Mock Version: 6.0 Mock Version: 6.0 Mock Version: 6.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/f42-build-56955599-6547237/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b3f414493e4548fcb9353b6731ecdd26', '-D', '/var/lib/mock/f42-build-56955599-6547237/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1734652800 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-21.fc42.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/f42-build-56955599-6547237/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '578a2be78f6c4aa19d1e0d6adb516e1a', '-D', '/var/lib/mock/f42-build-56955599-6547237/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1734652800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.jOldAh + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + test -d /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/rm -rf /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.tzf33G + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + rm -rf NEAT-0.9.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-neatdend-0.9.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NEAT-0.9.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1734652800 + GIT_AUTHOR_DATE=@1734652800 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-neatdend-0.9.2 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-feat-support-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/neuron/neuronmodel.py... Applied patch neat/tools/simtools/neuron/neuronmodel.py cleanly. + GIT_COMMITTER_DATE=@1734652800 + GIT_AUTHOR_DATE=@1734652800 + /usr/bin/git commit -q -m 0001-feat-support-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/504b39822b9913e5a8c6aff65df840cc2e31167d.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/net/netsim.pyx... Applied patch neat/tools/simtools/net/netsim.pyx cleanly. + GIT_COMMITTER_DATE=@1734652800 + GIT_AUTHOR_DATE=@1734652800 + /usr/bin/git commit -q -m 504b39822b9913e5a8c6aff65df840cc2e31167d.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/plottools/scalebars.py... Applied patch neat/tools/plottools/scalebars.py cleanly. + GIT_COMMITTER_DATE=@1734652800 + GIT_AUTHOR_DATE=@1734652800 + /usr/bin/git commit -q -m 8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch --author 'rpm-build ' + sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt + sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt + sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt + sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt + sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt + sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt + sed -i 's/^cython~=0.29.4/cython>=3.0.0/' requirements/requirements.txt ++ grep -rl 'np\.NaN' + sed -i 's/np\.NaN/np.nan/g' neat/trees/sovtree.py ++ grep -rl 'np\.infty' + sed -i 's/np\.infty/np.inf/g' neat/trees/greenstree.py tests/test_net.py ++ grep -rl 'np\.product' + sed -i 's/np\.product/np.prod/g' tests/test_ionchannels.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.hhVHUW + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement not satisfied: setuptools Handling wheel from build-system.requires Requirement not satisfied: wheel Handling Cython from build-system.requires Requirement not satisfied: Cython Handling numpy from build-system.requires Requirement not satisfied: numpy Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-21.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/f42-build-56955599-6547237/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6f3031b6dcd446c1bb8a4e89fdd3ffec', '-D', '/var/lib/mock/f42-build-56955599-6547237/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1734652800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.jVJKK6 + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. Compiling neat/tools/simtools/net/netsim.pyx because it changed. [1/1] Cythonizing neat/tools/simtools/net/netsim.pyx running egg_info creating neatdend.egg-info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt writing manifest file 'neatdend.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.2) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: matplotlib>=3.4.1 Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: scipy>=1.6.3 Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: sympy>=1.7.1 Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: scikit-learn>=0.24.2 + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-21.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/f42-build-56955599-6547237/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '87276b4c84d54aed81d94dc3fd41620f', '-D', '/var/lib/mock/f42-build-56955599-6547237/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target ppc64le --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1734652800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.XNHJIS + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.2) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: matplotlib>=3.4.1 (installed: matplotlib 3.10.0) Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scipy>=1.6.3 (installed: scipy 1.14.1) Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: sympy>=1.7.1 (installed: sympy 1.13.3) Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scikit-learn>=0.24.2 (installed: scikit-learn 1.6.0) + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-21.fc42.