Mock Version: 1.2.21 Mock Version: 1.2.21 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/rdkit.spec'], user='mockbuild'env={'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'PS1': ' \\s-\\v\\$ ', 'TERM': 'vt100', 'SHELL': '/bin/bash'}logger=printOutput=Falseshell=Falsetimeout=172800gid=425chrootPath='/var/lib/mock/f24-build-6751588-663273/root'uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'PS1': ' \\s-\\v\\$ ', 'TERM': 'vt100', 'SHELL': '/bin/bash'} and shell False warning: Could not canonicalize hostname: arm02-builder16.arm.fedoraproject.org Building target platforms: armv7hl Building for target armv7hl Wrote: /builddir/build/SRPMS/rdkit-2016.03.5-1.fc24.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/rdkit.spec'], user='mockbuild'private_network=Truegid=425logger=printOutput=Falseshell=Falsetimeout=172800env={'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'PS1': ' \\s-\\v\\$ ', 'TERM': 'vt100', 'SHELL': '/bin/bash'}chrootPath='/var/lib/mock/f24-build-6751588-663273/root'uid=1000) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'HOSTNAME': 'mock', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'LANG': 'en_US.UTF-8', 'PS1': ' \\s-\\v\\$ ', 'TERM': 'vt100', 'SHELL': '/bin/bash'} and shell False Building target platforms: armv7hl Building for target armv7hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HwSgxj + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rdkit-Release_2016_03_5 + /usr/bin/mkdir -p rdkit-Release_2016_03_5 + cd rdkit-Release_2016_03_5 + /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2016_03_5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + mv rdkit-Release_2016_03_5 python2 + pushd python2 ~/build/BUILD/rdkit-Release_2016_03_5/python2 ~/build/BUILD/rdkit-Release_2016_03_5 Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch): + echo 'Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):' + /usr/bin/patch -p1 --fuzz=0 patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py Hunk #1 succeeded at 113 (offset 15 lines). + echo 'Patch #2 (rdkit-2014.09-do_not_install_sping.patch):' Patch #2 (rdkit-2014.09-do_not_install_sping.patch): + /usr/bin/patch -p1 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 171 (offset 22 lines). + echo 'Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):' Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch): + /usr/bin/patch -p1 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 95 (offset 14 lines). Hunk #2 succeeded at 109 (offset 14 lines). + echo 'Patch #7 (rdkit-2015.03-dont_install_contrib.patch):' Patch #7 (rdkit-2015.03-dont_install_contrib.patch): + /usr/bin/patch -p1 --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 297 (offset 65 lines). + echo 'Patch #10 (rdkit-verbose_failure.patch):' Patch #10 (rdkit-verbose_failure.patch): + /usr/bin/patch -p1 --fuzz=0 patching file rdkit/TestRunner.py + echo 'Patch #11 (rdkit-2016.03-add_moldraw_headers.patch):' Patch #11 (rdkit-2016.03-add_moldraw_headers.patch): + /usr/bin/patch -p1 --fuzz=0 patching file Code/GraphMol/MolDraw2D/CMakeLists.txt + rm -rf rdkit/sping + cp -pr license.txt ReleaseNotes.md ../ + popd ~/build/BUILD/rdkit-Release_2016_03_5 + cp -a python2 python3 + find python3 -name '*.py' + xargs sed -i '1s|^#!.*|#!/usr/bin/python3|' + find python2 -name '*.py' + xargs sed -i '1s|^#!.*|#!/usr/bin/python2|' + find python3 -name test_list.py + xargs sed -i 's/"python"/"python3"/g' + find python3 -name test_list.py + xargs sed -i 's/'\''python'\''/'\''python3'\''/g' + sed -i.orig s/python/python3/g python3/Projects/DbCLI/TestDbCLI.py + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.eUAyTy + umask 022 + cd /builddir/build/BUILD + cd rdkit-Release_2016_03_5 + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed' + pushd python2 ~/build/BUILD/rdkit-Release_2016_03_5/python2 ~/build/BUILD/rdkit-Release_2016_03_5 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -D RDK_OPTIMIZE_NATIVE:BOOL=OFF . -- The C compiler identification is GNU 6.2.1 -- The CXX compiler identification is GNU 6.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found INCHI: /usr/lib/libinchi.so -- Found PythonInterp: /usr/bin/python2 (found version "2.7.12") -- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.12") -- Boost version: 1.60.0 -- Found the following Boost libraries: -- python Python Install directory /usr/lib/python2.7/site-packages -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.60.0 -- Found the following Boost libraries: -- thread -- system -- chrono -- date_time -- atomic -- Boost version: 1.60.0 -- Found the following Boost libraries: -- serialization -- Found PostgreSQL: /usr/lib/libpq.so (found version "9.5.4") == Using strict rotor definition -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex == Updating Filters.cpp from pains file == Done updating pains files -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for one of the modules 'cairo' -- Boost version: 1.60.0 -- Found the following Boost libraries: -- regex CMake Warning (dev) at Code/PgSQL/rdkit/CMakeLists.txt:64 (link_directories): This command specifies the relative path lib as a link directory. Policy CMP0015 is not set: link_directories() treats paths relative to the source dir. Run "cmake --help-policy CMP0015" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. ===================================================================== After building, check /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/PgSQL/rdkit/pgsql_install.sh for correctness of installation paths. If everything is OK, gain administrator privileges, stop the PostgreSQL service, run /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/PgSQL/rdkit/pgsql_install.sh to install the PostgreSQL RDKit cartridge, then start again the PostgreSQL service ===================================================================== -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 + make -j4 /usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2016_03_5/python2 -B/builddir/build/BUILD/rdkit-Release_2016_03_5/python2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target hc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build Scanning dependencies of target ChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build Scanning dependencies of target RDGeneral Scanning dependencies of target inchi_support make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/rdkit/Chem/inchi.py [ 0%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.cpp [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hc.c.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/hc.c make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.cpp [ 0%] Built target inchi_support [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.cpp [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hcdriver.c.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/hcdriver.c [ 1%] Linking C shared library ../../../../lib/libhc.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libhc.so.1 -o ../../../../lib/libhc.so.1.2016.03.5 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libhc.so.1.2016.03.5 ../../../../lib/libhc.so.1 ../../../../lib/libhc.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 1%] Built target hc [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Dict.cpp cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/LocaleSwitcher.cpp cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.cpp [ 1%] Linking CXX shared library ../../lib/libChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libChemicalFeatures.so.1 -o ../../lib/libChemicalFeatures.so.1.2016.03.5 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libChemicalFeatures.so.1.2016.03.5 ../../lib/libChemicalFeatures.so.1 ../../lib/libChemicalFeatures.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 1%] Built target ChemicalFeatures [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/versions.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 2%] Linking CXX shared library ../../lib/libRDGeneral.