Mock Version: 3.0 Mock Version: 3.0 Mock Version: 3.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], chrootPath='/var/lib/mock/f36-build-side-55483-36995334-4722316/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658448000 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'], chrootPath='/var/lib/mock/f36-build-side-55483-36995334-4722316/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/avogadro2-libs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658448000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.nHZHDF + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/avogadrolibs-1.97.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.97.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/avogenerators-1.97.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + unzip -qq /builddir/build/SOURCES/avogadro2-libs-molecules-master.zip + mv molecules-master molecules + tar -xf /builddir/build/SOURCES/avogadro2-libs-crystals-1.0.1.tar.gz + mv crystals-1.0.1 crystals + mv molecules/LICENSE molecules/LICENSE-molecules + echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):' Patch #0 (avogadro2-libs-set_pythonpath.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt Hunk #1 succeeded at 37 (offset -4 lines). patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt Hunk #1 succeeded at 20 (offset -4 lines). Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch): + echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/insertfragment/CMakeLists.txt + mv avogenerators-1.97.0 avogadrogenerators + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.eMY0wT + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh avogadro2-libs 1.97.0-1.fc36 x86_64 + cd avogadrolibs-1.97.0 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.10 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib64/libsymspg.so -DSPGLIB_INCLUDE_DIR:PATH=/usr/include/spglib -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -- The C compiler identification is GNU 12.1.1 -- The CXX compiler identification is GNU 12.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.97.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found SPGLIB: /usr/include/spglib -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/include -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") found components: C -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.10.5", minimum required is "3") We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/terachem.py -- Found LIBARCHIVE: /usr/include -- Found Doxygen: /usr/bin/doxygen (found version "1.9.1") found components: doxygen dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_BOOST_PYTHON USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadrolibs-1.97.0/build + /usr/bin/make -O -j6 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build 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'/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl 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/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx: In function 'int main(int, char**)': /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:129:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (i = 0; i < atoms.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:131:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 131 | if (i != atoms.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:136:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 136 | for (i = 0; i < singleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:139:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 139 | if (i != singleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:144:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | for (i = 0; i < doubleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:147:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 147 | if (i != doubleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:181:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | for (int j = 0; j < residueClassNames.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:184:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 184 | if (j != residueClassNames.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Linking CXX executable ../../bin/resdataparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/cmake -E cmake_link_script CMakeFiles/resdataparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -rdynamic CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o ../../bin/resdataparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target resdataparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -MF CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o.d -o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp: In static member function 'static Avogadro::Vector3 Avogadro::Core::AtomUtilities::generateNewBondVector(const Avogadro::Core::Atom&, const std::vector, std::allocator > >&, Avogadro::Core::AtomHybridization)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:109:10: warning: variable 'noA2' set but not used [-Wunused-but-set-variable] 109 | bool noA2 = false; | ^~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h: At global scope: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h:19:21: warning: 'unsigned int Avogadro::Core::atomValence(unsigned char, int, unsigned int)' defined but not used [-Wunused-function] 19 | static unsigned int atomValence(const unsigned char atomicNumber, | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM[(double &)&pos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: 'MEM[(double &)&pos3d + 16]' was declared here 69 | Vector3 pos3d; | ^~~~~ In file included from /usr/include/c++/12/istream:39, from /usr/include/c++/12/sstream:38, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:6: In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:164:76: /usr/include/c++/12/ostream:221:25: warning: 'MEM[(Scalar &)&fpos3d]' may be used uninitialized [-Wmaybe-uninitialized] 221 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:172:76: /usr/include/c++/12/ostream:221:25: warning: 'MEM[(Scalar &)&fpos3d + 8]' may be used uninitialized [-Wmaybe-uninitialized] 221 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 8]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In file included from /usr/include/c++/12/ios:40, from /usr/include/c++/12/istream:38: In function 'std::char_traits::length(char const*)', inlined from 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&' at /usr/include/c++/12/ostream:621:44, inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:141:67: /usr/include/c++/12/bits/char_traits.h:395:32: warning: 'name' may be used uninitialized [-Wmaybe-uninitialized] 395 | return __builtin_strlen(__s); | ~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:68:15: note: 'name' was declared here 68 | const char* name; | ^~~~ In function 'std::char_traits::length(char const*)', inlined from 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&' at /usr/include/c++/12/ostream:621:44, inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:138:69: /usr/include/c++/12/bits/char_traits.h:395:32: warning: 'symbol' may be used uninitialized [-Wmaybe-uninitialized] 395 | return __builtin_strlen(__s); | ~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:67:15: note: 'symbol' was declared here 67 | const char* symbol; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:180:76: /usr/include/c++/12/ostream:221:25: warning: 'MEM[(Scalar &)&fpos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 221 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 16]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp: In member function 'virtual Avogadro::Vector3f Avogadro::Rendering::BSplineGeometry::computeCurvePoint(float, const std::__cxx11::list&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:54:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 54 | else if (startIndex > size - 2 * lookahead) startIndex = size - 2 * lookahead; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:38:16: warning: unused variable 'd' [-Wunused-variable] 38 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::operator++()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:118:18: warning: unused variable 'd' [-Wunused-variable] 118 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:74:9: warning: unused variable 'count' [-Wunused-variable] 74 | Index count = m_mol->atomCount(); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert1].