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/f42-build-56955599-6547237/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd1743a1a5c4c4a35986d91e1fd24e9ae', '-D', '/var/lib/mock/f42-build-56955599-6547237/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1734652800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.dilgQJ + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.2) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: matplotlib>=3.4.1 (installed: matplotlib 3.10.0) Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scipy>=1.6.3 (installed: scipy 1.14.1) Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: sympy>=1.7.1 (installed: sympy 1.13.3) Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scikit-learn>=0.24.2 (installed: scikit-learn 1.6.0) + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.o6ZKIQ + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir Processing /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info creating /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info writing /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vgp34k6l/neatdend-0.9.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: neatdend Building wheel for neatdend (pyproject.toml): started Running command Building wheel for neatdend (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running bdist_wheel running build running build_py creating build creating build/lib.linux-ppc64le-cpython-313 creating build/lib.linux-ppc64le-cpython-313/neat copying neat/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat copying neat/__version__.py -> build/lib.linux-ppc64le-cpython-313/neat creating build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/compartmenttree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/morphtree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/netree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/phystree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/stree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/sovtree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees copying neat/trees/greenstree.py -> build/lib.linux-ppc64le-cpython-313/neat/trees creating build/lib.linux-ppc64le-cpython-313/neat/tools copying neat/tools/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/tools copying neat/tools/kernelextraction.py -> build/lib.linux-ppc64le-cpython-313/neat/tools creating build/lib.linux-ppc64le-cpython-313/neat/tools/fittools copying neat/tools/fittools/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/fittools copying neat/tools/fittools/compartmentfitter.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/fittools copying neat/tools/fittools/histogramsegmentation.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/fittools copying neat/tools/fittools/iepsolver.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/fittools copying neat/tools/fittools/zerofinding.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/fittools creating build/lib.linux-ppc64le-cpython-313/neat/tools/plottools copying neat/tools/plottools/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/plottools copying neat/tools/plottools/scalebars.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/plottools creating build/lib.linux-ppc64le-cpython-313/neat/tools/simtools creating build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/neuronmodel.py -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron creating build/lib.linux-ppc64le-cpython-313/neat/channels copying neat/channels/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/channels copying neat/channels/concmechs.py -> build/lib.linux-ppc64le-cpython-313/neat/channels copying neat/channels/ionchannels.py -> build/lib.linux-ppc64le-cpython-313/neat/channels copying neat/channels/writecppcode.py -> build/lib.linux-ppc64le-cpython-313/neat/channels copying neat/channels/writemodfiles.py -> build/lib.linux-ppc64le-cpython-313/neat/channels creating build/lib.linux-ppc64le-cpython-313/neat/channels/channelcollection copying neat/channels/channelcollection/__init__.py -> build/lib.linux-ppc64le-cpython-313/neat/channels/channelcollection copying neat/channels/channelcollection/channelcollection.py -> build/lib.linux-ppc64le-cpython-313/neat/channels/channelcollection running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'neat.tools.simtools.net' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.net' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neat.tools.simtools.net' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neat.tools.simtools.net' to be distributed and are already explicitly excluding 'neat.tools.simtools.net' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'neat.tools.simtools.neuron.mech_storage' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.neuron.mech_storage' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neat.tools.simtools.neuron.mech_storage' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neat.tools.simtools.neuron.mech_storage' to be distributed and are already explicitly excluding 'neat.tools.simtools.neuron.mech_storage' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.cc -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.h -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.cc -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.h -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.cc -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.h -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Tools.cc -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.cpp -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.pyx -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net creating build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/gap.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/rel.