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDGeneral.so.1 -o ../../lib/libRDGeneral.so.1.2016.03.5 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeneral.so.1.2016.03.5 ../../lib/libRDGeneral.so.1 ../../lib/libRDGeneral.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 2%] Built target RDGeneral make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= Scanning dependencies of target RDBoost make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build Scanning dependencies of target testDict make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' Scanning dependencies of target testMatrices make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' Scanning dependencies of target DataStructs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDict.dir/testDict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/testDict.cpp [ 2%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp [ 2%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/testMatrices.cpp [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitVect.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/testDict.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/testDict.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/testDict.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/testMatrices.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/testMatrices.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/testMatrices.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitVect.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitVect.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitVect.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/SparseBitVect.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/SparseBitVect.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/SparseBitVect.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/SparseBitVect.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.cpp:16: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 3%] Linking CXX executable testMatrices cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Built target testMatrices make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= Scanning dependencies of target EigenSolvers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 3%] Linking CXX executable testDict cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 [ 3%] Linking CXX shared library ../../lib/libRDBoost.so /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testDict.dir/testDict.cpp.o -o testDict -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDBoost.so.1 -o ../../lib/libRDBoost.so.1.2016.03.5 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/ExplicitBitVect.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Built target testDict make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDBoost.so.1.2016.03.5 ../../lib/libRDBoost.so.1 ../../lib/libRDBoost.so Scanning dependencies of target Catalogs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.cpp [ 3%] Built target RDBoost make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target testQuery make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/test.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Vector.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Vector.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Vector.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/ExplicitBitVect.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/ExplicitBitVect.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/ExplicitBitVect.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/test.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/test.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/test.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.h:27, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.h:27, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.h:27, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/Catalog.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 3%] Linking CXX shared library ../../../lib/libEigenSolvers.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libEigenSolvers.so.1 -o ../../../lib/libEigenSolvers.so.1.2016.03.5 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1 ../../../lib/libEigenSolvers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 3%] Built target EigenSolvers make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= Scanning dependencies of target testMatCalc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 4%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o [ 4%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/CatalogParams.cpp [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Utils.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs/CatalogEntry.cpp [ 5%] Linking CXX shared library ../../lib/libCatalogs.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libCatalogs.so.1 -o ../../lib/libCatalogs.so.1.2016.03.5 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libCatalogs.so.1.2016.03.5 ../../lib/libCatalogs.so.1 ../../lib/libCatalogs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 5%] Built target Catalogs make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 5%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/MetricFuncs.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/MetricFuncs.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/MetricFuncs.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Utils.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Utils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Utils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 5%] Linking CXX executable testMatCalc cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc -rdynamic ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 5%] Built target testMatCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/base64.cpp [ 5%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitOps.cpp In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/DistPicker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 6%] Linking CXX executable testQuery cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testQuery.dir/test.cpp.o -o testQuery -rdynamic ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 6%] Built target testQuery make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 6%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitOps.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitOps.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/BitOps.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/MaxMinPicker.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/FreeChemicalFeature.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 6%] Linking CXX executable testChemicalFeatures cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures -rdynamic ../../lib/libChemicalFeatures.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 6%] Built target testChemicalFeatures make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ [ 6%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh/Clustering.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/DiscreteDistMat.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/DiscreteValueVect.cpp [ 6%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libhc.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 6%] Built target Clustering [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/FPBReader.cpp [ 7%] Linking CXX shared library ../../lib/libSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSimDivPickers.so.1 -o ../../lib/libSimDivPickers.so.1.2016.03.5 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libhc.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libSimDivPickers.so.1.2016.03.5 ../../lib/libSimDivPickers.so.1 ../../lib/libSimDivPickers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 7%] Built target SimDivPickers In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/DiscreteValueVect.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/DiscreteValueVect.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/DiscreteValueVect.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/FPBReader.