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert2].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/c++/12/vector:64, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:6: In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)': /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16: note: '' declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:640:6: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)': /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16: note: '' declared here 647 | coords.resize(molecule.atomCount()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -rdynamic CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -MF CMakeFiles/AvogadroCore.dir/layer.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -MF CMakeFiles/AvogadroCore.dir/layermanager.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'void Avogadro::Core::Graph::updateSubgraphs() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:532:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 532 | for (int i = 0; i < m_subgraphToVertices.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:424:17: warning: 'MEM[(long unsigned int * &)&changeTo1 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1 + 8]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:423:17: warning: 'MEM[(long unsigned int * &)&changeTo1]' may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:422:17: warning: 'MEM[(long unsigned int * &)&changeTo2 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2 + 8]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:421:17: warning: 'MEM[(long unsigned int * &)&changeTo2]' may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/12/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/12/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/12/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/12/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/12/bits/stl_uninitialized.h:467:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/12/bits/stl_vector.h:1702:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/12/bits/stl_vector.h:567:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::Core::Mesh::smooth(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.190827].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp: In member function 'Avogadro::Core::Mesh::smooth(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: note: '' declared here 189 | Array planarList(m_vertices.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -MF CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o.d -o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assign(Avogadro::Core::Molecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:63:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 63 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:113:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 113 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 131 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assignBackboneHydrogenBonds()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:217:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 217 | for (unsigned int i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:221:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 221 | for (unsigned int j = i + 1; j < n; ++j) { | ~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp:50:8: warning: 'std::size_t Avogadro::Core::{anonymous}::DistanceMatrix::operator()(std::size_t, std::size_t) const' defined but not used [-Wunused-function] 50 | size_t DistanceMatrix::operator()(size_t i, size_t j) const | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 8]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 8]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 4]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 4]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometrmake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' y::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous]' was declared here 80 | Vector3f previous; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -MF CMakeFiles/AvogadroRendering.dir/drawable.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o -MF CMakeFiles/AvogadroRendering.dir/node.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o CMakeFiles/AvogadroCore.dir/version.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o -MF CMakeFiles/AvogadroRendering.dir/scene.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shader.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In copy constructor 'Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:34:1: warning: when initialized here [-Wreorder] 34 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In constructor 'Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:75:1: warning: when initialized here [-Wreorder] 75 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp: In member function 'void Avogadro::Core::Molecule::setPartialCharges(const std::string&, const Avogadro::MatrixX&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:248:20: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase >::Index' {aka 'long int'} and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 248 | if (value.size() != atomCount()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp: In member function 'bool Avogadro::Rendering::ShaderProgram::setTextureSampler(const std::string&, const Avogadro::Rendering::Texture2D&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp:280:59: warning: typedef 'TMapIter' locally defined but not used [-Wunused-local-typedefs] 280 | typedef std::map::const_iterator TMapIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:90:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:92:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:94:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:96:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -MF CMakeFiles/AvogadroCore.dir/residue.cpp.o.d -o CMakeFiles/AvogadroCore.dir/residue.