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/channels/compilechannels -> build/lib.linux-ppc64le-cpython-313/neat/channels running build_ext building 'netsim' extension creating build/temp.linux-ppc64le-cpython-313 creating build/temp.linux-ppc64le-cpython-313/neat creating build/temp.linux-ppc64le-cpython-313/neat/tools creating build/temp.linux-ppc64le-cpython-313/neat/tools/simtools creating build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Ionchannels.cc -o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Ionchannels.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/NETC.cc -o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/NETC.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Synapses.cc -o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Synapses.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Tools.cc -o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Tools.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/netsim.cpp -o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/netsim.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Ionchannels.o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/NETC.o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Synapses.o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/Tools.o build/temp.linux-ppc64le-cpython-313/neat/tools/simtools/net/netsim.o -L/usr/lib64 -o build/lib.linux-ppc64le-cpython-313/neat/netsim.cpython-313-powerpc64le-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting neat/channels/compilechannels -> build/scripts-3.13 changing mode of build/scripts-3.13/compilechannels from 644 to 755 installing to build/bdist.linux-ppc64le/wheel running install running install_lib creating build/bdist.linux-ppc64le creating build/bdist.linux-ppc64le/wheel creating build/bdist.linux-ppc64le/wheel/neat copying build/lib.linux-ppc64le-cpython-313/neat/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat copying build/lib.linux-ppc64le-cpython-313/neat/__version__.py -> build/bdist.linux-ppc64le/wheel/./neat creating build/bdist.linux-ppc64le/wheel/neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/compartmenttree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/morphtree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/netree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/phystree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/stree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/sovtree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees copying build/lib.linux-ppc64le-cpython-313/neat/trees/greenstree.py -> build/bdist.linux-ppc64le/wheel/./neat/trees creating build/bdist.linux-ppc64le/wheel/neat/tools copying build/lib.linux-ppc64le-cpython-313/neat/tools/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/tools copying build/lib.linux-ppc64le-cpython-313/neat/tools/kernelextraction.py -> build/bdist.linux-ppc64le/wheel/./neat/tools creating build/bdist.linux-ppc64le/wheel/neat/tools/fittools copying build/lib.linux-ppc64le-cpython-313/neat/tools/fittools/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/fittools copying build/lib.linux-ppc64le-cpython-313/neat/tools/fittools/compartmentfitter.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/fittools copying build/lib.linux-ppc64le-cpython-313/neat/tools/fittools/histogramsegmentation.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/fittools copying build/lib.linux-ppc64le-cpython-313/neat/tools/fittools/iepsolver.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/fittools copying build/lib.linux-ppc64le-cpython-313/neat/tools/fittools/zerofinding.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/fittools creating build/bdist.linux-ppc64le/wheel/neat/tools/plottools copying build/lib.linux-ppc64le-cpython-313/neat/tools/plottools/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/plottools copying build/lib.linux-ppc64le-cpython-313/neat/tools/plottools/scalebars.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/plottools creating build/bdist.linux-ppc64le/wheel/neat/tools/simtools creating build/bdist.linux-ppc64le/wheel/neat/tools/simtools/neuron copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/neuronmodel.py -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron creating build/bdist.linux-ppc64le/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/gap.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/rel.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/neuron/mech_storage creating build/bdist.linux-ppc64le/wheel/neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/Ionchannels.cc -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/Ionchannels.h -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/NETC.cc -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/NETC.h -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/Synapses.cc -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/Synapses.h -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/Tools.cc -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/netsim.cpp -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net copying build/lib.linux-ppc64le-cpython-313/neat/tools/simtools/net/netsim.pyx -> build/bdist.linux-ppc64le/wheel/./neat/tools/simtools/net creating build/bdist.linux-ppc64le/wheel/neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/channels/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/channels/concmechs.py -> build/bdist.linux-ppc64le/wheel/./neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/channels/ionchannels.py -> build/bdist.linux-ppc64le/wheel/./neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/channels/writecppcode.py -> build/bdist.linux-ppc64le/wheel/./neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/channels/writemodfiles.py -> build/bdist.linux-ppc64le/wheel/./neat/channels