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/FPBReader.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/FPBReader.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap/RDBase.cpp:15:0: /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()': /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate] " returning."); ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept [ 7%] Linking CXX shared library ../../lib/libDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libDataStructs.so.1 -o ../../lib/libDataStructs.so.1.2016.03.5 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libDataStructs.so.1 ../../lib/libDataStructs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 7%] Built target DataStructs make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= Scanning dependencies of target testFPB Scanning dependencies of target testDataStructs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build Scanning dependencies of target RDGeometryLib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 7%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o [ 7%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testFPB.cpp cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testDatastructs.cpp [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testFPB.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testFPB.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testFPB.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testDatastructs.cpp:22: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testDatastructs.cpp:22: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/testDatastructs.cpp:22: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform2D.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform2D.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform2D.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform2D.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 7%] Linking CXX executable testFPB cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB -rdynamic ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 7%] Built target testFPB make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= Scanning dependencies of target cDataStructs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 7%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.cpp In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:13: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:13: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:13: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:13: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DataStructs.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp [ 8%] Linking CXX executable testDataStructs cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs -rdynamic ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Built target testDataStructs make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= Scanning dependencies of target rdMetricMatrixCalc make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 8%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/GridUtils.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/GridUtils.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/GridUtils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/GridUtils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 8%] Linking CXX shared library ../../lib/libRDGeometryLib.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDGeometryLib.so.1 -o ../../lib/libRDGeometryLib.so.1.2016.03.5 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1 ../../lib/libRDGeometryLib.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Built target RDGeometryLib make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target rdSimDivPickers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 8%] Linking CXX shared module ../../../rdkit/rdBase.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: [ 8%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Built target rdBase make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target InfoTheory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.cpp [ 8%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Built target rdMetricMatrixCalc make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 8%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/InfoBitRanker.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 9%] Linking CXX shared library ../../../lib/libInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libInfoTheory.so.1 -o ../../../lib/libInfoTheory.so.1.2016.03.5 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libInfoTheory.so.1 ../../../lib/libInfoTheory.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 9%] Built target InfoTheory [ 10%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/SparseIntVect.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.h:23, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.h:23, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Atom.h:23, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryAtom.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 11%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.cpp [ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryBond.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/Query.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Query/QueryObjects.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Bond.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:13: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 11%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.cpp [ 11%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FindRings.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FindRings.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FindRings.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FindRings.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 11%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libSimDivPickers.so.1.2016.03.5 ../../../lib/libhc.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 11%] Built target rdSimDivPickers make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 11%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testTransforms.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testTransforms.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testTransforms.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testTransforms.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 11%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.cpp [ 12%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.cpp [ 13%] Linking CXX executable testTransforms cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms -rdynamic ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 13%] Built target testTransforms make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 13%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testGrid.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testGrid.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testGrid.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/UniformGrid3D.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/testGrid.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 15%] Linking CXX executable testGrid cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid -rdynamic ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 15%] Built target testGrid [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.cpp [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.h:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.h:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.h:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/atomic_data.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolPickler.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/QueryOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolPickler.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolPickler.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolPickler.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Canon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_FPB.cpp:10: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Canon.