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0(int, int) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp: In member function 'void Avogadro::Rendering::VRMLVisitor::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:62:12: warning: variable 'cameraX' set but not used [-Wunused-but-set-variable] 62 | Vector3f cameraX = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:64:12: warning: variable 'cameraY' set but not used [-Wunused-but-set-variable] 64 | Vector3f cameraY = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:66:12: warning: variable 'cameraZ' set but not used [-Wunused-but-set-variable] 66 | Vector3f cameraZ = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:71:12: warning: variable 'light0pos' set but not used [-Wunused-but-set-variable] 71 | Vector3f light0pos = | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1156:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1158:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1160:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1154:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroRendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.97.0 CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o CMakeFiles/AvogadroRendering.dir/camera.cpp.o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/node.cpp.o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/scene.cpp.o CMakeFiles/AvogadroRendering.dir/shader.cpp.o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroRendering make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCore.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.97.0 CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o CMakeFiles/AvogadroCore.dir/cube.cpp.o CMakeFiles/AvogadroCore.dir/elements.cpp.o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o CMakeFiles/AvogadroCore.dir/graph.cpp.o CMakeFiles/AvogadroCore.dir/layer.cpp.o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o CMakeFiles/AvogadroCore.dir/mesh.cpp.o CMakeFiles/AvogadroCore.dir/molecule.cpp.o CMakeFiles/AvogadroCore.dir/mutex.cpp.o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o CMakeFiles/AvogadroCore.dir/residue.cpp.o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o CMakeFiles/AvogadroCore.dir/version.cpp.o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libsymspg.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0.constprop': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCore make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h: In constructor 'Avogadro::Calc::DefaultModel::DefaultModel(const std::string&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80:15: warning: 'Avogadro::Calc::DefaultModel::m_identifier' will be initialized after [-Wreorder] 80 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:18:35: warning: base 'Avogadro::Calc::ChargeModel' [-Wreorder] 18 | : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:17:1: warning: when initialized here [-Wreorder] 17 | DefaultModel::DefaultModel(const std::string& id) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.97.0 CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.97.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Built target AvogadroCalc make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp: In function 'void Avogadro::Io::{anonymous}::removeFromMap(Map&, const VectorOfKeys&, const ValueType&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp:166:49: warning: typedef 'KeysIter' locally defined but not used [-Wunused-local-typedefs] 166 | typedef typename VectorOfKeys::const_iterator KeysIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp: In member function 'Avogadro::Io::GromacsFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:141:39: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 141 | int atomicNum = r->getAtomicNumber(value); | ~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:57:12: note: 'r' was declared here 57 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp: In member function 'Avogadro::Io::PdbFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:149:28: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 149 | r->addResidueAtom(atomName, newAtom); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:46:12: note: 'r' was declared here 46 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:10: In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'gamma' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:30: note: 'gamma' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'beta' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:24: note: 'beta' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:17: note: 'alpha' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'c' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:14: note: 'c' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'b' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:11: note: 'b' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:8: note: 'a' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:51:25: warning: variable 'id_idx' set but not used [-Wunused-but-set-variable] 51 | type_idx = -1, id_idx = -1; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:263:5: warning: 'numAtoms2' may be used uninitialized [-Wmaybe-uninitialized] 263 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:226:10: note: 'numAtoms2' was declared here 226 | size_t numAtoms2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:40: note: 'zmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:34: note: 'zmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:28: note: 'ymax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:22: note: 'ymin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:16: note: 'xmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:10: note: 'xmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.97.0 CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 ../../thirdparty/struct/libstruct.a /usr/lib64/libhdf5.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target AvogadroIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Built target AvogadroQtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -MF CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o.d -o CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/cjsontocml.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Linking CXX executable ../../bin/avocjsontocml cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avocjsontocml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/qtgui.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o -MF CMakeFiles/avobabel.dir/avobabel.cpp.o.d -o CMakeFiles/avobabel.dir/avobabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/avobabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -rdynamic CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Built target avobabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1299, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp: In member function 'virtual void Avogadro::QtGui::ElementDetail::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:72:29: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 72 | int pixelWidth = fm2.width(symbol); | ~~~~~~~~~^~~~~~~~ In file included from /usr/include/qt5/QtGui/QFontMetrics:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:12: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1299, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/backgroundfileformat.