creating build/bdist.linux-ppc64le/wheel/neat/channels/channelcollection copying build/lib.linux-ppc64le-cpython-313/neat/channels/channelcollection/__init__.py -> build/bdist.linux-ppc64le/wheel/./neat/channels/channelcollection copying build/lib.linux-ppc64le-cpython-313/neat/channels/channelcollection/channelcollection.py -> build/bdist.linux-ppc64le/wheel/./neat/channels/channelcollection copying build/lib.linux-ppc64le-cpython-313/neat/channels/compilechannels -> build/bdist.linux-ppc64le/wheel/./neat/channels copying build/lib.linux-ppc64le-cpython-313/neat/netsim.cpython-313-powerpc64le-linux-gnu.so -> build/bdist.linux-ppc64le/wheel/./neat running install_egg_info Copying neatdend.egg-info to build/bdist.linux-ppc64le/wheel/./neatdend-0.9.1-py3.13.egg-info running install_scripts creating build/bdist.linux-ppc64le/wheel/neatdend-0.9.1.data creating build/bdist.linux-ppc64le/wheel/neatdend-0.9.1.data/scripts copying build/scripts-3.13/compilechannels -> build/bdist.linux-ppc64le/wheel/neatdend-0.9.1.data/scripts changing mode of build/bdist.linux-ppc64le/wheel/neatdend-0.9.1.data/scripts/compilechannels to 755 creating build/bdist.linux-ppc64le/wheel/neatdend-0.9.1.dist-info/WHEEL creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-wheel-fc1irgvp/.tmp-o6_vtt5i/neatdend-0.9.1-cp313-cp313-linux_ppc64le.whl' and adding 'build/bdist.linux-ppc64le/wheel' to it adding 'neat/__init__.py' adding 'neat/__version__.py' adding 'neat/netsim.cpython-313-powerpc64le-linux-gnu.so' adding 'neat/channels/__init__.py' adding 'neat/channels/compilechannels' adding 'neat/channels/concmechs.py' adding 'neat/channels/ionchannels.py' adding 'neat/channels/writecppcode.py' adding 'neat/channels/writemodfiles.py' adding 'neat/channels/channelcollection/__init__.py' adding 'neat/channels/channelcollection/channelcollection.py' adding 'neat/tools/__init__.py' adding 'neat/tools/kernelextraction.py' adding 'neat/tools/fittools/__init__.py' adding 'neat/tools/fittools/compartmentfitter.py' adding 'neat/tools/fittools/histogramsegmentation.py' adding 'neat/tools/fittools/iepsolver.py' adding 'neat/tools/fittools/zerofinding.py' adding 'neat/tools/plottools/__init__.py' adding 'neat/tools/plottools/scalebars.py' adding 'neat/tools/simtools/net/Ionchannels.cc' adding 'neat/tools/simtools/net/Ionchannels.h' adding 'neat/tools/simtools/net/NETC.cc' adding 'neat/tools/simtools/net/NETC.h' adding 'neat/tools/simtools/net/Synapses.cc' adding 'neat/tools/simtools/net/Synapses.h' adding 'neat/tools/simtools/net/Tools.cc' adding 'neat/tools/simtools/net/netsim.cpp' adding 'neat/tools/simtools/net/netsim.pyx' adding 'neat/tools/simtools/neuron/__init__.py' adding 'neat/tools/simtools/neuron/neuronmodel.py' adding 'neat/tools/simtools/neuron/mech_storage/CaDyn.mod' adding 'neat/tools/simtools/neuron/mech_storage/CaPump.mod' adding 'neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp2.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUConductance.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUReversal.mod' adding 'neat/tools/simtools/neuron/mech_storage/Shunt.mod' adding 'neat/tools/simtools/neuron/mech_storage/SinClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/VecStim.mod' adding 'neat/tools/simtools/neuron/mech_storage/WNClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca_.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca__.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod' adding 'neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod' adding 'neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/gap.mod' adding 'neat/tools/simtools/neuron/mech_storage/rel.mod' adding 'neat/tools/simtools/neuron/mech_storage/release_BMK.mod' adding 'neat/trees/__init__.py' adding 'neat/trees/compartmenttree.py' adding 'neat/trees/greenstree.py' adding 'neat/trees/morphtree.py' adding 'neat/trees/netree.py' adding 'neat/trees/phystree.py' adding 'neat/trees/sovtree.py' adding 'neat/trees/stree.py' adding 'neatdend-0.9.1.data/scripts/compilechannels' adding 'neatdend-0.9.1.dist-info/LICENSE.txt' adding 'neatdend-0.9.1.dist-info/METADATA' adding 'neatdend-0.9.1.dist-info/WHEEL' adding 'neatdend-0.9.1.dist-info/top_level.txt' adding 'neatdend-0.9.1.dist-info/RECORD' removing build/bdist.linux-ppc64le/wheel Building wheel for neatdend (pyproject.toml): finished with status 'done' Created wheel for neatdend: filename=neatdend-0.9.1-cp313-cp313-linux_ppc64le.whl size=1646959 sha256=7beb17be35f9352500161a860056f700d0de62ca5b5e3db1f2a4e0214a90625e Stored in directory: /builddir/.cache/pip/wheels/4c/52/e5/f12a0b26b7bc958a1b068dd72e437c3fd1e5ec3827dcb974e8 Successfully built neatdend + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zgwc6q + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + '[' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build + mkdir /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 ++ ls /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir/neatdend-0.9.1-cp313-cp313-linux_ppc64le.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=neatdend==0.9.1 + '[' -z neatdend==0.9.1 ']' + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir neatdend==0.9.1 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir Processing ./pyproject-wheeldir/neatdend-0.9.1-cp313-cp313-linux_ppc64le.whl Installing collected packages: neatdend Successfully installed neatdend-0.9.1 + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/compilechannels /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/compilechannels: updating + rm -rfv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --record /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-record + rm -fv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD removed '/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/REQUESTED removed '/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-files --output-modules /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-modules --buildroot /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-21.fc42.ppc64le-pyproject-record --prefix /usr -l neat + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 0.9.2-21.fc42 --unique-debug-suffix -0.9.2-21.fc42.ppc64le --unique-debug-src-base python-neatdend-0.9.2-21.