Mock Version: 1.3.4
Mock Version: 1.3.4
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/elph.spec'], chrootPath='/var/lib/mock/f29-build-13168859-959327/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fed341a8fd0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/elph.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
Wrote: /builddir/build/SRPMS/elph-1.0.1-21.fc29.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/elph.spec'], chrootPath='/var/lib/mock/f29-build-13168859-959327/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fed341a8fd0>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/elph.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.09AvOV
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf ELPH
+ /usr/bin/gzip -dc /builddir/build/SOURCES/ELPH-1.0.1.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ELPH
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (elph-chris.patch):
+ echo 'Patch #0 (elph-chris.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .chris --fuzz=0
patching file sources/elph.cc
patching file sources/GBase.h
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hNokzL
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ make -C sources -j6 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT'
make: Entering directory '/builddir/build/BUILD/ELPH/sources'
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT -c elph.cc -o elph.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT -c motif.cc -o motif.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GBase.cpp -o GBase.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GString.cpp -o GString.o
g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-exceptions -fno-rtti -D_REENTRANT -c GArgs.cpp -o GArgs.o
In file included from GBase.cpp:5:
GBase.h: In function 'void swap(bool&, bool&)':
GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
 { arg1 ^= arg2 ^= arg1 ^= arg2; }
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from GArgs.cpp:7:
GBase.h: In function 'void swap(bool&, bool&)':
GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
 { arg1 ^= arg2 ^= arg1 ^= arg2; }
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from GString.h:8,
                 from elph.cc:5:
GBase.h: In function 'void swap(bool&, bool&)':
GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
 { arg1 ^= arg2 ^= arg1 ^= arg2; }
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from elph.cc:5:
GString.h: At global scope:
GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trim(char* c=" \t\n\r");
                               ^~~~~~~~~
GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trimR(char* c=" \t\n\r"); //trim only right end
                                ^~~~~~~~~
GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trimL(char* c=" \t\n\r"); //trim only left end
                                ^~~~~~~~~
GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096);
                                                   ^~~~
elph.cc: In function 'int main(int, char**)':
elph.cc:81:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
   GArgs args(argc, argv, "ho:abreglvdzxt:p:s:m:n:LEN=ITERNO=MAXLOOP=SGFNO=");
                                                                            ^
elph.cc: In function 'seqType Process_Options(GArgs*)':
elph.cc:178:12: warning: ignoring return value of 'int scanf(const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       scanf("%d",&motiflen);
       ~~~~~^~~~~~~~~~~~~~~~
In file included from GFastaFile.h:3,
                 from motif.h:8,
                 from motif.cc:4:
GBase.h: In function 'void swap(bool&, bool&)':
GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
 { arg1 ^= arg2 ^= arg1 ^= arg2; }
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from GString.h:8,
                 from GString.cpp:2:
GBase.h: In function 'void swap(bool&, bool&)':
GBase.h:122:8: warning: operation on 'arg1' may be undefined [-Wsequence-point]
 { arg1 ^= arg2 ^= arg1 ^= arg2; }
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from GString.cpp:2:
GString.h: At global scope:
GString.h:128:31: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trim(char* c=" \t\n\r");
                               ^~~~~~~~~
GString.h:129:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trimR(char* c=" \t\n\r"); //trim only right end
                                ^~~~~~~~~
GString.h:131:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         GString& trimL(char* c=" \t\n\r"); //trim only left end
                                ^~~~~~~~~
GString.h:136:51: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         size_t read(FILE* stream, char* delimiter="\n", size_t bufsize=4096);
                                                   ^~~~
motif.cc: In member function 'double Motif::findMotif(int, int, int, int, int)':
motif.cc:2876:14: warning: variable 'prevProb' set but not used [-Wunused-but-set-variable]
       double prevProb=0;
              ^~~~~~~~
motif.cc:2878:14: warning: variable 'locMaxInfo' set but not used [-Wunused-but-set-variable]
       double locMaxInfo=0;
              ^~~~~~~~~~
elph.cc: In function 'int main(int, char**)':
elph.cc:134:30: warning: 'info' may be used uninitialized in this function [-Wmaybe-uninitialized]
     globAlignProb=M->optimize(globAlignProb,info,closest);
                   ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
motif.cc: In constructor 'Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)':
motif.cc:908:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets(line,5000,M);
    ~~~~~^~~~~~~~~~~~~
motif.cc: In member function 'double Motif::findMDet(int)':
motif.cc:1222:9: warning: 'maxinfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
     diff=maxinfo-optinfo;
     ~~~~^~~~~~~~~~~~~~~~
motif.cc: In constructor 'Motif::Motif(const char*, FILE*, seqType, const char*, const char*, int, int, int, int, int)':
motif.cc:1045:29: warning: 'info' may be used uninitialized in this function [-Wmaybe-uninitialized]
       globAlignProb=optimize(globAlignProb,info,0);
                     ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++  -o elph elph.o motif.o GBase.o GString.o GArgs.o 
make: Leaving directory '/builddir/build/BUILD/ELPH/sources'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.8Ab7xI
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
++ dirname /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
+ cd ELPH
+ rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
+ mkdir -p /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/bin
+ install -m 755 sources/elph /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386//usr/bin
+ /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 1.0.1-21.fc29 --unique-debug-suffix -1.0.1-21.fc29.i386 --unique-debug-src-base elph-1.0.1-21.fc29.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/ELPH
extracting debug info from /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/bin/elph
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
299 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.BlAjpG
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ exit 0
Processing files: elph-1.0.1-21.fc29.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VR9VgE
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ DOCDIR=/builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ cp -pr COPYRIGHT /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ cp -pr LICENSE /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ cp -pr README /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ cp -pr Readme.ELPH /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ cp -pr VERSION /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386/usr/share/doc/elph
+ exit 0
Provides: elph = 1.0.1-21.fc29 elph(x86-32) = 1.0.1-21.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libgcc_s.so.1 libm.so.6 libm.so.6(GLIBC_2.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) rtld(GNU_HASH)
Processing files: elph-debugsource-1.0.1-21.fc29.i686
Provides: elph-debugsource = 1.0.1-21.fc29 elph-debugsource(x86-32) = 1.0.1-21.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: elph-debuginfo-1.0.1-21.fc29.i686
Provides: debuginfo(build-id) = f840e4cd1ffa7f022aca71a9fe9522326cdc0d70 elph-debuginfo = 1.0.1-21.fc29 elph-debuginfo(x86-32) = 1.0.1-21.fc29
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: elph-debugsource(x86-32) = 1.0.1-21.fc29
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
Wrote: /builddir/build/RPMS/elph-1.0.1-21.fc29.i686.rpm
Wrote: /builddir/build/RPMS/elph-debugsource-1.0.1-21.fc29.i686.rpm
Wrote: /builddir/build/RPMS/elph-debuginfo-1.0.1-21.fc29.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.pYdgHC
+ umask 022
+ cd /builddir/build/BUILD
+ cd ELPH
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/elph-1.0.1-21.fc29.i386
+ exit 0
Child return code was: 0