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Canon.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Canon.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AtomIterators.cpp [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AtomIterators.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AtomIterators.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AtomIterators.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap/wrap_Utils.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/Point.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Aromaticity.cpp [ 17%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/BondIterators.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 17%] Built target cDataStructs make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 17%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Aromaticity.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Aromaticity.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Aromaticity.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Kekulize.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Kekulize.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Kekulize.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Kekulize.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 17%] Linking CXX shared library ../../../lib/libAlignment.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libAlignment.so.1 -o ../../../lib/libAlignment.so.1.2016.03.5 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libAlignment.so.1 ../../../lib/libAlignment.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 17%] Built target Alignment make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/LinearSearch.cpp [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolDiscriminators.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/LinearSearch.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/LinearSearch.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/BFGSOpt.h:11, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/LinearSearch.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 18%] Linking CXX shared library ../../../lib/libOptimizer.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libOptimizer.so.1 -o ../../../lib/libOptimizer.so.1.2016.03.5 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libOptimizer.so.1 ../../../lib/libOptimizer.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 18%] Built target Optimizer make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target rdInfoTheory make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 19%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolDiscriminators.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolDiscriminators.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolOps.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolDiscriminators.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ConjugHybrid.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AddHs.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ConjugHybrid.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ConjugHybrid.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ConjugHybrid.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AddHs.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AddHs.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AddHs.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/UniformGrid3D.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Matrices.cpp [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Matrices.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Matrices.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Matrices.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Chirality.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RingInfo.cpp In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RingInfo.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RingInfo.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RingInfo.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Chirality.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Chirality.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Chirality.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap/rdGeometry.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 20%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 20%] Built target rdGeometry make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ Scanning dependencies of target cQuantize make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Conformer.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 21%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Renumber.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AdjustQuery.cpp In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Renumber.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Renumber.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Renumber.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data/cQuantize.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ [ 22%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libInfoTheory.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 22%] Built target rdInfoTheory make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 22%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/testAlignment.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AdjustQuery.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AdjustQuery.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/AdjustQuery.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 22%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Resonance.cpp make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 22%] Built target cQuantize make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 22%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/testAlignment.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/testAlignment.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/AlignPoints.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/testAlignment.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Resonance.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Resonance.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Resonance.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 23%] Linking CXX executable testAlignment cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment -rdynamic ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/new_canon.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 23%] Built target testAlignment make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 23%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/testOptimizer.cpp In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/testOptimizer.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/testOptimizer.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer/testOptimizer.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/PySequenceHolder.h:17, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 23%] Linking CXX executable testOptimizer cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer -rdynamic ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 23%] Built target testOptimizer make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.cpp [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 23%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 23%] Built target rdAlignment [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/BondStretch.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 24%] Linking CXX shared library ../../lib/libGraphMol.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libGraphMol.so.1 -o ../../lib/libGraphMol.so.1.2016.03.5 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libGraphMol.so.1 ../../lib/libGraphMol.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 24%] Built target GraphMol make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 24%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Nonbonded.cpp [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.cpp [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Nonbonded.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Nonbonded.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Nonbonded.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Inversion.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/DistanceConstraint.cpp [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleConstraint.cpp [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionConstraint.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleBend.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionConstraint.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionAngle.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/TorsionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Params.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 25%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Params.cpp:19: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Params.cpp:19: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/UFF/Params.cpp:19: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/BondStretch.cpp [ 27%] Linking CXX shared library ../../../lib/libPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libPartialCharges.so.1 -o ../../../lib/libPartialCharges.so.1.2016.03.5 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1 ../../../lib/libPartialCharges.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 27%] Built target PartialCharges make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructMatch make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 27%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructMatch.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/BondStretch.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/StretchBend.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructMatch.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructMatch.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructMatch.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.cpp [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionAngle.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/StretchBend.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/StretchBend.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/StretchBend.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/OopBend.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionAngle.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionAngle.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionAngle.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/DistanceConstraint.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleConstraint.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Nonbonded.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/DistanceConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleBend.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/AngleConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionConstraint.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.cpp [ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.cpp [ 28%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructUtils.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionConstraint.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/TorsionConstraint.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/PositionConstraint.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.cpp:17: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/MMFF/Params.cpp:17: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructUtils.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructUtils.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct/SubstructUtils.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 29%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.cpp [ 29%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/RDDepictor.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 30%] Linking CXX shared library ../../../lib/libSubstructMatch.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSubstructMatch.so.1 -o ../../../lib/libSubstructMatch.so.1.2016.03.5 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1 ../../../lib/libSubstructMatch.so In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 30%] Built target SubstructMatch make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 30%] [FLEX][SmartsL] Building scanner with flex 2.6.0 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll [ 30%] [BISON][SmilesY] Building parser with bison 3.0.4 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy [ 30%] [BISON][SmartsY] Building parser with bison 3.0.4 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy smarts.yy: warning: 81 shift/reduce conflicts [-Wconflicts-sr] [ 30%] [FLEX][SmilesL] Building scanner with flex 2.6.0 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= Scanning dependencies of target SmilesParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 32%] Linking CXX shared library ../../lib/libForceField.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libForceField.so.1 -o ../../lib/libForceField.so.1.2016.03.5 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libForceField.so.1.2016.03.5 ../../lib/libForceField.so.1 ../../lib/libForceField.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 32%] Built target ForceField make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= Scanning dependencies of target Subgraphs make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 32%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/boost-numeric-bindings -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 32%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/DepictUtils.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp:27: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp:27: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp:27: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/DepictUtils.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/DepictUtils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor/DepictUtils.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 33%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/boost-numeric-bindings -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 33%] Linking CXX shared library ../../../lib/libDepictor.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libDepictor.so.1 -o ../../../lib/libDepictor.so.1.2016.03.5 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDepictor.so.1 ../../../lib/libDepictor.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 33%] Built target Depictor make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/utils.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 33%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 33%] Linking CXX shared library ../../../lib/libSubgraphs.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSubgraphs.so.1 -o ../../../lib/libSubgraphs.so.1.2016.03.5 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1 ../../../lib/libSubgraphs.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 33%] Built target Subgraphs make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 34%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 34%] Linking CXX shared library ../../../lib/libMolTransforms.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libMolTransforms.so.1 -o ../../../lib/libMolTransforms.so.1.2016.03.5 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1 ../../../lib/libMolTransforms.