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/netsim.pyx is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUConductance.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/Shunt.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/VecStim.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/WNClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/gap.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/rel.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/release_BMK.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-21.fc42.ppc64le/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 Bytecompiling .py files below /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/neat/channels/ionchannels.py:111: SyntaxWarning: invalid escape sequence '\o' /usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:962: SyntaxWarning: invalid escape sequence '\l' /usr/lib64/python3.13/site-packages/neat/channels/ionchannels.py:111: SyntaxWarning: invalid escape sequence '\o' /usr/lib64/python3.13/site-packages/neat/trees/netree.py:21: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:962: SyntaxWarning: invalid escape sequence '\l' /usr/lib64/python3.13/site-packages/neat/trees/netree.py:21: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2405: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2639: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2405: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2639: SyntaxWarning: invalid escape sequence '\m' Bytecompiling .py files below /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j8 /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/writecppcode.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/writemodfiles.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/concmechs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/__pycache__/channelcollection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/ionchannels.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/ionchannels.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/histogramsegmentation.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/histogramsegmentation.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/plottools/__pycache__/scalebars.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/plottools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/iepsolver.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/iepsolver.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/zerofinding.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/compartmentfitter.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/zerofinding.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/neuronmodel.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/compartmentfitter.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/phystree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/netree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/phystree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/netree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/greenstree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/compartmenttree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/neuronmodel.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/kernelextraction.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/__pycache__/__version__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/sovtree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/stree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/kernelextraction.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/compartmenttree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/morphtree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/morphtree.cpython-313.pyc: replacing with normalized version Scanned 40 directories and 135 files, processed 39 inodes, 39 modified (22 replaced + 17 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-neatdend-0.9.2-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.f9SfwA + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir testdir ~/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/testdir ~/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 + pushd testdir + PYTHONPATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/lib/python3.13/site-packages:/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/lib64/python3.13/site-packages + /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/bin/compilechannels default Warning: no DISPLAY environment variable. --No graphics will be displayed. /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron Mod files: "mech/mech//CaDyn.mod" "mech/mech//CaPump.mod" "mech/mech//IKv3_1.mod" "mech/mech//INa_Ta.mod" "mech/mech//ISK.mod" "mech/mech//ITestChannel.mod" "mech/mech//ITestChannel2.mod" "mech/mech//Ih.mod" "mech/mech//NMDA_Mg_T.mod" "mech/mech//OUClamp.mod" "mech/mech//OUClamp2.mod" "mech/mech//OUConductance.mod" "mech/mech//OUReversal.mod" "mech/mech//Shunt.mod" "mech/mech//SinClamp.mod" "mech/mech//VecStim.mod" "mech/mech//WNClamp.mod" "mech/mech//conc_ca.mod" "mech/mech//conc_ca_.mod" "mech/mech//conc_ca__.mod" "mech/mech//double_exp_AMPA_NMDA.mod" "mech/mech//double_exp_AMPA_NMDA_modified.mod" "mech/mech//double_exp_AMPA_NMDA_modified2.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled_prox.mod" "mech/mech//double_exp_AMPA_NMDA_v_from_vector.mod" "mech/mech//epsc_double_exp.mod" "mech/mech//exp_AMPA_NMDA.mod" "mech/mech//gap.mod" "mech/mech//rel.mod" "mech/mech//release_BMK.mod" Creating 'ppc64le' directory for .o files. -> NMODL ../mech//CaPump.mod -> NMODL ../mech//CaDyn.mod -> NMODL ../mech//IKv3_1.mod -> Compiling mod_func.cpp Translating CaDyn.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/CaDyn.c Translating IKv3_1.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/IKv3_1.c Translating CaPump.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/CaPump.c Thread Safe Thread Safe -> NMODL ../mech//INa_Ta.mod -> NMODL ../mech//ISK.mod Thread Safe -> NMODL ../mech//ITestChannel.mod Translating ISK.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/ISK.c Translating INa_Ta.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/INa_Ta.c Thread Safe Translating ITestChannel.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/ITestChannel.c -> NMODL ../mech//ITestChannel2.mod Thread Safe Thread Safe -> NMODL ../mech//Ih.mod -> NMODL ../mech//NMDA_Mg_T.mod Translating ITestChannel2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/ITestChannel2.c Translating Ih.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/Ih.c Translating NMDA_Mg_T.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/NMDA_Mg_T.c Notice: Use of POINTER is not thread safe. Thread Safe Thread Safe -> NMODL ../mech//OUClamp.mod NEURON's CVode method ignores conservation -> NMODL ../mech//OUClamp2.mod Notice: Assignment to the GLOBAL variable, "rmd2u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd2b", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1b", is not thread safe Translating OUClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/OUClamp.c Notice: set_seed is not thread safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE -> NMODL ../mech//OUConductance.mod Translating OUClamp2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/OUClamp2.c -> NMODL ../mech//OUReversal.mod Translating OUConductance.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packageThread Safe s/neat/tools/simtools/neuron/ppc64le/OUConductance.c Notice: set_seed is not thread safe -> NMODL ../mech//Shunt.mod Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE Translating OUReversal.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/OUReversal.c -> NMODL ../mech//SinClamp.mod Notice: set_seed is not thread safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE Translating Shunt.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/Shunt.c Thread Safe Translating SinClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/SinClamp.c -> NMODL ../mech//VecStim.mod -> NMODL ../mech//WNClamp.mod Thread Safe -> NMODL ../mech//conc_ca.mod Translating VecStim.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/VecStim.c Translating WNClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/WNClamp.c Notice: VERBATIM blocks are not thread safe Thread Safe -> NMODL ../mech//conc_ca_.mod -> NMODL ../mech//conc_ca__.mod Translating conc_ca.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/conc_ca.c Translating conc_ca_.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/conc_ca_.c Thread Safe Translating conc_ca__.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/conc_ca__.c Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA.mod -> NMODL ../mech//double_exp_AMPA_NMDA_modified.mod Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_modified2.mod Translating double_exp_AMPA_NMDA_modified.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA_modified.c Translating double_exp_AMPA_NMDA.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA.c Thread Safe Thread Safe Translating double_exp_AMPA_NMDA_modified2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA_modified2.c -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled.mod -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled_prox.mod Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_v_from_vector.mod Translating double_exp_AMPA_NMDA_rescaled.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA_rescaled.c Translating double_exp_AMPA_NMDA_rescaled_prox.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA_rescaled_prox.c Thread Safe Translating double_exp_AMPA_NMDA_v_from_vector.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/double_exp_AMPA_NMDA_v_from_vector.c Thread Safe -> NMODL ../mech//epsc_double_exp.mod -> NMODL ../mech//exp_AMPA_NMDA.mod Thread Safe -> NMODL ../mech//gap.mod -> NMODL ../mech//rel.mod Translating epsc_double_exp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/epsc_double_exp.c Translating exp_AMPA_NMDA.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/exp_AMPA_NMDA.c Thread Safe Thread Safe Translating gap.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/gap.c Notice: Use of POINTER is not thread safe. Translating rel.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/rel.c -> NMODL ../mech//release_BMK.mod -> Compiling CaDyn.c Thread Safe -> Compiling CaPump.c -> Compiling IKv3_1.c Translating release_BMK.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/ppc64le/release_BMK.c Thread Safe -> Compiling INa_Ta.c In file included from /usr/include/section.h:37, from CaDyn.c:11: CaDyn.c:42:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 42 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ In file included from /usr/include/section.h:37, from CaPump.c:11: CaPump.c:42:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 42 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ make: *** [makemod2c_inc:7: CaDyn.o] Error 1 make: *** Waiting for unfinished jobs.... In file included from /usr/include/section.h:37, from IKv3_1.c:11: IKv3_1.c:43:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 43 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ make: *** [makemod2c_inc:15: CaPump.o] Error 1 IKv3_1.c: In function ‘_hoc_rates’: IKv3_1.c:284:37: error: too many arguments to function ‘hoc_getarg’; expected 0, have 1 284 | rates ( _p, _ppvar, _thread, _nt, *getarg(1) ); | ^~~~~~ IKv3_1.c:43:25: note: declared here 43 | extern double *getarg(); | ^~~~~~ make: *** [makemod2c_inc:23: IKv3_1.o] Error 1 In file included from /usr/include/section.h:37, from INa_Ta.c:11: INa_Ta.c:43:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 43 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ INa_Ta.c: In function ‘_hoc_rates’: INa_Ta.c:302:37: error: too many arguments to function ‘hoc_getarg’; expected 0, have 1 302 | rates ( _p, _ppvar, _thread, _nt, *getarg(1) ); | ^~~~~~ INa_Ta.c:43:25: note: declared here 43 | extern double *getarg(); | ^~~~~~ make: *** [makemod2c_inc:31: INa_Ta.o] Error 1 --- writing channels from /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/ to /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech/ Reading channels from: __init__ Reading channels from: channelcollection - write .mod file for: Kv3_1 - write .mod file for: Na_Ta - write .mod file for: SK - write .mod file for: TestChannel - write .mod file for: TestChannel2 - write .mod file for: h + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=8 + /usr/bin/pytest ../ ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 configfile: pyproject.toml collected 80 items ../tests/test_cnet.py ....F [ 6%] ../tests/test_compartmentfitter.py ..FFF.F.F. [ 18%] ../tests/test_compartmenttree.py ......... [ 30%] ../tests/test_greenstree.py .. [ 32%] ../tests/test_ionchannels.py .... [ 37%] ../tests/test_morphtree.py .................. [ 60%] ../tests/test_net.py ..... [ 66%] ../tests/test_neurontree.py .FF.... [ 75%] ../tests/test_phystree.py .... [ 80%] ../tests/test_sovtree.py ... [ 83%] ../tests/test_stree.py ............. [100%] =================================== FAILURES =================================== _____________________________ TestCNET.testChannel _____________________________ self = def testChannel(self): > self.createPointNeurons() ../tests/test_cnet.py:522: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_cnet.py:50: in createPointNeurons self.sim_tree.initModel(dt=self.dt) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 1.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ___________________ TestCompartmentFitter.testChannelFitMats ___________________ self = def testChannelFitMats(self): self.loadBall() cm = CompartmentFitter(self.tree) > cm.setCTree([(1,.5)]) ../tests/test_compartmentfitter.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError _____________________ TestCompartmentFitter.testPassiveFit _____________________ self = def testPassiveFit(self): self.loadTTree() fit_locs = [(1,.5), (4,1.), (5,.5), (8,.5)] # fit a tree directly from CompartmentTree greens_tree = self.tree.__copy__(new_tree=GreensTree()) greens_tree.setCompTree() freqs = np.array([0.]) greens_tree.setImpedance(freqs) z_mat = greens_tree.calcImpedanceMatrix(fit_locs)[0].real ctree = greens_tree.createCompartmentTree(fit_locs) ctree.computeGMC(z_mat) sov_tree = self.tree.__copy__(new_tree=SOVTree()) sov_tree.calcSOVEquations() alphas, phimat = sov_tree.getImportantModes(locarg=fit_locs) ctree.computeC(-alphas[0:1].real*1e3, phimat[0:1,:].real) # fit a tree with compartment fitter cm = CompartmentFitter(self.tree) cm.setCTree(fit_locs) cm.fitPassive() cm.fitCapacitance() cm.fitEEq() # check whether both trees are the same self._checkPasCondProps(ctree, cm.ctree) self._checkPasCaProps(ctree, cm.ctree) self._checkEL(cm.ctree, -75.) # test whether all channels are used correctly for passive fit self.loadBall() fit_locs = [(1,.5)] # fit ball model with only leak greens_tree = self.tree.__copy__(new_tree=GreensTree()) greens_tree.channel_storage = {} for n in greens_tree: n.currents = {'L': n.currents['L']} greens_tree.setCompTree() freqs = np.array([0.]) greens_tree.setImpedance(freqs) z_mat = greens_tree.calcImpedanceMatrix(fit_locs)[0].real ctree_leak = greens_tree.createCompartmentTree(fit_locs) ctree_leak.computeGMC(z_mat) sov_tree = greens_tree.__copy__(new_tree=SOVTree()) sov_tree.calcSOVEquations() alphas, phimat = sov_tree.getImportantModes(locarg=fit_locs) ctree_leak.computeC(-alphas[0:1].real*1e3, phimat[0:1,:].real) # make ball model with leak based on all channels tree = self.tree.__copy__() tree.asPassiveMembrane() tree.setCompTree() greens_tree = tree.__copy__(new_tree=GreensTree()) greens_tree.setCompTree() freqs = np.array([0.]) greens_tree.setImpedance(freqs) z_mat = greens_tree.calcImpedanceMatrix(fit_locs)[0].real ctree_all = greens_tree.createCompartmentTree(fit_locs) ctree_all.computeGMC(z_mat) sov_tree = tree.