Mock Version: 1.3.3 Mock Version: 1.3.3 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/avogadro.spec'], uid=1000gid=425logger=printOutput=Falseenv={'PS1': ' \\s-\\v\\$ ', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'HOSTNAME': 'mock'}shell=Falsetimeout=172800chrootPath='/var/lib/mock/f26-build-7557856-692597/root'user='mockbuild') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'PS1': ' \\s-\\v\\$ ', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'HOSTNAME': 'mock'} and shell False Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/avogadro-1.2.0-6.fc26.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/avogadro.spec'], private_network=Trueuid=1000gid=425logger=printOutput=Falseenv={'PS1': ' \\s-\\v\\$ ', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'HOSTNAME': 'mock'}shell=Falsetimeout=172800chrootPath='/var/lib/mock/f26-build-7557856-692597/root'user='mockbuild') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'PS1': ' \\s-\\v\\$ ', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'LANG': 'en_US.UTF-8', 'HOME': '/builddir', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'TERM': 'vt100', 'HOSTNAME': 'mock'} and shell False Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Dlirc3 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadro-1.2.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/avogadro-1.2.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (avogadro-1.1.1-mkspecs-dir.patch): + echo 'Patch #0 (avogadro-1.1.1-mkspecs-dir.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .mkspecs-dir --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 552 (offset 5 lines). + echo 'Patch #1 (avogadro-1.1.1-no-strip.patch):' Patch #1 (avogadro-1.1.1-no-strip.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .no-strip --fuzz=0 patching file CMakeLists.txt Patch #2 (avogadro-1.1.1-pkgconfig_eigen.patch): + echo 'Patch #2 (avogadro-1.1.1-pkgconfig_eigen.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .pkgconfig_eigen --fuzz=0 patching file avogadro.pc.in Patch #10 (avogadro-cmake-3.2.patch): + echo 'Patch #10 (avogadro-cmake-3.2.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .cmake_x11 --fuzz=0 patching file CMakeLists.txt Patch #12 (avogadro-1.1.1-Q_MOC_RUN.patch): + echo 'Patch #12 (avogadro-1.1.1-Q_MOC_RUN.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .Q_MOC_RUN --fuzz=0 patching file libavogadro/src/pythonengine_p.h Hunk #1 succeeded at 31 (offset 4 lines). patching file libavogadro/src/pythonextension_p.h Hunk #1 succeeded at 33 (offset 4 lines). patching file libavogadro/src/pythoninterpreter.h patching file libavogadro/src/pythonscript.h patching file libavogadro/src/pythontool_p.h Hunk #1 succeeded at 31 (offset 4 lines). Patch #13 (avogadro-1.1.1-python_openbabel.patch): + echo 'Patch #13 (avogadro-1.1.1-python_openbabel.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .python_openbabel --fuzz=0 patching file libavogadro/src/python/CMakeLists.txt Patch #14 (avogadro-1.1.1-qt.patch): + echo 'Patch #14 (avogadro-1.1.1-qt.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .qt --fuzz=0 patching file libavogadro/tests/moleculefiletest.cpp Hunk #1 succeeded at 153 (offset 2 lines). Hunk #2 succeeded at 173 (offset 2 lines). Patch #15 (avogadro-1.2.0-libmsymfloat.patch): + echo 'Patch #15 (avogadro-1.2.0-libmsymfloat.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .libmsymfloat --fuzz=0 patching file libavogadro/src/extensions/symmetry/libmsym/src/orbital.c ++ find . -perm /755 -type f '(' -name '*.cpp' -o -name '*.h' -o -name '*.c' ')' + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculetest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/modeltest.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculebench.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/primitivemodeltest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/moleculefiletest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/drawcommandtest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/neighborlisttest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/hydrogenscommandtest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/tests/modeltest.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/idlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/zmatrix.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cylinder_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/meshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plugin.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/bond.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/moleculefile.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/residue.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictableview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/meshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glpainter_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonscript.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autorotatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autoopttool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/navigatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/selectrotatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/aligntool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/moveatomcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixtool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/bondcentrictool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/bondcentrictool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/selectrotatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/moveatomcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawtool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/skeletontree.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/clickmeasuretool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawtool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autorotatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/manipulatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/eyecandy.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/aligntool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixtool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/navigatetool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/drawcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/manipulatetool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/eyecandy.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/skeletontree.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/zmatrixmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/clickmeasuretool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tools/autoopttool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythoninterpreter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitive.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colorbutton.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictablescene_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/undosequence.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonerror.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pluginmanager.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textrenderer_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/mesh.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/zmatrix.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/readfilethread_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/undosequence.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/fragment.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/idlist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cylinder_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotpoint.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/bond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/protein.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementtranslator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonextension_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/neighborlist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictablescene_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/animation.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textmatrixeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/mesh.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ribbonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/axesengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/polygonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/simplewireengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/surfaceengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/labelengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/dipoleengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/qtaimengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonmeshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/wireengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/labelengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/dipoleengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/forceengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ringengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/bsdyengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/sphereengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/surfaceengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/stickengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ringengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/polygonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonmeshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/simplewireengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/stickengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/hbondengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/cartoonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/axesengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/ribbonengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/sphereengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/wireengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/bsdyengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/forceengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/qtaimengine.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/engines/hbondengine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitivelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/vdwsurface.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfaceextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/molpro.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitaltablemodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfacedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfaceextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/approxmath.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/vdwsurface.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/htmldelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/htmldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/molpro.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basisset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessus.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/orca.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basisset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/slaterset.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/qube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/mopacaux.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molden.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/cube.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/openqubeabi.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/atom.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/orca.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molecule.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basissetloader.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessus.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/molden.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gamessukout.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/slaterset.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/openqube/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/surfacedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/surfaces/orbitalwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertcommand.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertcommand.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/molecularpropextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/shaderextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2ps.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2ps.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2psTest.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2ps/gl2psTestSimple.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/h2methylextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertpeptideextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaanalysedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaspectra.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaanalysedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcadata.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcaspectra.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcainputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcadata.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/orca/orcainputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercellextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/avospglib.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ceundo.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystalpastedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/avospglib.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ceundo.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceparametereditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cematrixeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/stablecomparison.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystallographyextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystallographyextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/site_symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spin.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/kpoint.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/sitesym_database.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/primitive.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/cell.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spacegroup.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/site_symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/mathfunc.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/mathfunc.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/kpoint.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/refinement.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spg_database.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/pointgroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/refinement.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spacegroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/lattice.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/debug.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/debug.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/primitive.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/lattice.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/sitesym_database.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spg_database.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spin.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/pointgroup.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/spglib_f.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/hall_symbol.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/hall_symbol.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/cell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/crystallography/crystalpastedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/shaderextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/sortfiltertreeproxymodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/pythonterminal.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlpainter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/trajvideomaker.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/networkfetchextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povraydialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/networkfetchextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmldialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/hydrogensextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2psextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertdnaextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/symmetryextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/symmetryextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/geometry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/context.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symop.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/linalg.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/linalg.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/geometry.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/orbital.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/context.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/character_table.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/point_group.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/elements.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symop.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/msym_error.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/point_group.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/permutation.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/orbital.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/elements.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/permutation.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/src/character_table.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/symmetry/libmsym/examples/example.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/wiitrackextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/fileimportextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/conformersearchdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/selectextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/conformersearchdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/propmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertdnaextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/avotubegen.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/avotubegen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CoreConst.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Constants.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Cell.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/highlighter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/gl2psextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmlpainter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertpeptideextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/sortfiltertreeproxymodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povrayextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/hydrogensextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/animationextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercellextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/cartesianextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/pythonterminal.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/invertchiralextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercelldialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefieldextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcubature.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimodeintegrator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunction.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcubature.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimmathutilities.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/fileimportextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/supercelldialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/trajvideomaker.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/h2methylextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefieldextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/selectextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povraydialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/insertfragmentextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/invertchiralextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/constraintsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povpainter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdata.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/teracheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/daltoninputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/mopacinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdata.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/molproinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/lammpsinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessukinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputfileextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/molproinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/nwcheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/qcheminputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamesshighlighter.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/abinitinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gaussianinputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/psi4inputdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/quantuminput/inputfileextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/highlighter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/vrmldialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povpainter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/molecularpropextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefielddialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/cartesianextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/wiitrackextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/povrayextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/uv.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/ir.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/abstract_ir.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/nmr.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectraextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/abstract_ir.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectradialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectradialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectratype.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectratype.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/ir.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/uv.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/cd.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/vibrationextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/dos.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/cd.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/dos.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/nmr.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/raman.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/spectraextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/spectra/raman.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extensions/forcefielddialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/moleculefile.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitive.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/tool.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/toolgroup.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/fragment.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotaxis.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/periodictableview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotobject.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythontool_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementitem_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/atomindexcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/customcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/chargecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/residuecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/residuecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/customcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/elementcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/distancecolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/smartscolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/elementcolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/chargecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/atomindexcolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/distancecolor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colors/smartscolor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/meshgenerator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculefile.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/residue.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/periodictableview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculelist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/tool.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/main.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/pluginmanager.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/mesh.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/qstring.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/std_vector.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/engine.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/glwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/bond.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/sip.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/painter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/cube.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/molecule.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/primitivelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/swig.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/primitive.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/toolgroup.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/fragment.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/moleculelist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/qlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/neighborlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/camera.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/navigate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/animation.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/eigen.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/extension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/plugin.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/painterdevice.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/elementtranslator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/python/color.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/cube.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/primitivelist.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/neighborlist.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythontool_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonengine_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementdetail_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/protein.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotobject.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonthread_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonscript.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotaxis.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/camera.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/navigate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textrenderer_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonextension_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/camera.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color3f.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/animation.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/atom.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonengine_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythonerror.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementdetail_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glhit.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/molecule.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/readfilethread_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/obeigenconv.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/extension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pluginmanager.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plugin.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/navigate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/textmatrixeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/sphere_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glhit.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementitem_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/painterdevice.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/glpainter_p.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/elementtranslator.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/global.