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:18: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp: In static member function 'static QString Avogadro::QtGui::FileBrowseWidget::searchSystemPathForFile(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:31: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use Qt::SplitBehavior variant instead [-Wdeprecated-declarations] 169 | QStringList paths = env.value(QStringLiteral("PATH")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .split(pathSplitter, QString::SkipEmptyParts); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'virtual void Avogadro::QtGui::GenericHighlighter::highlightBlock(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:70:33: warning: typedef 'RuleIter' locally defined but not used [-Wunused-local-typedefs] 70 | typedef QList::iterator RuleIter; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'void Avogadro::QtGui::GenericHighlighter::Rule::apply(const QString&, Avogadro::QtGui::GenericHighlighter&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:78:36: warning: typedef 'PatternIter' locally defined but not used [-Wunused-local-typedefs] 78 | typedef QList::iterator PatternIter; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp: In static member function 'static QString Avogadro::QtGui::FileFormatDialog::generateFilterString(const std::vector&, FilterStringOptions)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:227:28: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 227 | if (!formatMap.values(name).contains(ext)) { | ~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtGui/qtextformat.h:48, from /usr/include/qt5/QtGui/qtextcursor.h:46, from /usr/include/qt5/QtWidgets/qlineedit.h:45, from /usr/include/qt5/QtWidgets/qinputdialog.h:45, from /usr/include/qt5/QtWidgets/QInputDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:11: /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:228:30: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 228 | formatMap.insertMulti(name, ext); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qfiledialog.h:43, from /usr/include/qt5/QtWidgets/QFileDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:247:53: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 247 | foreach (const QString& desc, formatMap.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:249:52: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 249 | QStringList formatExtensions = formatMap.values(desc); | ~~~~~~~~~~~~~~~~^~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM [(struct DenseStorage *)&position + 16B]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: 'MEM [(struct DenseStorage *)&position + 16B]' was declared here 133 | Vector3 position; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp: In member function 'void Avogadro::QtGui::InterfaceWidget::showError(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:78:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 78 | int charWidth = metrics.width(QStringLiteral("i7OPlmWn9/")) / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp: In static member function 'static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp:230:13: warning: unused variable 'explicitBonds' [-Wunused-variable] 230 | const int explicitBonds = bonds.size(); | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QVariant Avogadro::QtGui::LayerModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 59 | if (idx.row() == names.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:80:21: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 80 | if (layer == static_cast(getMoleculeLayer().activeLayer())) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QModelIndex Avogadro::QtGui::LayerModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:161:25: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 161 | if (row >= 0 && row <= m_item) | ~~~~^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'void Avogadro::QtGui::LayerModel::removeItem(int, Avogadro::QtGui::RWMolecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:210:11: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 210 | if (row <= m_item) { | ~~~~^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQuantumIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.97.0 CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Built target AvogadroQuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1299, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h: In member function 'Avogadro::QtGui::ContainerWidget* Avogadro::QtGui::MultiViewWidget::createContainer(QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h: In constructor 'Avogadro::QtGui::Molecule::Molecule(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:262:15: warning: 'Avogadro::QtGui::Molecule::m_undoMolecule' will be initialized after [-Wreorder] 262 | RWMolecule* m_undoMolecule; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:17:65: warning: base 'Avogadro::Core::Molecule' [-Wreorder] 17 | m_undoMolecule(new RWMolecule(*this, this)), Core::Molecule() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:15:1: warning: when initialized here [-Wreorder] 15 | Molecule::Molecule(QObject* parent_) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -std=c++17 -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/qube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/avogadrolibs-1.97.0/.package_note-avogadro2-libs-1.97.0-1.fc36.x86_64.ld -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.97.0 CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.3 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Gui.so.5.15.3 /usr/lib64/libQt5Core.so.5.15.3 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target ApplyColors_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target AvogadroMoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target Cartoons_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target AvogadroQtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target FetchPDB_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target ImportPQR_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Focus_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target NucleicInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target InsertFragment_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LammpsInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Label_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target LabelEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenMMInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/configdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochem.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target MongoChem_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PropertyTables_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Select_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ResetView_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target VRML_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target commands_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target SVG_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target ScriptCharges_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Spectra_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target PluginDownloader_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Force_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target CloseContacts_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target NonCovalent_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target VanDerWaalsAO_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/12 -I/usr/include/c++/12/x86_64-redhat-linux -I/usr/include/c++/12/backward -I/usr/lib/gcc/x86_64-redhat-linux/12/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/chargedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/../../../../../avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target QTAIMScenePlugin make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bondingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target ApplyColors make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++17 -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -DNDEBUG -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++17 -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondin