Mock Version: 1.4.19
Mock Version: 1.4.19
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-msm.spec'], chrootPath='/var/lib/mock/f31-build-18275293-1303391/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fa38acb6f90>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-msm.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1574294400
Wrote: /builddir/build/SRPMS/R-msm-1.6.6-6.fc31.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-msm.spec'], chrootPath='/var/lib/mock/f31-build-18275293-1303391/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fa38acb6f90>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-msm.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1574294400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.nnLIJT
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf msm
+ /usr/bin/mkdir -p msm
+ cd msm
+ /usr/bin/gzip -dc /builddir/build/SOURCES/msm_1.6.6.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find . -type f -name '*.[hc]' -exec chmod 644 '{}' ';'
+ chmod 644 msm/inst/NEWS
+ iconv -f ISO88591 -t UTF8 -o NEWS msm/inst/NEWS
+ mv -f NEWS msm/inst
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.xUmf8T
+ umask 022
+ cd /builddir/build/BUILD
+ cd msm
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.mj7LKT
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64
++ dirname /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64
+ cd msm
+ mkdir -p /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library msm
* installing *source* package 'msm' ...
file 'inst/NEWS' has the wrong MD5 checksum
** using staged installation
** libs
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c analyticp.c -o analyticp.o
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c hmm.c -o hmm.o
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c hmmderiv.c -o hmmderiv.o
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lik.c -o lik.o
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c msm-init.c -o msm-init.o
gcc -m64 -I"/usr/include/R" -DNDEBUG   -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pijt.c -o pijt.o
gcc -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o msm.so analyticp.o hmm.o hmmderiv.o lik.o msm-init.o pijt.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library/00LOCK-msm/00new/msm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'msm'
    finding HTML links ... done
    2phase                                  html  
    MatrixExp                               html  
    aneur                                   html  
    boot.msm                                html  
    bos                                     html  
    cav                                     html  
    cmodel.object                           html  
    coef.msm                                html  
    crudeinits.msm                          html  
    deltamethod                             html  
    draic.msm                               html  
    ecmodel.object                          html  
    efpt.msm                                html  
    ematrix.msm                             html  
    emodel.object                           html  
    fev                                     html  
    hazard.msm                              html  
    hmm-dists                               html  
    hmmMV                                   html  
    hmodel.object                           html  
    logLik.msm                              html  
    lrtest.msm                              html  
    medists                                 html  
    model.frame.msm                         html  
    msm                                     html  
    msm.form.qoutput                        html  
    msm.object                              html  
    msm2Surv                                html  
    odds.msm                                html  
    paramdata.object                        html  
    pearson.msm                             html  
    pexp                                    html  
    phasemeans.msm                          html  
    plot.msm                                html  
    plot.prevalence.msm                     html  
    plot.survfit.msm                        html  
    plotprog.msm                            html  
    pmatrix.msm                             html  
    pmatrix.piecewise.msm                   html  
    pnext.msm                               html  
    ppass.msm                               html  
    prevalence.msm                          html  
    print.msm                               html  
    printold.msm                            html  
    psor                                    html  
    qcmodel.object                          html  
    qgeneric                                html  
    qmatrix.msm                             html  
    qmodel.object                           html  
    qratio.msm                              html  
    recreate.olddata                        html  
    scoreresid.msm                          html  
    sim.msm                                 html  
    simfitted.msm                           html  
    simmulti.msm                            html  
    sojourn.msm                             html  
    statetable.msm                          html  
    summary.msm                             html  
    surface.msm                             html  
    tnorm                                   html  
    totlos.msm                              html  
    transient.msm                           html  
    updatepars.msm                          html  
    viterbi.msm                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (msm)
+ test -d msm/src
+ cd msm/src
+ rm -f analyticp.o hmm.o hmmderiv.o lik.o msm-init.o pijt.o msm.so
+ rm -rf /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.6.6-6.fc31 --unique-debug-suffix -1.6.6-6.fc31.x86_64 --unique-debug-src-base R-msm-1.6.6-6.fc31.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/msm
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library/msm/libs/msm.so
extracting debug info from /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64/usr/lib64/R/library/msm/libs/msm.so
original debug info size: 292kB, size after compression: 284kB
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
279 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib64/R/library/msm/CITATION is executable but has empty or no shebang, removing executable bit
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.5Yg9hV
+ umask 022
+ cd /builddir/build/BUILD
+ cd msm
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-msm-1.6.6-6.fc31.x86_64
Provides: R(msm) = 1.6.6 R-msm = 1.6.6-6.fc31 R-msm(x86-64) = 1.6.6-6.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(expm) R(mvtnorm) R(survival) R-core libR.so()(64bit) libRblas.so()(64bit) libRlapack.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Suggests: R(doParallel) R(foreach) R(testthat)
Processing files: R-msm-debugsource-1.6.6-6.fc31.x86_64
Provides: R-msm-debugsource = 1.6.6-6.fc31 R-msm-debugsource(x86-64) = 1.6.6-6.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-msm-debuginfo-1.6.6-6.fc31.x86_64
Provides: R-msm-debuginfo = 1.6.6-6.fc31 R-msm-debuginfo(x86-64) = 1.6.6-6.fc31 debuginfo(build-id) = 61b605a2df578e777b93231efb60d7b011973bab
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-msm-debugsource(x86-64) = 1.6.6-6.fc31
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64
Wrote: /builddir/build/RPMS/R-msm-debuginfo-1.6.6-6.fc31.x86_64.rpm
Wrote: /builddir/build/RPMS/R-msm-debugsource-1.6.6-6.fc31.x86_64.rpm
Wrote: /builddir/build/RPMS/R-msm-1.6.6-6.fc31.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2buL2R
+ umask 022
+ cd /builddir/build/BUILD
+ cd msm
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-msm-1.6.6-6.fc31.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0