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/surfacemeshgenerator.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/global.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/colorbutton.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/pythoninterpreter.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/atom.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/residue.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/color.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/plotpoint.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/toolgroup.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/sphere_p.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/src/dockwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplaydialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplaydialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/02-DynamicDisplay/dynamicdisplayextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/03-ViewPlane/viewplaneextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectiondialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectionextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/04-RotateSelection/rotateselectiondialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworlddialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworlddialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/01-HelloWorld/helloworldextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/thirdPartyExtensions/05-ConformerPlot/conformerplotdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/c++/templateextension.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./libavogadro/examples/c++/templateextension.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineviewwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodeldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/glgraphicsview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitivetreeview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/main.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/editcommands.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeitem.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginlistview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/detachedview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/importdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/glgraphicsview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/detachedview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/savedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeeditor.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginlistview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeeditor.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/addenginedialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginecolorswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginelistview.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginelistview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/editcommands.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/importdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginsettings.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemdelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemdelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/application.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginsettings.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/settingsdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/savedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineprimitiveswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitiveitemmodel.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreeitem.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/flattabwidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatecheck.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineprimitiveswidget.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/residuedelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/moleculedelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/bonddelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/moleculedelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/selectiondelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/labeldelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/selectiondelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/labeldelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/residuedelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/bonddelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/atomdelegate.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projectdelegates/atomdelegate.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/flattabwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/addenginedialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/engineviewwidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/pluginitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitivetreeview.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/enginecolorswidget.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/mainwindow.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/updatecheck.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/aboutdialog.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/aboutdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/settingsdialog.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/primitiveitemmodel.cpp + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/mainwindow.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/application.h + for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)` + chmod a-x ./avogadro/src/projecttreemodeldelegate.h Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0iKvxm + exit 0 + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + mkdir -p aarch64-redhat-linux-gnu + pushd aarch64-redhat-linux-gnu ~/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu ~/build/BUILD/avogadro-1.2.0 + export 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -Wno-dev -DENABLE_TESTS:BOOL=ON -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_VERSIONED_PLUGIN_DIR:BOOL=OFF -DINSTALL_LIB_DIR:PATH=lib64/avogadro/extensions -DENABLE_THREADEDGL:BOOL=ON -DINSTALL_CMAKE_DIR:PATH=lib64/libmsym/cmake .. -- The C compiler identification is GNU 7.0.1 -- The CXX compiler identification is GNU 7.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/lib64/libGL.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Cannot find Eigen3, trying Eigen2 -- Found Eigen2: /usr/include/eigen2 (Required is at least version "2.0.0") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.2.2") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.63.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib64/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python (found version "2.7.13") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267008 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- Unit testing enabled, run make test to run them -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering enabled - needs more testing -- Setting new boost python libraries failed to create symbolic link '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro//builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.7", minimum required is "4.6") -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Cannot find Eigen3, trying Eigen2 -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib64/python2.7/site-packages -- Test: drawcommand -- Test: molecule -- Test: moleculefile -- Test: neighborlist -- Benchmark: molecule -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu ~/build/BUILD/avogadro-1.2.0 + popd + make -j4 -C aarch64-redhat-linux-gnu make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/cmake -H/builddir/build/BUILD/avogadro-1.2.0 -B/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/CMakeFiles /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 0%] Generating moc_elementcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters [ 0%] Generating ui_bsdysettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdysettingswidget.ui [ 0%] Generating moc_bsdyengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend [ 0%] Generating qrc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name navigatetool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.qrc make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= [ 0%] Generating moc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters Scanning dependencies of target msym make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build Scanning dependencies of target elementcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c [ 1%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Generating ui_navigatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatesettingswidget.ui In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:14:0: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ Scanning dependencies of target bsdyengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build Scanning dependencies of target navigatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp [ 1%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:16: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] static double dpolynomial [][9] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] static double ppolynomial [][3] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] static double spolynomial [][1] = { ^~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.c:16: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/string.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c: In function 'copyEquivalenceSets': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:38:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:17: At top level: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] static double dpolynomial [][9] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] static double ppolynomial [][3] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] static double spolynomial [][1] = { ^~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:15: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/elementcolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:16: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] static double dpolynomial [][9] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] static double ppolynomial [][3] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] static double spolynomial [][1] = { ^~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:16: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 1%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:18: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c: In function 'orbitalFromQuantumNumbers': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:71:52: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size between 0 and 6 [-Wformat-truncation=] snprintf(o->name, sizeof(o->name), "%dd%d%s",n,abs(m),d); ^~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:71:48: note: directive argument in the range [0, 2147483647] snprintf(o->name, sizeof(o->name), "%dd%d%s",n,abs(m),d); ^~~~~~~~~ In file included from /usr/include/stdio.h:939:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:14, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:18: /usr/include/bits/stdio2.h:64:10: note: '__builtin___snprintf_chk' output between 5 and 24 bytes into a destination of size 8 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:77:53: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size between 0 and 6 [-Wformat-truncation=] snprintf(o->name, sizeof(o->name), "%d%c%d%s",n,t,abs(m),d); ^~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:77:48: note: directive argument in the range [0, 2147483647] snprintf(o->name, sizeof(o->name), "%d%c%d%s",n,t,abs(m),d); ^~~~~~~~~~ In file included from /usr/include/stdio.h:939:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:14, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:18: /usr/include/bits/stdio2.h:64:10: note: '__builtin___snprintf_chk' output between 5 and 24 bytes into a destination of size 8 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Linking CXX static library elementcolor.a cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 3%] Built target elementcolor [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c: In function 'findPermutationSubgroups': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:183:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ [ 4%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c: In function 'findPointGroup': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:454:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:19: At top level: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdlib.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c: In function 'symmetrizeTranslation': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:222:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:17:0: At top level: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] static double dpolynomial [][9] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] static double ppolynomial [][3] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] static double spolynomial [][1] = { ^~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.h:17, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:16: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetryPlanarRegular': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:196:110: warning: variable 'split' set but not used [-Wunused-but-set-variable] int sigma_h = vzero(cm,thresholds->zero), order = es->length, prim = 2, div_len, even, inversion, n = 0, split = 0; ^~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetrySymmetricPolyhedron': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:378:71: warning: variable 'theta_sigma' set but not used [-Wunused-but-set-variable] double v0[3], v0_proj[3], v_init[3], dot0, theta, theta_C2 = 0.0, theta_sigma = 0.0; ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetrySpherical': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:636:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'findSymmetryCubic': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:650:122: warning: variable 'ecb' set but not used [-Wunused-but-set-variable] int found = 0, nsigma = 0, esigma = 0, inversion = 0, nc[6] = {0,0,0,0,0,0}, ec[6] = {0,0,0,0,0,0}, *ncb = &nsigma, *ecb = &esigma,*nc3b = &nsigma; ^~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c: In function 'filterSymmetryOperations': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:1204:1: warning: label 'err' defined but not used [-Wunused-label] err: ^~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:16: At top level: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmsym_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/math.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:14: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:34:15: warning: 'dpolynomial' defined but not used [-Wunused-variable] static double dpolynomial [][9] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:25:15: warning: 'ppolynomial' defined but not used [-Wunused-variable] static double ppolynomial [][3] = { ^~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/orbital.h:21:15: warning: 'spolynomial' defined but not used [-Wunused-variable] static double spolynomial [][1] = { ^~~~~~~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/point_group.h:17:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/context.h:16, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:14: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:303:50: warning: 'CnvIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnvIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:299:50: warning: 'CnhIrrep' defined but not used [-Wunused-variable] static const enum IrreducibleRepresentationEnum *CnhIrrep[] = { ^~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/libmsym/src/character_table.h:20:20: warning: 'IrreducibleRepresentationName' defined but not used [-Wunused-variable] static const char *IrreducibleRepresentationName[] = ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend [ 4%] Linking CXX static library bsdyengine.a cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a Scanning dependencies of target spglib make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build [ 4%] Linking CXX static library navigatetool.a cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 [ 4%] Built target bsdyengine make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a [ 4%] Generating moc_slaterset.cxx [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/cell.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/cell.c make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Built target navigatetool make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend [ 4%] Generating moc_basisset.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= Scanning dependencies of target tubegen make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/debug.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/debug.c [ 4%] Generating moc_gaussianset.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/hall_symbol.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c Scanning dependencies of target OpenQube make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/lattice.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/lattice.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/lattice.c [ 4%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c [ 4%] Linking C shared library ../../../../../lib64/libmsym.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -std=c99 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -Wl,-soname,libmsym.so -o ../../../../../lib64/libmsym.so CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o -L/usr/usr/lib64 make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Built target msym make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/DependInfo.cmake --color= [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp Scanning dependencies of target moleculefiletestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/mathfunc.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/mathfunc.c [ 4%] Generating moc_drawcommandtest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/moc_drawcommandtest.cxx_parameters [ 4%] Generating moc_moleculetest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/moc_moleculetest.cxx_parameters [ 4%] Generating moc_moleculefiletest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/moc_moleculefiletest.cxx_parameters [ 4%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/pointgroup.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/pointgroup.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/pointgroup.c In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 4%] Built target moleculefiletestmoc [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp [ 5%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/primitive.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/primitive.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/primitive.c [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/refinement.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/refinement.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/refinement.c In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp [ 5%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spacegroup.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spacegroup.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spacegroup.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spg_database.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spg_database.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spg_database.