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 34%] Built target MolTransforms [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smiles.yy:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smiles.yy:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smiles.yy:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:11: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, const char*)': smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] yysmiles_error( const char *input, ^~~~~ smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] std::list *branchPoints, ^~~~~~~~~~~~ smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter] void *scanner,const char * msg ) ^~~~~~~ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.yy:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.yy:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.yy:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ smarts.yy: In function 'void yysmarts_error(const char*, std::vector*, void*, const char*)': smarts.yy:25:29: warning: unused parameter 'input' [-Wunused-parameter] yysmarts_error( const char *input, ^~~~~ smarts.yy:26:46: warning: unused parameter 'ms' [-Wunused-parameter] std::vector *ms, ^~ smarts.yy:27:9: warning: unused parameter 'scanner' [-Wunused-parameter] void *scanner,const char * msg ) ^~~~~~~ [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp [ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 35%] Built target rdPartialCharges make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target MolCatalog make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from smiles.ll:20: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from smiles.ll:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from smiles.ll:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.ll:20: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.ll:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from smarts.ll:20: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'int yy_get_next_buffer(yyscan_t)': /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:810:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( n = 0; n < max_size && \ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:1689:3: note: in expansion of macro 'YY_INPUT' YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'int yy_get_next_buffer(yyscan_t)': /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:839:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( n = 0; n < max_size && \ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:1829:3: note: in expansion of macro 'YY_INPUT' YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), ^ make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 35%] [FLEX][SlnL] Building scanner with flex 2.6.0 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll [ 35%] [BISON][SlnY] Building parser with bison 3.0.4 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNParse.cpp [ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 36%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 36%] Linking CXX shared library ../../../lib/libSmilesParse.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSmilesParse.so.1 -o ../../../lib/libSmilesParse.so.1.2016.03.5 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp:8: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp:8: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1 ../../../lib/libSmilesParse.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 36%] Built target SmilesParse make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target rdqueries make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp [ 37%] Linking CXX shared library ../../../lib/libMolCatalog.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libMolCatalog.so.1 -o ../../../lib/libMolCatalog.so.1.2016.03.5 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolCatalog.so.1.2016.03.5 ../../../lib/libMolCatalog.so.1 ../../../lib/libMolCatalog.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Built target MolCatalog make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNParse.cpp:36: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNParse.cpp:36: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNParse.cpp:36: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ Scanning dependencies of target rdChemicalFeatures make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp:38: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp:38: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp:38: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/Wrap.h:19, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/rdqueries.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 37%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/sln.tab.cpp [ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/lex.yysln.cpp [ 37%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp sln.yy:54:0: warning: "YYDEBUG" redefined #define YYDEBUG 1 In file included from sln.yy:50:0: /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37:0: note: this is the location of the previous definition # define YYDEBUG 0 In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.ll:48: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.ll:48: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.ll:48: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.yy:44: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.yy:44: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from sln.yy:44: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'int yy_get_next_buffer(yyscan_t)': /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:942:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for ( n = 0; n < max_size && \ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:1993:3: note: in expansion of macro 'YY_INPUT' YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), ^ sln.yy: In function 'void yysln_error(const char*, std::vector*, bool, void*, const char*)': sln.yy:58:43: warning: unused parameter 'ms' [-Wunused-parameter] std::vector *ms,bool doQ, ^~ sln.yy:58:51: warning: unused parameter 'doQ' [-Wunused-parameter] std::vector *ms,bool doQ, ^~~ sln.yy:59:13: warning: unused parameter 'scanner' [-Wunused-parameter] void *scanner,const char * msg ) ^~~~~~~ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:15:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:12: /usr/include/boost/type_traits/detail/ice_or.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_or.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_or.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:16:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:12: /usr/include/boost/type_traits/detail/ice_and.hpp:18:72: note: #pragma message: NOTE: Use of this header (ice_and.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_and.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:17:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:12: /usr/include/boost/type_traits/detail/ice_not.hpp:17:72: note: #pragma message: NOTE: Use of this header (ice_not.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_not.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/ice.hpp:18:0, from /usr/include/boost/python/detail/def_helper.hpp:9, from /usr/include/boost/python/class.hpp:29, from /usr/include/boost/python.hpp:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDBoost/python.h:2, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:12: /usr/include/boost/type_traits/detail/ice_eq.hpp:17:71: note: #pragma message: NOTE: Use of this header (ice_eq.hpp) is deprecated # pragma message("NOTE: Use of this header (ice_eq.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:15: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap/Queries.cpp:15: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 37%] Linking CXX shared library ../../../lib/libSLNParse.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSLNParse.so.1 -o ../../../lib/libSLNParse.so.1.2016.03.5 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_regex ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSLNParse.so.1.2016.03.5 ../../../lib/libSLNParse.so.1 ../../../lib/libSLNParse.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Built target SLNParse make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= Scanning dependencies of target RDInchiLib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API && /usr/bin/c++ -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/inchi.cpp Scanning dependencies of target FileParsers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 37%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 38%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libChemicalFeatures.