Wreorder] 33 | JsonWidget::JsonWidget(QWidget* parent_) | ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/QtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/QtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/periodictableview.cpp.o -MF CMakeFiles/QtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/QtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/molecule.cpp.o -MF CMakeFiles/QtGui.dir/molecule.cpp.o.d -o CMakeFiles/QtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/QtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/QtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/pythonscript.cpp.o -MF CMakeFiles/QtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/QtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/QtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/QtGui.dir/sceneplugin.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/scriptloader.cpp.o -MF CMakeFiles/QtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/QtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/utilities.cpp.o -MF CMakeFiles/QtGui.dir/utilities.cpp.o.d -o CMakeFiles/QtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/viewfactory.cpp.o -MF CMakeFiles/QtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/QtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 26%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.99.0 CMakeFiles/QuantumIO.dir/gamessus.cpp.o CMakeFiles/QuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/QuantumIO.dir/gaussiancube.cpp.o CMakeFiles/QuantumIO.dir/genericoutput.cpp.o CMakeFiles/QuantumIO.dir/molden.cpp.o CMakeFiles/QuantumIO.dir/mopacaux.cpp.o CMakeFiles/QuantumIO.dir/nwchemjson.cpp.o CMakeFiles/QuantumIO.dir/nwchemlog.cpp.o CMakeFiles/QuantumIO.dir/orca.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 29%] Built target QuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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-Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib ../../lib/libAvogadroQuantumIO.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtGui_EXPORTS -DUSE_SPGLIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/QtGui_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/QtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/QtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/QtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.99.0 CMakeFiles/QtGui.dir/QtGui_autogen/mocs_compilation.cpp.o CMakeFiles/QtGui.dir/backgroundfileformat.cpp.o CMakeFiles/QtGui.dir/colorbutton.cpp.o CMakeFiles/QtGui.dir/containerwidget.cpp.o CMakeFiles/QtGui.dir/customelementdialog.cpp.o CMakeFiles/QtGui.dir/elementdetail_p.cpp.o CMakeFiles/QtGui.dir/elementitem_p.cpp.o CMakeFiles/QtGui.dir/elementtranslator.cpp.o CMakeFiles/QtGui.dir/extensionplugin.cpp.o CMakeFiles/QtGui.dir/filebrowsewidget.cpp.o CMakeFiles/QtGui.dir/fileformatdialog.cpp.o CMakeFiles/QtGui.dir/generichighlighter.cpp.o CMakeFiles/QtGui.dir/hydrogentools.cpp.o CMakeFiles/QtGui.dir/insertfragmentdialog.cpp.o CMakeFiles/QtGui.dir/interfacescript.cpp.o CMakeFiles/QtGui.dir/interfacewidget.cpp.o CMakeFiles/QtGui.dir/jsonwidget.cpp.o CMakeFiles/QtGui.dir/layermodel.cpp.o CMakeFiles/QtGui.dir/rwlayermanager.cpp.o CMakeFiles/QtGui.dir/meshgenerator.cpp.o CMakeFiles/QtGui.dir/molecule.cpp.o CMakeFiles/QtGui.dir/moleculemodel.cpp.o CMakeFiles/QtGui.dir/multiviewwidget.cpp.o CMakeFiles/QtGui.dir/periodictablescene_p.cpp.o CMakeFiles/QtGui.dir/periodictableview.cpp.o CMakeFiles/QtGui.dir/pluginlayermanager.cpp.o CMakeFiles/QtGui.dir/pythonscript.cpp.o CMakeFiles/QtGui.dir/rwmolecule.cpp.o CMakeFiles/QtGui.dir/sceneplugin.cpp.o CMakeFiles/QtGui.dir/scenepluginmodel.cpp.o CMakeFiles/QtGui.dir/scriptloader.cpp.o CMakeFiles/QtGui.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/QtGui.dir/toolplugin.cpp.o CMakeFiles/QtGui.dir/utilities.cpp.o CMakeFiles/QtGui.dir/viewfactory.cpp.o CMakeFiles/QtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QtGui make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target MoleQueue_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QtOpenGL_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QTAIMScenePlugin_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ThreeDMol_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ApplyColors_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Bonding_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ConfigurePython_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target CopyPaste_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Cartoons_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Centroid_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Crystal_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target CrystalScene_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target CustomElements_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Hydrogens_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ImportPQR_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target FetchPDB_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target NucleicInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Label_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target LammpsInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target LineFormatInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target NetworkDatabases_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target OpenBabel_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target OpenMMInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target PLY_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target PropertyTables_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target POVRay_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Select_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target SpaceGroup_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Vibrations_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target VRML_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target CoordinateEditor_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target InsertFragment_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target MolecularProperties_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target commands_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/depend /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Forcefield_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ScriptCharges_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target ScriptFileFormats_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target BallStick_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target CloseContacts_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target PluginDownloader_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Force_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Licorice_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build'. /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build'. make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build'. make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Meshes_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target NonCovalent_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target VanDerWaals_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target Wireframe_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QTAIMExtension_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target ApplyColors_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 31%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 31%] Automatic MOC for target MoleQueue cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/build/avogadro/molequeue/avogadromolequeueexport.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib64/qt5/bin/moc -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/MoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/molequeue/MoleQueue_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target MoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Automatic MOC for target QtOpenGL cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtopengl/avogadroqtopenglexport.h" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtopengl/QtOpenGL_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target QtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target Centroid cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/centroid/centroid.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/centroid/centroid.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/include/CentroidPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/EWIEGA46WW/moc_centroid.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/centroid/Centroid_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target Centroid_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target Cartoons_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target ConfigurePython cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepython.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/condadialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/condadialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepythondialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/configurepython/configurepython.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepython.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_condadialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepython.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/EWIEGA46WW/moc_configurepythondialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include/ConfigurePythonPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target ConfigurePython_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target FetchPDB_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 34%] Built target ImportPQR_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target NucleicInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 34%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 33%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target LammpsInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 33%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/label/Label_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target Label_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Automatic MOC for target PLY cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/ply/ply.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ply/PLYPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLYPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ply/ply.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/EWIEGA46WW/moc_ply.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/include/PLYPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/ply/PLY_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target PLY_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target OpenMMInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target VRML_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target PropertyTables_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/conformersearchdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_conformersearchdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/SelectPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/select/Select_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target Vibrations cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrations.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vibrations/vibrationmodel.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vibrations/vibrations.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrations.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include/VibrationsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/vibrations/Vibrations_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Select_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Vibrations_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target InsertFragment_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target ScriptCharges_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target commands_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Automatic MOC for target Forcefield cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefield.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/obmmenergy.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/forcefield/scriptenergy.h" AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" includes the moc file "obenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc warning --------------- "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" includes the moc file "obmmenergy.moc", but does not contain a Q_OBJECT, Q_GADGET, Q_NAMESPACE or Q_NAMESPACE_EXPORT macro. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obenergy.cpp" /usr/lib64/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/obmmenergy.cpp" /usr/lib64/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefielddialog.h" /usr/lib64/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp" /usr/lib64/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/forcefield/forcefield.h" /usr/lib64/qt5/bin/moc -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/openbabel3 -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefielddialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/EWIEGA46WW/moc_forcefield.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/ForcefieldPlugin.moc.d" AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obmmenergy.moc.d" AutoMoc: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:0: Note: No relevant classes found. No output generated. AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include/obenergy.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/forcefield/Forcefield_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Forcefield_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target PluginDownloader_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/force/Force_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Force_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target CloseContacts_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimextension.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target NonCovalent_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/chargedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd 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Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/MoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/MoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/activeobjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/QtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors/applycolors.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Built target ApplyColors make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bondingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/client.cpp.o -MF CMakeFiles/MoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratorwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Building CXX object avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtOpenGL_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/QtOpenGL_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/qttextrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/g++ -DMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/MoleQueue_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtOpenGL.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.99.0 CMakeFiles/QtOpenGL.dir/QtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/QtOpenGL.dir/activeobjects.cpp.o CMakeFiles/QtOpenGL.dir/glwidget.cpp.o CMakeFiles/QtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.99.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Built target QtOpenGL make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Generating ui_configurepythondialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ui_configurepythondialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Generating ui_condadialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ui_condadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -MF CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o.d -o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CentroidPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Built target Bonding make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 45%] Building CXX object avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/Centroid_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/centroid.cpp.o -MF CMakeFiles/Centroid.dir/centroid.cpp.o.d -o CMakeFiles/Centroid.dir/centroid.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid/centroid.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Centroid.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/cmake -P CMakeFiles/Centroid.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid && /usr/bin/cmake -E cmake_link_script CMakeFiles/Centroid.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Centroid.a CMakeFiles/Centroid.dir/Centroid_autogen/mocs_compilation.cpp.o CMakeFiles/Centroid.dir/centroid.cpp.o CMakeFiles/Centroid.dir/CentroidPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Centroid.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Built target Centroid make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/condadialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/condadialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/MoleQueue.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.99.0 CMakeFiles/MoleQueue.dir/MoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/MoleQueue.dir/batchjob.cpp.o CMakeFiles/MoleQueue.dir/inputgenerator.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/MoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/MoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/MoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/MoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/MoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/MoleQueue.dir/client/client.cpp.o CMakeFiles/MoleQueue.dir/client/jobobject.cpp.o CMakeFiles/MoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Network.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.99.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Built target MoleQueue make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons/cartoons.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target Cartoons make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build 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/usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepython.cpp.o -MF CMakeFiles/ConfigurePython.dir/configurepython.cpp.o.d -o CMakeFiles/ConfigurePython.dir/configurepython.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -MF CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o.d -o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePythonPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Building CXX object avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/ConfigurePython_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -MF CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o.d -o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython/configurepythondialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ConfigurePython.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/cmake -P CMakeFiles/ConfigurePython.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConfigurePython.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ConfigurePython.a CMakeFiles/ConfigurePython.dir/ConfigurePython_autogen/mocs_compilation.cpp.o CMakeFiles/ConfigurePython.dir/condadialog.cpp.o CMakeFiles/ConfigurePython.dir/configurepython.cpp.o CMakeFiles/ConfigurePython.dir/configurepythondialog.cpp.o CMakeFiles/ConfigurePython.dir/ConfigurePythonPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ConfigurePython.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target ConfigurePython make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste/copypaste.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P 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avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target Editor_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/crystalscene.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 49%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 49%] Built target CrystalScene make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -MF CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Built target Focus_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements/customelements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Generating ui_pqrwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Built target CustomElements make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o cd 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal/unitcelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 54%] Built target Crystal make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 54%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdnadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 53%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target FetchPDB make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/importpqr.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens/hydrogens.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 54%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target LabelEditor_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target Hydrogens make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr/pqrrequest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target ImportPQR make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target Manipulator_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp: In member function ‘void Avogadro::QtPlugins::LayerLabel::setupWidget(Avogadro::QtPlugins::Label*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/label.cpp:155:12: warning: unused variable ‘val’ [-Wunused-variable] 155 | char val = LabelOptions::None; | ^~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target Label make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target MeasureTool_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target Navigator_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target LineFormatInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna/insertdna.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target NucleicInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Generating ui_conformersearchdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Generating ui_openmminputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target LammpsInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target PlayerTool_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd 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directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -MF CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/conformersearchdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/ply.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/ply.cpp.o -MF CMakeFiles/PLY.dir/ply.cpp.o.d -o CMakeFiles/PLY.dir/ply.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply/ply.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 58%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target OpenMMInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLY_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ply/CMakeFiles/PLY.dir/PLYPlugin.cpp.o -MF CMakeFiles/PLY.dir/PLYPlugin.cpp.o.d -o CMakeFiles/PLY.dir/PLYPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/PLYPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PLY.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/cmake -P CMakeFiles/PLY.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply && /usr/bin/cmake -E cmake_link_script CMakeFiles/PLY.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PLY.a CMakeFiles/PLY.dir/PLY_autogen/mocs_compilation.cpp.o CMakeFiles/PLY.dir/ply.cpp.o CMakeFiles/PLY.dir/PLYPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PLY.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Built target PLY make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Built target ResetView_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor ‘Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: ‘Avogadro::QtPlugins::OBCharges::m_identifier’ will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base ‘Avogadro::Calc::ChargeModel’ [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray/povray.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Built target POVRay make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 61%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obprocess.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 61%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertytables.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/SelectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target Selection_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/obfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target Select make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target Surfaces_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target TemplateTool_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/ui_vibrationdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor ‘Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:39:20: warning: ‘Avogadro::PropertyView::m_molecule’ will be initialized after [-Wreorder] 39 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.h:38:16: warning: ‘Avogadro::PropertyType Avogadro::PropertyView::m_type’ [-Wreorder] 38 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:37:1: warning: when initialized here [-Wreorder] 37 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function ‘virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 112 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertyview.cpp:117:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Avogadro::Index’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables/propertymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target PropertyTables make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup/spacegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target apbs_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 64%] Built target SpaceGroup make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 64%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -MF CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Built target Cp2kInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 65%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -MF CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o.d -o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/VibrationsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel/openbabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/conformersearchdialog.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Built target OpenBabel make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 64%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml/vrml.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Generating ui_forcefielddialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/ui_forcefielddialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target VRML make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target GamessInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/Vibrations_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/vibrations.cpp.o -MF CMakeFiles/Vibrations.dir/vibrations.cpp.o.d -o CMakeFiles/Vibrations.dir/vibrations.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations/vibrations.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Vibrations.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/cmake -P CMakeFiles/Vibrations.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations && /usr/bin/cmake -E cmake_link_script CMakeFiles/Vibrations.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Vibrations.a CMakeFiles/Vibrations.dir/Vibrations_autogen/mocs_compilation.cpp.o CMakeFiles/Vibrations.dir/vibrationdialog.cpp.o CMakeFiles/Vibrations.dir/vibrationmodel.cpp.o CMakeFiles/Vibrations.dir/vibrations.cpp.o CMakeFiles/Vibrations.dir/VibrationsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Vibrations.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target Vibrations make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -MF CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘void Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:413:15: warning: unused variable ‘index’ [-Wunused-variable] 413 | int index = tokenCursor.selectedText().toInt(&isInt); | ^~~~~ In member function ‘__ct ’, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from ‘QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)’ at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:509:28: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: ‘atom.atomicNumber’ may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function ‘Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: ‘atom.atomicNumber’ was declared here 341 | AtomStruct atom; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target CoordinateEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target SVG_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor ‘Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:32: warning: ‘Avogadro::QtPlugins::InsertFragment::m_crystalDialog’ will be initialized after [-Wreorder] 50 | QtGui::InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog’ [-Wreorder] 49 | QtGui::InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: ‘Avogadro::QtPlugins::InsertFragment::m_reader’ will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: ‘Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule’ [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obmmenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h: In constructor ‘Avogadro::QtPlugins::OBMMEnergy::OBMMEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:82:15: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_name’ will be initialized after [-Wreorder] 82 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘QProcess* Avogadro::QtPlugins::OBMMEnergy::m_process’ [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:77:13: warning: ‘Avogadro::QtPlugins::OBMMEnergy::m_process’ will be initialized after [-Wreorder] 77 | QProcess* m_process; | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.h:75:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBMMEnergy::m_molecule’ [-Wreorder] 75 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:20:1: warning: when initialized here [-Wreorder] 20 | OBMMEnergy::OBMMEnergy(const std::string& method) | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::OBMMEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:225:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 225 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBMMEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obmmenergy.cpp:258:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 258 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target InsertFragment make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target QuantumInput_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 70%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Built target MolecularProperties make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -MF CMakeFiles/Forcefield.dir/scriptenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h: In constructor ‘Avogadro::QtPlugins::ScriptEnergy::ScriptEnergy(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:91:8: warning: ‘Avogadro::QtPlugins::ScriptEnergy::m_valid’ will be initialized after [-Wreorder] 91 | bool m_valid; | ^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.h:86:10: warning: ‘Avogadro::QtPlugins::ScriptEnergy::Format Avogadro::QtPlugins::ScriptEnergy::m_inputFormat’ [-Wreorder] 86 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:29:1: warning: when initialized here [-Wreorder] 29 | ScriptEnergy::ScriptEnergy(const QString& scriptFileName_) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual Avogadro::Real Avogadro::QtPlugins::ScriptEnergy::value(const Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:116:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 116 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::ScriptEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/scriptenergy.cpp:149:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase >::Index’ {aka ‘long int’} [-Wsign-compare] 149 | for (Index i = 0; i < x.size(); i += 3) { | ~~^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -MF CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o.d -o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/ForcefieldPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Generating ui_downloaderwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts/command.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/commands.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/commands.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target commands make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/forcefield.cpp.o -MF CMakeFiles/Forcefield.dir/forcefield.cpp.o.d -o CMakeFiles/Forcefield.dir/forcefield.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::optimize()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:257:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 257 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:310:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 310 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:308:12: warning: variable ‘isFinite’ set but not used [-Wunused-but-set-variable] 308 | bool isFinite = true; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::forces()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:384:25: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 384 | for (Index i = 0; i < 3 * n; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:404:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 404 | for (size_t i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::freezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:455:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp: In member function ‘void Avogadro::QtPlugins::Forcefield::unfreezeSelected()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:469:23: warning: comparison of integer expressions of different signedness: ‘Avogadro::Index’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 469 | for (Index i = 0; i < numAtoms; ++i) { | ~~^~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/forcefield.cpp:26: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/avogadropython.h: At global scope: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Building CXX object avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/g++ -DBUILD_GPL_PLUGINS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/Forcefield_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/../prefix/include/openbabel3 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/openbabel3 -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/obenergy.cpp.o -MF CMakeFiles/Forcefield.dir/obenergy.cpp.o.d -o CMakeFiles/Forcefield.dir/obenergy.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:7: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h: In constructor ‘Avogadro::QtPlugins::OBEnergy::OBEnergy(const std::string&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:59:15: warning: ‘Avogadro::QtPlugins::OBEnergy::m_name’ will be initialized after [-Wreorder] 59 | std::string m_name; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.h:54:19: warning: ‘Avogadro::Core::Molecule* Avogadro::QtPlugins::OBEnergy::m_molecule’ [-Wreorder] 54 | Core::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:43:1: warning: when initialized here [-Wreorder] 43 | OBEnergy::OBEnergy(const std::string& method) | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp: In member function ‘virtual void Avogadro::QtPlugins::OBEnergy::gradient(const Eigen::VectorXd&, Eigen::VectorXd&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield/obenergy.cpp:183:12: warning: unused variable ‘energy’ [-Wunused-variable] 183 | double energy = d->m_forceField->Energy(true); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Forcefield.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -P CMakeFiles/Forcefield.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield && /usr/bin/cmake -E cmake_link_script CMakeFiles/Forcefield.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Forcefield.a CMakeFiles/Forcefield.dir/Forcefield_autogen/mocs_compilation.cpp.o CMakeFiles/Forcefield.dir/forcefield.cpp.o CMakeFiles/Forcefield.dir/forcefielddialog.cpp.o CMakeFiles/Forcefield.dir/obmmenergy.cpp.o CMakeFiles/Forcefield.dir/scriptenergy.cpp.o CMakeFiles/Forcefield.dir/obenergy.cpp.o CMakeFiles/Forcefield.dir/ForcefieldPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Forcefield.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target Forcefield make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor ‘Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics’ will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: ‘Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat’ [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function ‘virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target ScriptFileFormats make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target ScriptCharges make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function ‘QList Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable ‘itrCount’ [-Wunused-variable] 110 | long itrCount = 0; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/ForcePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick/ballandstick.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts/closecontacts.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 73%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target CloseContacts make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 73%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 73%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target BallStick make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target Force make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 73%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target PluginDownloader make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice/licorice.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target Licorice make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target OverlayAxes_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.396760].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp: In member function ‘Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes/meshes.cpp:86:53: note: ‘’ declared here 86 | Core::Array colorsRGB(colors.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target Meshes make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 75%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 76%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target VanDerWaals make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target AlignTool_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target BondCentric_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target Focus_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target LabelEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent/noncovalent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target NonCovalent make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target Manipulator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target MeasureTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe/wireframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target Navigator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target Wireframe make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/qt5/QtConcurrent -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target Surfaces_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target Selection_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target ResetView_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Automatic MOC for target TemplateTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/templatetool/templatetool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include/TemplateToolPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/EWIEGA46WW/moc_templatetool.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target TemplateTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target Cp2kInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target apbs_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 267 | yp[2] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: ‘abserr’ may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: ‘abserr’ was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: ‘n_step’ may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: ‘t_stop’ may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: ‘t_stop’ was declared here 61 | qreal t_stop; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function ‘Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: ‘MEM[(double &)&gradient + 16]’ may be used uninitialized [-Wmaybe-uninitialized] 242 | ydot[3] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: ‘MEM[(double &)&gradient + 16]’ was declared here 171 | Matrix gradient; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target GamessInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target SVG_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target QuantumInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Automatic MOC for target AlignTool cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/aligntool/aligntool.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/aligntool/aligntool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/EWIEGA46WW/moc_aligntool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include/AlignToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/aligntool/AlignTool_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target AlignTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editortoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor/editor.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target BondCentric_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 83%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core 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/usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c 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'/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 83%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Generating ui_manipulatewidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/ui_manipulatewidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulatewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 83%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 83%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus/focus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Built target Focus make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/qrc_label.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor 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/usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 85%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl 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avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Built target Editor make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator/manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Built target Manipulator make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Generating ui_selectiontoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator/navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Built target Navigator make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 85%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.483137].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function ‘Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool/measuretool.cpp:165:54: note: ‘’ declared here 165 | QVector positions(m_atoms.size(), Vector3()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Built target MeasureTool make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool/playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Built target PlayerTool make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Generating ui_templatetoolwidget.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/ui_templatetoolwidget.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Generating qrc_template.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/lib64/qt5/bin/rcc --name template --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/qrc_template.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/template.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp: In member function ‘void Avogadro::QtPlugins::SelectionToolWidget::setDropDown(size_t, size_t)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp:36:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 36 | if (current != m_ui->changeLayerDropDown->currentIndex()) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c 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'/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro 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-Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.h:13, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.488175].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function ‘Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:211:26: note: ‘’ declared here 211 | Array verts(4); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Built target Selection make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfacedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -MF CMakeFiles/TemplateTool.dir/qrc_template.cpp.o.d -o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/qrc_template.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h: In constructor ‘Avogadro::QtPlugins::TemplateToolWidget::TemplateToolWidget(QWidget*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:68:29: warning: ‘Avogadro::QtPlugins::TemplateToolWidget::m_elementSelector’ will be initialized after [-Wreorder] 68 | QtGui::PeriodicTableView* m_elementSelector; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.h:67:32: warning: ‘Avogadro::QtGui::InsertFragmentDialog* Avogadro::QtPlugins::TemplateToolWidget::m_fragmentDialog’ [-Wreorder] 67 | QtGui::InsertFragmentDialog* m_fragmentDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetoolwidget.cpp:48:1: warning: when initialized here [-Wreorder] 48 | TemplateToolWidget::TemplateToolWidget(QWidget* parent_) | ^~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbs.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -MF CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o.d -o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -isystem /usr/include/qt5/QtConcurrent -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/tinycolormap/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:19: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.519066].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function ‘Avogadro::QtPlugins::Surfaces::colorMeshByPotential()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces/surfaces.cpp:799:51: note: ‘’ declared here 799 | Core::Array positions(positionsf.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Surfaces make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Generating ui_cp2kinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/opendxreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs/apbsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd 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-mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview/resetview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target Cp2kInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target ResetView make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 95%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:11: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/avogadropython.h:2:20: warning: ‘Avogadro::pythonInterpreterPath’ defined but not used [-Wunused-variable] 2 | static const char *pythonInterpreterPath = "/usr/bin/python3"; | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 96%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target QuantumInput make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Generating qrc_aligntool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/lib64/qt5/bin/rcc --name aligntool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/qrc_aligntool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from ‘std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/alloc_traits.h:569:17, inlined from ‘std::vector >::_M_realloc_append(Avogadro::QtPlugins::SVG::SVGAtom const&)void’ at /usr/include/c++/14/bits/vector.tcc:634:26, inlined from ‘std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)’ at /usr/include/c++/14/bits/stl_vector.h:1294:21, inlined from ‘Avogadro::QtPlugins::SVG::getPositions()’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&atom + 24].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp: In member function ‘Avogadro::QtPlugins::SVG::getPositions()’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: ‘atom’ declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/lib64/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Building CXX object avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/TemplateTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/templatetool.cpp.o -MF CMakeFiles/TemplateTool.dir/templatetool.cpp.o.d -o CMakeFiles/TemplateTool.dir/templatetool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool/templatetool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/TemplateTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -P CMakeFiles/TemplateTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool && /usr/bin/cmake -E cmake_link_script CMakeFiles/TemplateTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/TemplateTool.a CMakeFiles/TemplateTool.dir/TemplateTool_autogen/mocs_compilation.cpp.o CMakeFiles/TemplateTool.dir/templatetool.cpp.o CMakeFiles/TemplateTool.dir/templatetoolwidget.cpp.o CMakeFiles/TemplateTool.dir/qrc_template.cpp.o CMakeFiles/TemplateTool.dir/TemplateToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/TemplateTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target TemplateTool make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd 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'/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io 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avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/g++ 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-I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -MF CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o.d -o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/AlignTool_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/aligntool.cpp.o -MF CMakeFiles/AlignTool.dir/aligntool.cpp.o.d -o CMakeFiles/AlignTool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:6: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h: In constructor ‘Avogadro::QtPlugins::AlignTool::AlignTool(QObject*)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:89:20: warning: ‘Avogadro::QtPlugins::AlignTool::m_toolWidget’ will be initialized after [-Wreorder] 89 | mutable QWidget* m_toolWidget; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:83:26: warning: ‘Avogadro::Rendering::GLRenderer* Avogadro::QtPlugins::AlignTool::m_renderer’ [-Wreorder] 83 | Rendering::GLRenderer* m_renderer; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:87:7: warning: ‘Avogadro::QtPlugins::AlignTool::m_alignType’ will be initialized after [-Wreorder] 87 | int m_alignType; | ^~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:86:7: warning: ‘int Avogadro::QtPlugins::AlignTool::m_axis’ [-Wreorder] 86 | int m_axis; | ^~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:48:1: warning: when initialized here [-Wreorder] 48 | AlignTool::AlignTool(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘void Avogadro::QtPlugins::AlignTool::alignAtomToAxis(Avogadro::Index, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:167:11: warning: variable ‘align’ set but not used [-Wunused-but-set-variable] 167 | Vector3 align = m_molecule->atom(atomIndex).position3d(); | ^~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:171:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 171 | double alpha, beta, gamma; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.h:11: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.487363].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::shiftAtomToOrigin(unsigned long)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:156:47: note: ‘’ declared here 156 | Core::Array newCoords(coords.size()); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from ‘QVector >::QVector(int, Eigen::Matrix const&)’ at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.489052].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::draw(Avogadro::Rendering::GroupNode&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:280:54: note: ‘’ declared here 280 | QVector positions(m_atoms.size(), Vector3()); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.487388].m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:169:47: note: ‘’ declared here 169 | Core::Array newCoords(coords.size()); | ^ In file included from /usr/include/eigen3/Eigen/Geometry:36, from /usr/include/eigen3/Eigen/Dense:6: In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:31: warning: ‘MEM[(const Scalar &)&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: warning: ‘MEM [(struct DenseStorage *)&axisVector + 16B]’ may be used uninitialized [-Wmaybe-uninitialized] In member function ‘Eigen::MatrixBase >::cross >(Eigen::MatrixBase > const&) constEigen::MatrixBase >::cross_product_return_type >::type’, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:189:32: /usr/include/eigen3/Eigen/src/Geometry/OrthoMethods.h:47:61: warning: ‘MEM[(const Scalar &)&axisVector + 8]’ may be used uninitialized [-Wmaybe-uninitialized] 47 | numext::conj(lhs.coeff(0) * rhs.coeff(1) - lhs.coeff(1) * rhs.coeff(0)) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h:346, from /usr/include/eigen3/Eigen/Core:22: In function ‘_mm_loadu_pd’, inlined from ‘Eigen::internal::ploadu(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/arch/SSE/PacketMath.h:746:22, inlined from ‘Eigen::internal::ploadt(Eigen::internal::unpacket_traits::type const*)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘Eigen::internal::evaluator > >::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>::packet<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:782:80, inlined from ‘Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >::packetByOuterInner<0, double __vector(2)>(long, long) constdouble __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:386:54, inlined from ‘Eigen::internal::redux_vec_unroller, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&)double __vector(2)’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:177:66, inlined from ‘Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> >, 3, 2>::run, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::internal::redux_evaluator, Eigen::Matrix const, Eigen::Matrix const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)double’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:344:115, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::redux >(Eigen::internal::scalar_sum_op const&) constdouble’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from ‘Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> >::sum() const’ at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from ‘Eigen::internal::dot_nocheck, Eigen::Matrix, false>::run(Eigen::MatrixBase > const&, Eigen::MatrixBase > const&)’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:37:51, inlined from ‘Eigen::MatrixBase >::dot >(Eigen::MatrixBase > const&) constEigen::ScalarBinaryOpTraits >::Scalar, Eigen::internal::scalar_product_op >::Scalar> >::ReturnType’ at /usr/include/eigen3/Eigen/src/Core/Dot.h:84:58, inlined from ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:186:22: /usr/lib/gcc/x86_64-redhat-linux/14/include/emmintrin.h:134:24: warning: ‘MEM[(__m128d_u * {ref-all})&axisVector]’ may be used uninitialized [-Wmaybe-uninitialized] 134 | return *(__m128d_u *)__P; | ^~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp: In member function ‘Avogadro::QtPlugins::AlignTool::alignAtomToAxis(unsigned long, int)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool/aligntool.cpp:176:11: note: ‘axisVector’ declared here 176 | Vector3 axisVector; | ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/AlignTool.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -P CMakeFiles/AlignTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/AlignTool.a CMakeFiles/AlignTool.dir/AlignTool_autogen/mocs_compilation.cpp.o CMakeFiles/AlignTool.dir/aligntool.cpp.o CMakeFiles/AlignTool.dir/qrc_aligntool.cpp.o CMakeFiles/AlignTool.dir/AlignToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/AlignTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target AlignTool make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:14, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10, from /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.473309].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: ‘’ declared here 145 | Array vertices(numVertices); | ^ In member function ‘Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)’, inlined from ‘Eigen::Matrix::Matrix(Eigen::Matrix const&)’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from ‘std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void’ at /usr/include/c++/14/bits/stl_construct.h:119:7, inlined from ‘std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:267:21, inlined from ‘std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:284:34, inlined from ‘std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:327:17, inlined from ‘std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*’ at /usr/include/c++/14/bits/stl_uninitialized.h:472:39, inlined from ‘std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)’ at /usr/include/c++/14/bits/stl_vector.h:1709:33, inlined from ‘std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)’ at /usr/include/c++/14/bits/stl_vector.h:572:27, inlined from ‘Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:46:17, inlined from ‘Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:120:9, inlined from ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’ at /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘MEM[(const struct PlainObjectBase &)&D.473311].m_storage’ is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function ‘Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)’: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: ‘’ declared here 146 | Array normals(numVertices); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target OverlayAxes make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target BondCentric make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build'. make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target QtPlugins_autogen_timestamp_deps make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Automatic MOC for target QtPlugins cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadroqtpluginsexport.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -I/usr/include/qt5 -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/eigen3 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -I/usr/include/c++/14 -I/usr/include/c++/14/x86_64-redhat-linux -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-redhat-linux/14/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/build/avogadro/qtplugins/QtPlugins_autogen/deps" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/AutogenUsed.txt" cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/cmake -E touch /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/timestamp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target QtPlugins_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Building CXX object avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQtPlugins_EXPORTS -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/QtPlugins_autogen/include -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core -I/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/eigen3 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/QtPlugins.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -Wno-deprecated-declarations -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.99.0 CMakeFiles/QtPlugins.dir/QtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/QtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/AlignTool.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/Centroid.a ../../lib/avogadro2/staticplugins/ConfigurePython.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PLY.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/TemplateTool.a ../../lib/avogadro2/staticplugins/Vibrations.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/Forcefield.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroCalc.so.1.99.0 ../../thirdparty/libgwavi/libgwavi.a /usr/lib64/libopenbabel.so /usr/lib64/libQt5Svg.so.5.15.15 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 ../../lib/libAvogadroMoleQueue.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Network.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 ../../lib/libAvogadroQuantumIO.so.1.99.0 /usr/lib64/libQt5Network.so.5.15.15 /usr/lib64/libarchive.so ../../lib/libAvogadroQtOpenGL.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 /usr/lib64/libGLX.so /usr/lib64/libOpenGL.so /usr/lib64/libGLEW.so /usr/lib64/libQt5Concurrent.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 ../../lib/libAvogadroQtGui.so.1.99.0 ../../lib/libAvogadroIO.so.1.99.0 /usr/lib64/libQt5Widgets.so.5.15.15 /usr/lib64/libQt5Gui.so.5.15.15 /usr/lib64/libQt5Core.so.5.15.15 ../../lib/libAvogadroRendering.so.1.99.0 ../../lib/libAvogadroCore.so.1.99.0 cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.99.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61: warning: type ‘Avogadro::QtPlugins::BasisOption’ violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63: note: name ‘BasisSZVGTH’ differs from name ‘BasisSTO3G’ defined in another translation unit 63 | BasisSZVGTH = 0, /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61: note: mismatching definition 61 | BasisSTO3G = 0, /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40: warning: type ‘Avogadro::QtPlugins::CalculateOption’ violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42: note: name ‘CalculateEnergy’ differs from name ‘CalculateSinglePoint’ defined in another translation unit 42 | CalculateEnergy = 0, /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39: note: mismatching definition 39 | CalculateSinglePoint = 0, make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [100%] Built target QtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' + pushd build/docs ~/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/docs ~/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 + doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1244 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1878 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.12.0 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energymanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-bu/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:84: warning: unbalanced grouping commands ild/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjonesdata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avospglib.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avospglib.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/color3f.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/color3f.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elements.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elements.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/graph.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/matrix.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mdlvalence_p.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mdlvalence_p.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mesh.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mutex.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/mutex.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99./builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:90: warning: unbalanced grouping commands 0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/sharedmutex.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/sharedmutex.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroups.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroups.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/utilities.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/utilities.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmlformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmlformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/dcdformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/dcdformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/gromacsformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/gromacsformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mdlformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mdlformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mmtfformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/mmtfformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/trrformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/trrformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/turbomoleformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/xyzformat.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/xyzformat.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/a/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands vogadro/molequeue/inputgeneratordialog.h... 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Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/avogadrogl.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/avogadrorendering.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/avogadrorendering.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quad.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/quadoutline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avo/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands gadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwi/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:24: warning: Compound Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:21: warning: Compound Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:23: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomutilities.h:20: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:23: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:88: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:36: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:22: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:671: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:678: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:27: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:15: warning: Compound Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:20: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/genericoutput.h:18: warning: Compound Avogadro::QuantumIO::GenericOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:19: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/orca.h:20: warning: Compound Avogadro::QuantumIO::ORCAOutput is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:64: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:12: warning: Compound Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:26: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:37: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:114: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:103: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:81: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:59: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:48: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:92: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:70: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:14: warning: Compound Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:26: warning: Compound Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:14: warning: Compound Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:38: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:33: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:44: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:121: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:110: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:88: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:66: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:55: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:99: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/types.h:77: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemanager.h:97: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:42: warning: Member value(const Eigen::VectorXd &x) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:43: warning: Member gradient(const Eigen::VectorXd &x, Eigen::VectorXd &grad) override (function) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:51: warning: Member m_molecule (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:52: warning: Member m_cell (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:53: warning: Member m_radii (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:54: warning: Member m_vdw (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:55: warning: Member m_depth (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:56: warning: Member m_exponent (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/lennardjones.h:58: warning: Member m_elements (variable) of class Avogadro::Calc::LennardJones is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/energycalculator.h:118: warning: Member m_mask (variable) of class Avogadro::Calc::EnergyCalculator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:21: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:21: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/avogadrocore.h:63: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:194: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:71: warning: Member valence_electrons[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:83: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:226: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/elementdata.h:267: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:37: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:39: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/angleiterator.h:45: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:865: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:872: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< Molecule > is not documented. dget.h... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound Frustrum... Generating docs for compound TypeTraits< T >... Generating docs for compound TypeTraits< char >... Generating docs for compound TypeTraits< double >... Generating docs for compound TypeTraits< float >... Generating docs for compound TypeTraits< int >... Generating docs for compound TypeTraits< short >... Generating docs for compound TypeTraits< unsigned char >... Generating docs for compound TypeTraits< unsigned int >... Generating docs for compound TypeTraits< unsigned short >... Generating docs for compound ChargeManager... Generating docs for compound ChargeModel... Generating docs for compound DefaultModel... Generating docs for compound EnergyCalculator... Generating docs for compound EnergyManager... Generating docs for compound LennardJones... Generating docs for namespace Avogadro::Core Generating docs for compound AngleIterator... Generating docs for compound Array< T >... Generating docs for compound ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Atom... Generating docs for compound AtomTemplate< Molecule_T >... Generating docs for compound AtomTyper< OutputType >... Generating docs for compound AtomUtilities... Generating docs for compound AvoSpglib... Generating docs for compound BasisSet... Generating docs for compound Bond... Generating docs for compoun/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateblockgenerator.h:83: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:40: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:124: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:227: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:228: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:230: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:231: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:239: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:240: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:241: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:242: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:243: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:244: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:245: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:33: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:37: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:39: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:43: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/dihedraliterator.h:45: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:229: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:230: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:231: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:232: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:233: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:234: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:235: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:236: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:237: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:238: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:239: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:240: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:241: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:242: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:248: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:256: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:264: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:272: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:280: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:288: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:296: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:304: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:312: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussianset.h:313: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/gaussiansettools.h:35: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:31: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:32: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:33: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:34: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layer.h:35: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:34: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:49: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:50: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:51: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:70: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:76: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:62: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:63: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:64: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:65: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:66: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:67: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:68: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:60: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:61: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:62: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:63: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:64: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:65: warning: Member m_cachedArray (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/neighborperceiver.h:66: warning: Member m_cachedIndex (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:39: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:55: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:56: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:57: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:59: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:61: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:65: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:67: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:69: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:71: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:73: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:75: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:77: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:82: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:120: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:138: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:139: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:140: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:141: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:142: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:143: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:144: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residue.h:145: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:40: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/secondarystructure.h:43: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/basisset.h:82: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/slatersettools.h:33: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:29: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:30: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:32: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/unitcell.h:89: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:31: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant.h:127: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:25: warning: Member Variant(const char *v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:31: warning: Member Variant(const MatrixXf &v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:74: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:85: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:96: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:107: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:118: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:129: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:140: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:151: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:162: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:168: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:179: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:196: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:207: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:218: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:229: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:246: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:259: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:274: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:289: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:298: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:316: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variant-inline.h:325: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:54: warning: Member deserialize(std::istream &in, Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cjsonformat.h:55: warning: Member serialize(std::ostream &out, const Core::Molecule &molecule, bool json) (function) of class Avogadro::Io::CjsonFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/cmsgpackformat.h:56: warning: Member m_json (variable) of class Avogadro::Io::CMsgPackFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:459: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:42: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:43: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:34: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:35: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:37: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/containerwidget.h:38: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:66: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:63: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:35: warning: Member refresh() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:37: warning: Member filterTextChanged(const QString &) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:39: warning: Member activated() (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:41: warning: Member currentChanged(const QModelIndex &selected, const QModelIndex &deselected) (slot) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:45: warning: Member performInsert(const QString &fileName, bool crystal) (signal) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:28: warning: Member InsertFragmentDialog(QWidget *parent=nullptr, QString directory="molecules") (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/insertfragmentdialog.h:32: warning: Member fileName() (function) of class Avogadro::QtGui::InsertFragmentDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:612: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:457: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:130: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:137: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/jsonwidget.h:138: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:31: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:68: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:40: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:55: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:56: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:57: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:58: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:59: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:61: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:63: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:64: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/layermodel.h:65: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:97: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:135: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:157: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:230: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:232: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:233: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:235: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:237: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:238: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:229: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:230: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:303: warning: Member atomLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:343: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:438: warning: Member bondLabels() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:463: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:464: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:466: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:468: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:476: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:477: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:479: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:481: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:488: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:543: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:564: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:565: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:566: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:567: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:568: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:569: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:570: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:571: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:592: warning: Member perceiveBondOrders() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:600: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:601: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:602: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:603: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:614: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:645: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:646: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:647: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:649: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:650: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:775: warning: Member frozenAtomMask() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:782: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:783: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:787: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:789: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:793: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:795: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:797: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:799: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:800: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:785: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:813: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:818: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:821: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:822: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:823: warning: Member m_atomLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:824: warning: Member m_bondLabels (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:826: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:827: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:828: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:829: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:830: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:832: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:833: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:834: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:835: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:838: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:840: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:841: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:843: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:844: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:845: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:848: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/molecule.h:850: warning: Member m_frozenAtomMask (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. d BondTemplate< Molecule_T >... Generating docs for compound Color3f... Generating docs for compound CoordinateBlockGenerator... Generating docs for compound CoordinateSet< T >... Generating docs for compound CrystalTools... Generating docs for compound Cube... Generating docs for compound DihedralIterator... Generating docs for compound Elements... Generating docs for compound GaussianSet... Generating docs for compound GaussianSetTools... Generating docs for compound Graph... Generating docs for compound hBondRecord... Generating docs for compound Layer... Generating docs for compound LayerData... Generating docs for compound LayerManager... Generating docs for compound Mesh... Generating docs for compound Molecule... Generating docs for compound MoleculeInfo... Generating docs for compound Mutex... Generating docs for compound NameAtomTyper... Generating docs for compound NeighborPerceiver... Generating docs for compound Residue... Generating docs for compound ResidueData... Generating docs for compound RingPerceiver... Generating docs for compound SecondaryStructureAssigner... Generating docs for compound SharedMutex... Generating docs for compound SlaterSet... Generating docs for compound SlaterSetTools... Generating docs for compound SpaceGroups... Generating docs for compound SymbolAtomTyper... Generating docs for compound UnitCell... Generating docs for compound Variant... Generating docs for compound VariantMap... Generating docs for compound ArrayRefContainer< T >... Generating docs for compound CaseInsensitiveComparator... Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound CjsonFormat... Generating docs for compound CmlFormat... Generating docs for compound CMsgPackFormat... Generating docs for compound DcdFormat... Generating docs for compound FileFormat... Generating docs for compound FileFormatManager... Generating docs for compound GromacsFormat... Generating docs for compound Hdf5DataFormat... Generating docs for compound LammpsDataFormat... Generating docs for compound LammpsTrajectoryFormat... Generating docs for compound MdlFormat... Generating docs for compound MMTFFormat... Generating docs for compound OutcarFormat... Generating docs for compound PdbFormat... Generating docs for compound PoscarFormat... Generating docs for compound TrrFormat... Generating docs for compound TurbomoleFormat... Generating docs for compound XyzFormat... Generating docs for compound BatchJob... Generating docs for compound Client... Generating docs for compound InputGenerator... Generating docs for compound InputGeneratorDialog... Generating docs for compound InputGeneratorWidget... Generating docs for compound JobObject... Generating docs for compound JsonRpcClient... Generating docs for compound MoleQueueDialog... Generating docs for compound MoleQueueManager... Generating docs for compound MoleQueueQueueListModel... Generating docs for compound MoleQueueWidget... Generating docs for compound BackgroundFileFormat... Generating docs for compound ColorButton... Generating docs for compound ContainerWidget... Generating docs for compound CustomElementDialog... Generating docs for compound ElementDetail... Generating docs for compound ElementItem... Generating docs for compound ElementTranslator... Generating docs for compound ExtensionPlugin... Generating docs for compound ExtensionPluginFactory... Generating docs for compound FileBrowseWidget... Generating docs for compound FileFormatDialog... Generating docs for compound GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound HydrogenTools... Generating docs for compound InsertFragmentDialog... Generating docs for compound InterfaceScript... Generating docs for compound InterfaceWidget... Generating docs for compound JsonWidget... Generating docs for compound LayerModel... Generating docs for compound MeshGenerator... Generating docs for compound Molecule... Generating docs for compound MoleculeModel... Generating docs for/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:56: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:50: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:37: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:44: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/multiviewwidget.h:47: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:139: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:140: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:141: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:142: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:143: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:675: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:682: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:115: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/layermanager.h:116: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:226: warning: Member atomLabel(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:227: warning: Member setAtomLabel(Index atomId, const std::string &label, const QString &undoText=tr("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:241: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:243: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:298: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:299: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:657: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:664: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:666: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:30: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:37: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:40: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule_undo.h:41: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:20: warning: Member SortFilterTreeProxyModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:25: warning: Member filterAcceptsRow(int sourceRow, const QModelIndex &sourceParent) const (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/sortfiltertreeproxymodel.h:30: warning: Member setSourceRoot(const QModelIndex &sourceRoot) (function) of class Avogadro::QtGui::SortFilterTreeProxyModel is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:152: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:181: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/toolplugin.h:182: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gaussianfchk.h:54: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/mopacaux.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:68: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:80: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:82: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:84: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:93: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:94: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:96: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:98: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:100: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:87: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:89: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:93: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:97: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:101: warning: Member solidPipeline() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:112: warning: Member m_perspectiveFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrenderer.h:113: warning: Member m_orthographicFrustum (variable) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:60: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:31: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:32: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:37: warning: Member PLYVisitor(const Camera &camera) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:40: warning: Member begin() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:41: warning: Member end() (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:55: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:56: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:59: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:62: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:63: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/plyvisitor.h:64: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::PLYVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:38: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:41: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:35: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:53: warning: Member setAoEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:59: warning: Member setAoStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:65: warning: Member setEdEnabled(bool enabled) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/solidpipeline.h:75: warning: Member setEdStrength(float strength) (function) of class Avogadro::Rendering::SolidPipeline is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. compound MoleculeSystem... Generating docs for compound MultiViewWidget... Generating docs for compound PeriodicTableScene... Generating docs for compound PeriodicTableView... Generating docs for compound PersistentAtom< Molecule_T >... Generating docs for compound PersistentBond< Molecule_T >... Generating docs for compound PluginLayerManager... Generating docs for compound PythonScript... Generating docs for compound RWAtom... Generating docs for compound RWBond... Generating docs for compound RWLayerManager... Generating docs for compound RWMolecule... Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand... Generating docs for compound ScenePlugin... Generating docs for compound ScenePluginFactory... Generating docs for compound ScenePluginModel... Generating docs for compound ScriptLoader... Generating docs for compound SortFilterTreeProxyModel... Generating docs for compound ToolPlugin... Generating docs for compound ToolPluginFactory... Generating docs for compound ViewFactory... Generating docs for compound ActiveObjects... Generating docs for compound GLWidget... Generating docs for compound QtTextRenderStrategy... Generating docs for compound GamessukOut... Generating docs for compound GAMESSUSOutput... Generating docs for compound GaussianCube... Generating docs for compound GaussianFchk... Generating docs for compound GenericOutput... Generating docs for compound GUKBasisSet... Generating docs for compound MoldenFile... Generating docs for compound MopacAux... Generating docs for compound NWChemJson... Generating docs for compound NWChemLog... Generating docs for compound ORCAOutput... Generating docs for compound AmbientOcclusionSphereGeometry... Generating docs for compound ArcSector... Generating docs for compound ArcStrip... Generating docs for compound ArrowGeometry... Generating docs for compound BezierGeometry... Generating docs for compound BSplineGeometry... Generating docs for compound BufferObject... Generating docs for compound Camera... Generating docs for compound Cartoon... Generating docs for compound ColorNormalVertex... Generating docs for compound ColorTextureVertex... Generating docs for compound CurveGeometry... Generating docs for compound Cylinder... Generating docs for compound CylinderColor... Generating docs for compound CylinderGeometry... Generating docs for compound DashedLineGeometry... Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex... Generating docs for compound Drawable... Generating docs for compound EigenData... Generating docs for compound GeometryNode... Generating docs for compound GeometryVisitor... Generating docs for compound GLRenderer... Generating docs for compound GLRenderVisitor... Generating docs for compound GroupNode... Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo... Generating docs for compound Identifier... Generating docs for compound Line... Generating docs for compound LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Node... Generating docs for compound PLYVisitor... Generating docs for compound Point... Generating docs for compound POVRayVisitor... Generating docs for compound Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Quad... Generating docs for compound QuadOutline... Generating docs for compound Scene... Generating docs for compound Shader... Generating docs for compound ShaderInfo... Generating docs for compound ShaderProgram... Generating docs for compound SolidPipeline... Generating docs for compound Sphere... Generating docs for compound SphereColor... Generating docs for compound SphereGeometry... Generating docs for compound TextLabel2D... Generating docs for compound TextLabel3D... Generating docs for compound TextLabelBase... Generating docs for c/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:19: warning: Member ChartDialog(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:22: warning: Member chartWidget() (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:24: warning: Member sizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartdialog.h:25: warning: Member minimumSizeHint() const override (function) of class Avogadro::VTK::ChartDialog is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:34: warning: Member Axis (enumeration) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:31: warning: Member ChartWidget(QWidget *p=nullptr) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:40: warning: Member addPlot(const std::vector< float > &x, const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:43: warning: Member addSeries(const std::vector< float > &y, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:46: warning: Member addPlots(const std::vector< std::vector< float > > &plotData, const color4ub &color=color4ub{ 0, 0, 0, 255 }) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:49: warning: Member clearPlots() (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:51: warning: Member setXAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:53: warning: Member setYAxisTitle(const std::string &title) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:55: warning: Member setTickLabels(Axis a, const std::vector< float > &tickPositions, const std::vector< std::string > &tickLabels) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:58: warning: Member setAxisLimits(Axis a, float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:59: warning: Member setXAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:60: warning: Member setYAxisLimits(float min, float max) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:62: warning: Member setFontSize(int size=14) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:63: warning: Member setLineWidth(float width=1.0) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/chartwidget.h:65: warning: Member setAxisLogScale(Axis a, bool logScale) (function) of class Avogadro::VTK::ChartWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/vtkglwidget.h:43: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/qvtkwidget.h:19: warning: Member QVTKWidget(QWidget *parent=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::QVTKWidget is not documented. /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:50: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:65: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:75: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:97: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/crystaltools.h:109: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/cube.h:194: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' ompound TextProperties... Generating docs for compound TextRenderStrategy... Generating docs for compound Texture2D... Generating docs for compound TransformNode... Generating docs for compound Visitor... Generating docs for compound VolumeGeometry... Generating docs for compound VRMLVisitor... Generating docs for compound ChartDialog... Generating docs for compound ChartWidget... Generating docs for compound QVTKWidget... Generating docs for compound vtkGLWidget... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Rendering::ArcSector Generating XML output for class Avogadro::Rendering::ArcStrip Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::VTK::ChartDialog Generating XML output for class Avogadro::VTK::ChartWidget Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Io::CMsgPackFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeometry Generating XML output for class /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/inputgenerator.h:454: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/interfacescript.h:452: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/linestripgeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::Calc::EnergyCalculator Generating XML output for class Avogadro::Calc::EnergyManager Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::QuantumIO::GenericOutput Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InsertFragmentDialog Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Calc::LennardJones Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/molecule.h:173: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/rwmolecule.h:628: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::QuantumIO::ORCAOutput Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::PLYVisitor Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::Rendering::Quad Generating XML output for class Avogadro::Rendering::QuadOutline Generating XML output for class Avogadro::VTK::QVTKWidget Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Rendering::SolidPipeline Generating XML output for class Avogadro::QtGui::SortFilterTreeProxyModel Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace cppoptlib Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file energycalculator.h Generating XML output for file energymanager.h Generating XML output for file lennardjones.h Generating XML output for file lennardjonesdata.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file cmsgpackformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file insertfragmentdialog.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file sortfiltertreeproxymodel.h Generating XML output for file toolplugin.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file genericoutput.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file orca.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arcsector.h Generating XML output for file arcstrip.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file plyvisitor.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file quad.h Generating XML output for file quadoutline.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file solidpipeline.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file chartdialog.h Generating XML output for file chartwidget.h Generating XML output for file qvtkwidget.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 6582/65536 hits=33344 misses=8308 symbol lookup cache used 7303/65536 hits=55816 misses=7303 finished... + popd ~/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.anuJCF + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + '[' /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build + mkdir /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.99.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 -B/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/CMakeFiles /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/CMakeFiles/pugixml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/CMakeFiles/pugixml.dir/build.make thirdparty/CMakeFiles/pugixml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'thirdparty/CMakeFiles/pugixml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 0%] Built target pugixml /usr/bin/make -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/CMakeFiles/struct.dir/build.make thirdparty/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'thirdparty/CMakeFiles/struct.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 1%] Built target struct /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'thirdparty/libgwavi/CMakeFiles/gwavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Built target gwavi /usr/bin/make -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core/CMakeFiles/Headers.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/Headers.dir/build.make avogadro/core/CMakeFiles/Headers.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/Headers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Built target Headers /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/bodr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/bodr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'utilities/bodr/CMakeFiles/bodrparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Built target bodrparse /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/encodefile /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'utilities/encodefile/CMakeFiles/encodefile.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Built target encodefile /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/utilities/resdata /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/resdata /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'utilities/resdata/CMakeFiles/resdataparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 2%] Built target resdataparse /usr/bin/make -f avogadro/core/CMakeFiles/Core.dir/build.make avogadro/core/CMakeFiles/Core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/core /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/core 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/calc/CMakeFiles/Calc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/Calc.dir/build.make avogadro/calc/CMakeFiles/Calc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/calc/CMakeFiles/Calc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 8%] Built target Calc /usr/bin/make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/io /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/io/CMakeFiles/IO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/IO.dir/build.make avogadro/io/CMakeFiles/IO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/io/CMakeFiles/IO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 11%] Built target IO /usr/bin/make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/quantumio/CMakeFiles/QuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/QuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/QuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/quantumio/CMakeFiles/QuantumIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 12%] Built target QuantumIO /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avocjsontocml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 12%] Built target avocjsontocml /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avobabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 13%] Built target avobabel /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 14%] Built target qube /usr/bin/make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/rendering/CMakeFiles/Rendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/Rendering.dir/build.make avogadro/rendering/CMakeFiles/Rendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/rendering/CMakeFiles/Rendering.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Built target Rendering /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Built target QtGui_autogen_timestamp_deps /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 24%] Built target QtGui_autogen /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtgui/CMakeFiles/QtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/QtGui.dir/build.make avogadro/qtgui/CMakeFiles/QtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/QtGui.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QtGui /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QtOpenGL_autogen_timestamp_deps /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 30%] Built target QtOpenGL_autogen /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/QtOpenGL.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 31%] Built target QtOpenGL /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 31%] Built target MoleQueue_autogen_timestamp_deps /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 32%] Built target MoleQueue_autogen /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/molequeue/CMakeFiles/MoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/MoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/MoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/MoleQueue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 34%] Built target MoleQueue /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 34%] Built target QTAIMScenePlugin_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 34%] Built target QTAIMScenePlugin_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target QTAIMScenePlugin /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target ThreeDMol_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 35%] Built target ThreeDMol_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target ThreeDMol /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 36%] Built target ApplyColors_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target ApplyColors_autogen /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target ApplyColors /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 37%] Built target AlignTool_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target AlignTool_autogen /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build.make avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/aligntool/CMakeFiles/AlignTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target AlignTool /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target BondCentric_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 38%] Built target BondCentric_autogen /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Built target BondCentric /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Built target Bonding_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 39%] Built target Bonding_autogen /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Built target Bonding /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Built target Cartoons_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 40%] Built target Cartoons_autogen /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Built target Cartoons /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Built target Centroid_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 41%] Built target Centroid_autogen /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build.make avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/centroid/CMakeFiles/Centroid.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Built target Centroid /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Built target ConfigurePython_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 42%] Built target ConfigurePython_autogen /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build.make avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/configurepython/CMakeFiles/ConfigurePython.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Built target ConfigurePython /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Built target CopyPaste_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 43%] Built target CopyPaste_autogen /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Built target CopyPaste /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Built target Crystal_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 44%] Built target Crystal_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Built target Crystal /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Built target CrystalScene_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 46%] Built target CrystalScene_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Built target CrystalScene /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Built target CustomElements_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 47%] Built target CustomElements_autogen /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target CustomElements /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target Editor_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 48%] Built target Editor_autogen /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 49%] Built target Editor /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 49%] Built target FetchPDB_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 49%] Built target FetchPDB_autogen /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Built target FetchPDB /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 50%] Built target Focus_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Built target Focus_autogen /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Built target Focus /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Built target Hydrogens_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 51%] Built target Hydrogens_autogen /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Built target Hydrogens /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Built target ImportPQR_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 52%] Built target ImportPQR_autogen /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 53%] Built target ImportPQR /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 53%] Built target NucleicInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 53%] Built target NucleicInput_autogen /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 54%] Built target NucleicInput /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 54%] Built target Label_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target Label_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target Label /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target LabelEditor_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 55%] Built target LabelEditor_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target LabelEditor /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target LammpsInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 56%] Built target LammpsInput_autogen /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Built target LammpsInput /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 57%] Built target LineFormatInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 58%] Built target LineFormatInput_autogen /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target LineFormatInput /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target Manipulator_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 59%] Built target Manipulator_autogen /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Built target Manipulator /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Built target MeasureTool_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 60%] Built target MeasureTool_autogen /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 61%] Built target MeasureTool /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 61%] Built target Navigator_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 61%] Built target Navigator_autogen /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Built target Navigator /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 62%] Built target NetworkDatabases_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target NetworkDatabases_autogen /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target NetworkDatabases /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target OpenBabel_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 63%] Built target OpenBabel_autogen /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 65%] Built target OpenBabel /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 65%] Built target OpenMMInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 65%] Built target OpenMMInput_autogen /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Built target OpenMMInput /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Built target PlayerTool_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 66%] Built target PlayerTool_autogen /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target PlayerTool /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target PLY_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 67%] Built target PLY_autogen /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ply/CMakeFiles/PLY.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build.make avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ply/CMakeFiles/PLY.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Built target PLY /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 68%] Built target POVRay_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target POVRay_autogen /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target POVRay /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target PropertyTables_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 69%] Built target PropertyTables_autogen /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 70%] Built target PropertyTables /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 70%] Built target ResetView_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 70%] Built target ResetView_autogen /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Built target ResetView /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Built target Select_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 71%] Built target Select_autogen /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target Select /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 72%] Built target Selection_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 73%] Built target Selection_autogen /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target Selection /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target SpaceGroup_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target SpaceGroup_autogen /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target SpaceGroup /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target Surfaces_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 74%] Built target Surfaces_autogen /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 76%] Built target Surfaces /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 76%] Built target TemplateTool_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 76%] Built target TemplateTool_autogen /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build.make avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/templatetool/CMakeFiles/TemplateTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target TemplateTool /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target Vibrations_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 77%] Built target Vibrations_autogen /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build.make avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vibrations/CMakeFiles/Vibrations.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target Vibrations /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target VRML_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 78%] Built target VRML_autogen /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target VRML /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target apbs_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 79%] Built target apbs_autogen /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target apbs /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target CoordinateEditor_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 80%] Built target CoordinateEditor_autogen /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target CoordinateEditor /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target Cp2kInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 81%] Built target Cp2kInput_autogen /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target Cp2kInput /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target Forcefield_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 82%] Built target Forcefield_autogen /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build.make avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/forcefield/CMakeFiles/Forcefield.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Built target Forcefield /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Built target GamessInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 84%] Built target GamessInput_autogen /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 85%] Built target GamessInput /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 85%] Built target InsertFragment_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 85%] Built target InsertFragment_autogen /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Built target InsertFragment /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 86%] Built target MolecularProperties_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target MolecularProperties_autogen /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target MolecularProperties /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target SVG_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target SVG_autogen /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target SVG /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target commands_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 87%] Built target commands_autogen /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Built target commands /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Built target QuantumInput_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 88%] Built target QuantumInput_autogen /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Built target QuantumInput /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Built target ScriptCharges_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 89%] Built target ScriptCharges_autogen /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Built target ScriptCharges /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Built target ScriptFileFormats_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 90%] Built target ScriptFileFormats_autogen /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Built target ScriptFileFormats /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Built target PluginDownloader_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 91%] Built target PluginDownloader_autogen /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target PluginDownloader /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target BallStick_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target BallStick_autogen /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target BallStick /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target CloseContacts_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 92%] Built target CloseContacts_autogen /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target CloseContacts /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Force_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Force_autogen /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Force /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Licorice_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Licorice_autogen /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Licorice /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Meshes_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 93%] Built target Meshes_autogen /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target Meshes /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target NonCovalent_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target NonCovalent_autogen /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target NonCovalent /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target VanDerWaals_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 94%] Built target VanDerWaals_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 95%] Built target VanDerWaals /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 95%] Built target Wireframe_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 95%] Built target Wireframe_autogen /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 96%] Built target Wireframe /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 96%] Built target OverlayAxes_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 96%] Built target OverlayAxes_autogen /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target OverlayAxes /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target QTAIMExtension_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 97%] Built target QTAIMExtension_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target QTAIMExtension /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins_autogen_timestamp_deps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target QtPlugins_autogen_timestamp_deps /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins_autogen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [ 99%] Built target QtPlugins_autogen /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/avogadro/qtplugins/CMakeFiles/QtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/QtPlugins.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' [100%] Built target QtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: 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-- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/qttextrenderstrategy.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/qtopengl/avogadroqtopenglexport.h -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1.99.0 -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1 -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so.1.99.0" to "/usr/lib64" -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so -- Installing: /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/include/avogadro2/avogadro/molequeue/batchjob.h -- Installing: 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/psi4.py /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/terachem.py /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/ani2x.py: no change 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/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change + ln -sf /usr/lib64/python3.13/site-packages/avogadro2/scripts /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/scripts + chrpath -d /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCalc.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroCore.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroIO.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroMoleQueue.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtGui.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtOpenGL.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQtPlugins.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroQuantumIO.so /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/libAvogadroRendering.so + rm -rf /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc + /usr/bin/find-debuginfo -j6 --strict-build-id -m -i --build-id-seed 1.99.0-2.fc42 --unique-debug-suffix -1.99.0-2.fc42.x86_64 --unique-debug-src-base avogadro2-libs-1.99.0-2.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0 find-debuginfo: starting Extracting debug info from 9 files DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.99.0-2.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/ani2x.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/gfn1.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/gfn2.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/gfnff.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j6 Bytecompiling .py files below /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j6 /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/libgwavi.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ThreeDMol.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/AlignTool.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/BondCentric.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/ApplyColors.a: replacing with normalized version 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version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Force.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/BallStick.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/NonCovalent.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/PluginDownloader.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Licorice.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Wireframe.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/Meshes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/OverlayAxes.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/VanDerWaals.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gamessuk.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/qchem.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMScenePlugin.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/nwchem.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/avogadro2/staticplugins/QTAIMExtension.a: replacing with normalized version /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gaussian.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/dalton.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/terachem.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/psi4.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/molpro.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/orca.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/pyscf.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/inputGenerators/__pycache__/mopac.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/formatScripts/__pycache__/zyx.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/__pycache__/gfn2.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/__pycache__/gfn1.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/__pycache__/antechamber.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/__pycache__/gfnff.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/charges/__pycache__/xtb.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/avogadro2/scripts/energy/__pycache__/ani2x.cpython-313.pyc: rewriting with normalized contents Scanned 432 directories and 2370 files, processed 83 inodes, 83 modified (65 replaced + 18 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/avogadro2-libs-1.99.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: avogadro2-libs-1.99.0-2.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2GBdoF + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/README-fragments.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.G4w3jY + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/molecules/LICENSE-molecules /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/fragments/LICENSE-fragments /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.13/site-packages/avogadro2/scripts Provides: avogadro2-libs = 1.99.0-2.fc42 avogadro2-libs(x86-64) = 1.99.0-2.fc42 avogadro2-libs-static = 0:1.99.0-2.fc42 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.99.0-2.fc42 python3.13-avogadro2-libs = 1.99.0-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGLEW.so.2.2()(64bit) libGLX.so.0()(64bit) libOpenGL.so.0()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.2()(64bit) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.99.0-2.fc42 Processing files: avogadro2-libs-devel-1.99.0-2.fc42.x86_64 Provides: avogadro2-libs-devel = 1.99.0-2.fc42 avogadro2-libs-devel(x86-64) = 1.99.0-2.fc42 cmake(AvogadroLibs) = 1.99.0 cmake(avogadrolibs) = 1.99.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) Processing files: avogadro2-libs-doc-1.99.0-2.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UOc4xl + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + DOCDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/README.md /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/build/docs/html /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.xEbsmh + umask 022 + cd /builddir/build/BUILD/avogadro2-libs-1.99.0-build + cd avogadrolibs-1.99.0 + LICENSEDIR=/builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadro2-libs-1.99.0-build/avogadrolibs-1.99.0/LICENSE /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.99.0-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.99.0-2.fc42.x86_64 Provides: avogadro2-libs-debugsource = 1.99.0-2.fc42 avogadro2-libs-debugsource(x86-64) = 1.99.0-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.99.0-2.fc42.x86_64 Provides: avogadro2-libs-debuginfo = 1.99.0-2.fc42 avogadro2-libs-debuginfo(x86-64) = 1.99.0-2.fc42 debuginfo(build-id) = 1225f2d5c307d8826db18b791fa1bf05554b5748 debuginfo(build-id) = 3b6ec4f377b7bbdfdf9d0e35670f90a13aa43d05 debuginfo(build-id) = 3dda1db68503e7d676c33f03fc9a078af7bb37c9 debuginfo(build-id) = 4b526d149edade95a985a5f287e26323a7b180e6 debuginfo(build-id) = 9ccca6dbacd2f3dd6ad08ba1fa9b237f5796bef0 debuginfo(build-id) = b2ae68aa21addd27b1a0d4ce4ffddfea380f2a60 debuginfo(build-id) = b89807022f578407ff37fdb1bb379313c38357e9 debuginfo(build-id) = d079d8c4eeeeb1a0ef446a1a4e7bad64db883545 debuginfo(build-id) = dfd1e4383764bda3ecdaa82739043490ba4ab0ba libAvogadroCalc.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroCore.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroIO.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroMoleQueue.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroQtGui.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroQtOpenGL.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroQtPlugins.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroQuantumIO.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) libAvogadroRendering.so.1.99.0-1.99.0-2.fc42.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(x86-64) = 1.99.0-2.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/avogadro2-libs-1.99.0-build/BUILDROOT Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.99.0-2.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.99.0-2.fc42.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.99.0-2.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-1.99.0-2.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.99.0-2.fc42.x86_64.rpm RPM build warnings: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.13/site-packages/avogadro2/scripts Child return code was: 0