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib.c [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/symmetry.c [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/kpoint.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/kpoint.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/kpoint.c [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp [ 6%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/site_symmetry.c.o cd 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-I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/site_symmetry.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/site_symmetry.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/sitesym_database.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/sitesym_database.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/sitesym_database.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spglib_f.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spglib_f.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spglib_f.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/spin.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/spin.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/spin.c [ 6%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/tetrahedron_method.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -w -o CMakeFiles/spglib.dir/tetrahedron_method.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/spglib/tetrahedron_method.c [ 6%] Linking C static library libspglib.a cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/ar qc libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/kpoint.c.o CMakeFiles/spglib.dir/site_symmetry.c.o CMakeFiles/spglib.dir/sitesym_database.c.o CMakeFiles/spglib.dir/spglib_f.c.o CMakeFiles/spglib.dir/spin.c.o CMakeFiles/spglib.dir/tetrahedron_method.c.o /usr/bin/ranlib libspglib.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 6%] Built target spglib [ 6%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 7%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qstringlist.h:45, from /usr/include/QtCore/QStringList:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:20, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculetestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculetestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 7%] Built target moleculetestmoc make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/DependInfo.cmake --color= [ 7%] Linking CXX static library libtubegen.a cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 Scanning dependencies of target neighborlisttestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a [ 7%] Generating moc_neighborlisttest.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/moc_neighborlisttest.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 7%] Built target tubegen make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebenchmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 8%] Generating moc_moleculebench.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/moc_moleculebench.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 8%] Built target neighborlisttestmoc make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target drawcommandtestmoc make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Nothing to be done for 'libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 8%] Built target moleculebenchmoc make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend [ 8%] Built target drawcommandtestmoc make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 8%] Generating qrc_pythontool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/rcc -name pythontool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/qrc_pythontool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool.qrc [ 8%] Generating moc_animation.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx_parameters [ 8%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 8%] Generating moc_atom.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx_parameters [ 8%] Generating moc_bond.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_bond.cxx_parameters [ 8%] Generating moc_color.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_color.cxx_parameters [ 9%] Generating moc_colorbutton.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 9%] Generating moc_cube.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_cube.cxx_parameters [ 9%] Generating moc_dockextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters [ 9%] Generating moc_dockwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters [ 9%] Generating moc_elementdetail_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 9%] Generating moc_elementtranslator.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 9%] Generating moc_engine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx_parameters [ 9%] Generating moc_extension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_extension.cxx_parameters [ 9%] Generating moc_fragment.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters [ 9%] Generating moc_glwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 10%] Generating moc_mesh.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters [ 10%] Generating moc_meshgenerator.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 10%] Generating moc_molecule.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters [ 10%] Generating moc_moleculefile.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters [ 10%] Generating moc_periodictablescene_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 10%] Generating moc_periodictableview.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters [ 10%] Generating moc_plotwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp: In member function 'void OpenQube::ORCAOutput::processLine(OpenQube::GaussianSet*)': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:311:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (list.size() != numColumns+2) ~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:379:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (list.size() != numColumns+2) ~~~~~~~~~~~~^~~~~~~~~~~~~~~ [ 10%] Generating moc_plugin.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp: In member function 'void OpenQube::ORCAOutput::calculateDensityMatrix()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:521:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = 0; j < m_numBasisFunctions; j++) { ~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/orca.cpp:522:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i< m_numBasisFunctions; i++) { ~^~~~~~~~~~~~~~~~~~~~~ [ 10%] Generating moc_pluginmanager.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters [ 10%] Generating moc_primitive.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters [ 11%] Generating moc_protein.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_protein.cxx_parameters [ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Generating moc_readfilethread_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 11%] Generating moc_residue.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx_parameters [ 11%] Generating moc_textmatrixeditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 11%] Generating moc_tool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_tool.cxx_parameters [ 11%] Generating moc_toolgroup.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters [ 11%] Generating moc_zmatrix.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters [ 11%] Generating moc_pythonengine_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 11%] Generating moc_pythonerror.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters [ 12%] Generating moc_pythonextension_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 12%] Generating moc_pythontool_p.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 12%] Generating libavogadro_ar.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ar.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp: In member function 'void OpenQube::MoldenFile::unnormalizeBasis()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molden.cpp:259:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i=0;i::type Packet; ^~~~~~ [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/qtextstream.h:45, from /usr/include/QtCore/QTextStream:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.qm [ 12%] Generating libavogadro_bs.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/bs.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.qm [ 12%] Generating libavogadro_ca.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ca.