__copy__(new_tree=SOVTree()) sov_tree.setCompTree() sov_tree.calcSOVEquations() alphas, phimat = sov_tree.getImportantModes(locarg=fit_locs) ctree_all.computeC(-alphas[0:1].real*1e3, phimat[0:1,:].real) # new compartment fitter cm = CompartmentFitter(self.tree) > cm.setCTree(fit_locs) ../tests/test_compartmentfitter.py:329: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError _______________ TestCompartmentFitter.testRecalcImpedanceMatrix ________________ self = g_inp = array([0. , 0.00052632, 0.00105263, 0.00157895, 0.00210526, 0.00263158, 0.00315789, 0.00368421, 0.004210...16, 0.00578947, 0.00631579, 0.00684211, 0.00736842, 0.00789474, 0.00842105, 0.00894737, 0.00947368, 0.01 ]) def testRecalcImpedanceMatrix(self, g_inp=np.linspace(0.,0.01, 20)): self.loadBall() fit_locs = [(1,.5)] cm = CompartmentFitter(self.tree) > cm.setCTree(fit_locs) ../tests/test_compartmentfitter.py:353: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ______________________ TestCompartmentFitter.testFitModel ______________________ self = def testFitModel(self): self.loadTTree() fit_locs = [(1,.5), (4,1.), (5,.5), (8,.5)] # fit a tree directly from CompartmentTree greens_tree = self.tree.__copy__(new_tree=GreensTree()) greens_tree.setCompTree() freqs = np.array([0.]) greens_tree.setImpedance(freqs) z_mat = greens_tree.calcImpedanceMatrix(fit_locs)[0] ctree = greens_tree.createCompartmentTree(fit_locs) ctree.computeGMC(z_mat) sov_tree = self.tree.__copy__(new_tree=SOVTree()) sov_tree.calcSOVEquations() alphas, phimat = sov_tree.getImportantModes(locarg=fit_locs) ctree.computeC(-alphas[0:1].real*1e3, phimat[0:1,:].real) # fit a tree with compartmentfitter cm = CompartmentFitter(self.tree) ctree_cm = cm.fitModel(fit_locs) # compare the two trees self._checkPasCondProps(ctree_cm, ctree) self._checkPasCaProps(ctree_cm, ctree) self._checkEL(ctree_cm, -75.) # check active channel self.fitBall() locs = [(1, 0.5)] cm = CompartmentFitter(self.tree) > ctree_cm_1 = cm.fitModel(locs, parallel=False, use_all_channels_for_passive=False) ../tests/test_compartmentfitter.py:522: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1134: in fitModel self.setCTree(loc_arg) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ______________________ TestCompartmentFitter.testParallel ______________________ self = w_benchmark = False def testParallel(self, w_benchmark=False): self.loadTSegmentTree() locs = [(nn.index,0.5) for nn in self.tree.nodes[:30]] cm = CompartmentFitter(self.tree) > ctree_cm = cm.fitModel(locs, parallel=False, use_all_channels_for_passive=True) ../tests/test_compartmentfitter.py:561: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1134: in fitModel self.setCTree(loc_arg) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ____________________________ TestNeuron.testActive _____________________________ self = , pplot = False def testActive(self, pplot=False): self.loadTTreeActive() # set of locations locs = [(1, .5), (4, .5), (6, .5), (7, .5), (8, .5)] # compute impedance matrix with Green's function zf_mat_gf = self.greenstree.calcImpedanceMatrix(locs) z_mat_gf = zf_mat_gf[self.ft.ind_0s].real # convert impedance matrix to time domain zk_mat_gf = np.zeros((len(self.ft.t), len(locs), len(locs))) for (ii, jj) in itertools.product(list(range(len(locs))), list(range(len(locs)))): zk_mat_gf[:,ii,jj] = self.ft.ftInv(zf_mat_gf[:,ii,jj])[1].real * 1e-3 # test the steady state impedance matrix > z_mat_neuron = self.neurontree.calcImpedanceMatrix(locs, t_dur=500.) ../tests/test_neurontree.py:180: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:837: in calcImpedanceMatrix self.initModel(dt=self.dt, t_calibrate=self.t_calibrate, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 25.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError _______________________ TestNeuron.testChannelRecording ________________________ self = def testChannelRecording(self): self.loadTTreeTestChannel() # set of locations locs = [(1, .5), (4, .5), (4, 1.), (5, .5), (6, .5), (7, .5), (8, .5)] # create simulation tree > self.neurontree.initModel(t_calibrate=10., factor_lambda=10.) ../tests/test_neurontree.py:204: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError =============================== warnings summary =============================== tests/test_compartmentfitter.py: 24 warnings tests/test_neurontree.py: 188 warnings /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:763: DeprecationWarning: neuron.run(tstop) is deprecated; use h.stdinit() and h.continuerun(tstop) instead neuron.run(t_max + self.t_calibrate) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../tests/test_cnet.py::TestCNET::testChannel - ValueError: argument no... FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testChannelFitMats FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testPassiveFit FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testRecalcImpedanceMatrix FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testFitModel FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testParallel FAILED ../tests/test_neurontree.py::TestNeuron::testActive - ValueError: argu... FAILED ../tests/test_neurontree.py::TestNeuron::testChannelRecording - ValueE... ================= 8 failed, 72 passed, 212 warnings in 45.42s ================== RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.f9SfwA (%check) Bad exit status from /var/tmp/rpm-tmp.f9SfwA (%check) Child return code was: 1 EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M d1743a1a5c4c4a35986d91e1fd24e9ae -D /var/lib/mock/f42-build-56955599-6547237/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"\' \'--setenv=PS1= \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/python-neatdend.spec\'\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) File "/usr/lib/python3.13/site-packages/mockbuild/util.py", line 610, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # /usr/bin/systemd-nspawn -q -M d1743a1a5c4c4a35986d91e1fd24e9ae -D /var/lib/mock/f42-build-56955599-6547237/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.hjlzyu3w:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target ppc64le /builddir/build/SPECS/python-neatdend.spec'