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 38%] Built target rdChemicalFeatures [ 38%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileParser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/inchi.cpp:58: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/inchi.cpp:58: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/PeriodicTable.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API/inchi.cpp:58: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileParser.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 38%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 38%] Built target rdqueries make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 38%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 38%] Linking CXX shared library ../../lib/libRDInchiLib.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libRDInchiLib.so.1 -o ../../lib/libRDInchiLib.so.1.2016.03.5 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -linchi ../../lib/libDepictor.so.1.2016.03.5 ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDInchiLib.so.1.2016.03.5 ../../lib/libRDInchiLib.so.1 ../../lib/libRDInchiLib.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 38%] Built target RDInchiLib [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 38%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 38%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp [ 39%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 39%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/point.h:22, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/ForceField/ForceField.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDWriter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 40%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDWriter.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SDWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/SquareMatrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/SquareMatrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/Matrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Numerics/SquareMatrix.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/Geometry/Transform3D.h:15, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/StreamOps.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 40%] Linking CXX shared library ../../../lib/libForceFieldHelpers.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libForceFieldHelpers.so.1 -o ../../../lib/libForceFieldHelpers.so.1.2016.03.5 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1 ../../../lib/libForceFieldHelpers.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 40%] Built target ForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/memtest1.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/memtest1.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/memtest1.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/memtest1.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20:0, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolWriters.h:14, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:16: /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()': /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:100:11: warning: throw will always call terminate() [-Wterminate] throw inv; \ ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT' CHECK_INVARIANT(dp_ostream, ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:100:11: note: in C++11 destructors default to noexcept throw inv; \ ^ /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT' CHECK_INVARIANT(dp_ostream, ^ [ 41%] Linking CXX executable graphmolMemTest1 cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 -rdynamic ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 41%] Built target graphmolMemTest1 make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/querytest.cpp [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileParser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/querytest.cpp:11: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/querytest.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/querytest.cpp:11: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileParser.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileParser.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileParser.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 42%] Linking CXX shared library ../../../lib/libMolAlign.so cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libMolAlign.so.1 -o ../../../lib/libMolAlign.so.1.2016.03.5 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib: cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libMolAlign.so.1 ../../../lib/libMolAlign.so make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 42%] Built target MolAlign [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBParser.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp:12: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp:12: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBParser.cpp:18: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBParser.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/FileParsers.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBParser.cpp:18: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBWriter.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:23: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:23: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBWriter.cpp:23: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 43%] Linking CXX executable graphmolqueryTest cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest -rdynamic ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/lib make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 43%] Built target graphmolqueryTest [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolSupplier.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp:13: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolSupplier.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/MolSupplier.h:13, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/PDBSupplier.cpp:13: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.h:12, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.h:12, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RWMol.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.h:12, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp:16: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/types.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/ROMol.h:31, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/GraphMol.h:18, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp:16: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' [ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,--as-needed -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/testCanon.cpp In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp:14: /usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated") ^ In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0, from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0, from /usr/include/boost/iostreams/detail/resolve.hpp:26, from /usr/include/boost/iostreams/detail/push.hpp:24, from /usr/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31, from /usr/include/boost/iostreams/stream_buffer.hpp:22, from /usr/include/boost/iostreams/stream.hpp:21, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/RDLog.h:16, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/RDGeneral/Invariant.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/RDKitBase.h:20, from /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp:14: /usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated") ^ make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' cd /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2 /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2016_03_5/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[2]: Leaving directory '/builddir/build/BUILD/rdkit-Release_2016_03_5/python2' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/