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... In file included from /usr/include/eigen2/Eigen/Core:131:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:18: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 1>; _Scalar = double; int _Rows = 10000; int _Cols = 10000; int _Options = 2; int _MaxRows = 10000; int _MaxCols = 10000]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:254:22: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] _set_selector(other.derived(), typename ei_meta_if::ret()); ^~~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:155:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:189:56: required from 'static void Eigen::ei_solve_triangular_selector::run(const Lhs&, Rhs&) [with Lhs = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>; Rhs = Eigen::Block, 10000, 10000, 1, 32>; int UpLo = 2048]' /usr/include/eigen2/Eigen/src/Core/SolveTriangular.h:248:81: required from 'void Eigen::MatrixBase::solveTriangularInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, 10000, 10000, 1, 32>; Derived = Eigen::Flagged, 10000, 10000, 1, 32>, 2304, 0>]' /usr/include/eigen2/Eigen/src/LU/LU.h:499:3: required from 'bool Eigen::LU::solve(const Eigen::MatrixBase&, ResultType*) const [with OtherDerived = Eigen::CwiseNullaryOp, Eigen::Matrix >; ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/LU/LU.h:303:12: required from 'void Eigen::LU::computeInverse(ResultType*) const [with ResultType = Eigen::Matrix; MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/LU/Inverse.h:238:5: required from 'static void Eigen::ei_compute_inverse::run(const Derived&, OtherDerived*) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Matrix; int Size = 10000]' /usr/include/eigen2/Eigen/src/LU/Inverse.h:298:57: required from 'void Eigen::MatrixBase::computeInverse(Eigen::MatrixBase*) const [with ResultType = Eigen::Matrix; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/LU/Inverse.h:319:17: required from 'const PlainMatrixType Eigen::MatrixBase::inverse() const [with Derived = Eigen::Matrix; Eigen::MatrixBase::PlainMatrixType = Eigen::Matrix]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:253:94: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_colmajor_times_vector(int, const Scalar*, int, const RhsType&, Scalar*) [with Scalar = double; RhsType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:590:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Block, 10000, 1, 1, 32>; ProductType = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >&, 1>; int LhsRows = 10000; int RhsOrder = 0; int RhsAccess = 32]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Block, 10000, 10000, 1, 32>&; Rhs = const Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >&; Derived = Eigen::Block, 10000, 1, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/MatrixBase.h:246:24: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Flagged&) [with OtherDerived = Eigen::Product, 10000, 10000, 1, 32>&, const Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >&, 1>; Derived = Eigen::Block, 10000, 1, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Block, 10000, 1, 1, 32>; OtherDerived = Eigen::Flagged, 10000, 10000, 1, 32>&, const Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >&, 1>, 0, 6>]' /usr/include/eigen2/Eigen/src/Core/Assign.h:467:55: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Flagged, 10000, 10000, 1, 32>&, const Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >&, 1>, 0, 6>; Derived = Eigen::Block, 10000, 1, 1, 32>]' /usr/include/eigen2/Eigen/src/Core/MapBase.h:177:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/eigen2/Eigen/src/QR/Tridiagonalization.h:284:26: required from 'static void Eigen::Tridiagonalization<_MatrixType>::_compute(Eigen::Tridiagonalization<_MatrixType>::MatrixType&, Eigen::Tridiagonalization<_MatrixType>::CoeffVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::CoeffVectorType = Eigen::Matrix; typename _MatrixType::Scalar = double]' /usr/include/eigen2/Eigen/src/QR/Tridiagonalization.h:79:15: required from 'Eigen::Tridiagonalization<_MatrixType>::Tridiagonalization(const MatrixType&) [with _MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/Tridiagonalization.h:377:24: required from 'static void Eigen::Tridiagonalization<_MatrixType>::decomposeInPlace(Eigen::Tridiagonalization<_MatrixType>::MatrixType&, Eigen::Tridiagonalization<_MatrixType>::DiagonalType&, Eigen::Tridiagonalization<_MatrixType>::SubDiagonalType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::DiagonalType = Eigen::Matrix; typename Eigen::NumTraits::Real = double; Eigen::Tridiagonalization<_MatrixType>::SubDiagonalType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h:207:43: required from 'void Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const MatrixType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::SelfAdjointEigenSolver<_MatrixType>::MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h:75:14: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const MatrixType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::SelfAdjointEigenSolver<_MatrixType>::MatrixType = Eigen::Matrix]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:251:47: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:420:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:421:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h: In instantiation of 'void Eigen::ei_cache_friendly_product_rowmajor_times_vector(const Scalar*, int, const Scalar*, int, ResType&) [with Scalar = double; ResType = Eigen::Matrix]': /usr/include/eigen2/Eigen/src/Core/Product.h:711:52: required from 'static void Eigen::ei_cache_friendly_product_selector::run(DestDerived&, const ProductType&) [with DestDerived = Eigen::Matrix; ProductType = Eigen::Product, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; int LhsOrder = 1; int LhsAccess = 32; int RhsCols = 10000]' /usr/include/eigen2/Eigen/src/Core/Product.h:761:84: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Product&) [with Lhs = const Eigen::Transpose, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&; Rhs = const Eigen::Block, 10000, 10000, 1, 32>&; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/MatrixBase.h:246:24: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::Flagged&) [with OtherDerived = Eigen::Product, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Assign.h:447:123: required from 'static Derived& Eigen::ei_assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Matrix; OtherDerived = Eigen::Flagged, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>, 0, 6>]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:554:64: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set_noalias(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Flagged, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>, 0, 6>; _Scalar = double; int _Rows = 1; int _Cols = 10000; int _Options = 2; int _MaxRows = 1; int _MaxCols = 10000]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:408:19: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/eigen2/Eigen/src/Core/Product.h:298:60: required from 'const typename Eigen::ProductReturnType::Type Eigen::MatrixBase::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Flagged, 10000, 1, 1, 32>, 10000, 1, 1, 32> > >&, const Eigen::Block, 10000, 10000, 1, 32>&, 1>, 0, 6>; Derived = Eigen::CwiseUnaryOp, Eigen::Block, 10000, 1, 1, 32>, 10000, 1, 1, 32> >; typename Eigen::ProductReturnType::Type = Eigen::Product, Eigen::Matrix, 0>]' /usr/include/eigen2/Eigen/src/QR/Tridiagonalization.h:357:58: required from 'Eigen::Tridiagonalization<_MatrixType>::MatrixType Eigen::Tridiagonalization<_MatrixType>::matrixQ() const [with _MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/Tridiagonalization.h:381:21: required from 'static void Eigen::Tridiagonalization<_MatrixType>::decomposeInPlace(Eigen::Tridiagonalization<_MatrixType>::MatrixType&, Eigen::Tridiagonalization<_MatrixType>::DiagonalType&, Eigen::Tridiagonalization<_MatrixType>::SubDiagonalType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::Tridiagonalization<_MatrixType>::DiagonalType = Eigen::Matrix; typename Eigen::NumTraits::Real = double; Eigen::Tridiagonalization<_MatrixType>::SubDiagonalType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h:207:43: required from 'void Eigen::SelfAdjointEigenSolver<_MatrixType>::compute(const MatrixType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::SelfAdjointEigenSolver<_MatrixType>::MatrixType = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/QR/SelfAdjointEigenSolver.h:75:14: required from 'Eigen::SelfAdjointEigenSolver<_MatrixType>::SelfAdjointEigenSolver(const MatrixType&, bool) [with _MatrixType = Eigen::Matrix; Eigen::SelfAdjointEigenSolver<_MatrixType>::MatrixType = Eigen::Matrix]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:251:47: required from here /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:609:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset1 = (FirstAligned && alignmentStep==1?3:1); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/CacheFriendlyProduct.h:610:31: warning: enum constant in boolean context [-Wint-in-bool-context] int offset3 = (FirstAligned && alignmentStep==1?1:3); ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.qm [ 12%] Generating libavogadro_ca@valencia.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ca@valencia.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 12%] Generating libavogadro_cs.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/cs.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 12%] Generating libavogadro_da.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/da.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm [ 12%] Generating libavogadro_de.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/de.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.qm [ 13%] Generating libavogadro_el.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/el.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_da.qm [ 13%] Generating libavogadro_en_AU.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/en_AU.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_de.qm [ 13%] Generating libavogadro_en_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/en_CA.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_el.qm [ 13%] Generating libavogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/en_GB.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.qm [ 13%] Generating libavogadro_es.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/es.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 14%] Linking CXX shared library ../../../../../lib64/libavogadro_OpenQube.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib64/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64: -lQtCore -lQtGui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../../lib64/libavogadro_OpenQube.so.0 ../../../../../lib64/libavogadro_OpenQube.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.qm make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 14%] Built target OpenQube [ 14%] Generating libavogadro_et.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/et.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts [ 14%] Generating libavogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/eu.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 14%] Generating libavogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/fi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_es.qm [ 14%] Generating libavogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/fr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_et.qm [ 14%] Generating libavogadro_gl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/gl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts [ 15%] Generating libavogadro_he.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/he.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 15%] Generating libavogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/hi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.qm [ 15%] Generating libavogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/hu.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_he.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.qm [ 15%] Generating libavogadro_id.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/id.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 15%] Generating libavogadro_it.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/it.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.qm [ 15%] Generating libavogadro_ja.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ja.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_id.qm [ 15%] Generating libavogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/kn.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_it.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.qm [ 15%] Generating libavogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ko.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts [ 15%] Generating libavogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ms.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.qm [ 15%] Generating libavogadro_nb.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/nb.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.qm [ 16%] Generating libavogadro_nl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/nl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 16%] Generating libavogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/oc.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts [ 16%] Generating libavogadro_pl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/pl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.qm [ 16%] Generating libavogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/pt.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.qm [ 16%] Generating libavogadro_pt_BR.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/pt_BR.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.qm [ 16%] Generating libavogadro_ru.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ru.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts [ 16%] Generating libavogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/sk.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.qm [ 16%] Generating libavogadro_sl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/sl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm [ 16%] Generating libavogadro_sq.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/sq.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.qm [ 16%] Generating libavogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/sr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.qm [ 17%] Generating libavogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/sv.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.qm [ 17%] Generating libavogadro_th.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/th.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_th.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_th.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.qm [ 17%] Generating libavogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/tr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.qm [ 17%] Generating libavogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/ug.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.qm [ 17%] Generating libavogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/uk.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_th.qm [ 17%] Generating libavogadro_vi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/vi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... [ 17%] Generating libavogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/zh_CN.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.qm [ 17%] Generating libavogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/libavogadro/zh_TW.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.qm make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 17%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.qm In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:6: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:14: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:14: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iostream:39, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build [ 17%] Linking CXX executable ../../../../../bin/qube cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: -rdynamic ../../../../../lib64/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtTest -lQtCore [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 18%] Built target qube [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/animation.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/animation.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/bond.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/bond.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/atom.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/color.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/color.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cube.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qgraphicsitem.h:45, from /usr/include/QtGui/QGraphicsItem:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/cylinder_p.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qgraphicsitem.h:45, from /usr/include/QtGui/QGraphicsItem:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glhit.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glhit.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/fragment.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/idlist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/idlist.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp: In constructor 'Avogadro::Mesh::Mesh(QObject*)': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/mesh.cpp:38:30: warning: large integer implicitly truncated to unsigned type [-Woverflow] m_lock(new QReadWriteLock) ^ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:131:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:31: /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseUnaryOp, Eigen::NestByValue, Eigen::NestByValue, 3, 3, 1, 32> >, Eigen::Matrix, 0> >, Eigen::NestByValue, 3, 1, 1, 32> > > > >; _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:18: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseUnaryOp, Eigen::NestByValue, Eigen::NestByValue, 3, 3, 1, 32> >, Eigen::Matrix, 0> >, Eigen::NestByValue, 3, 1, 1, 32> > > > >; _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glpainter_p.cpp:792:87: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] _set_selector(other.derived(), typename ei_meta_if::ret()); ^~~~~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/meshgenerator.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:40: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:40: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/molecule.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/glwidget.cpp:32: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/navigate.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/neighborlist.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/painter.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qgraphicsscene.h:45, from /usr/include/QtGui/QGraphicsScene:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qchar.h:45, from /usr/include/QtCore/qstring.h:45, from /usr/include/QtCore/QString:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qchar.h:45, from /usr/include/QtCore/qstring.h:45, from /usr/include/QtCore/QString:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qchar.h:45, from /usr/include/QtCore/qstring.h:45, from /usr/include/QtCore/QString:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/plugin.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitive.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/primitivelist.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/protein.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qthread.h:45, from /usr/include/QtCore/QThread:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/moleculefile.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/readfilethread_p.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/residue.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/sphere_p.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pluginmanager.cpp:32: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textrenderer_p.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:36: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:36: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/zmatrix.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/pythonerror.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythontool_p.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_bond.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/bond.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/color.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/bond.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_bond.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_cube.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonengine_p.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_cube.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/pythonextension_p.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qgraphicsitem.h:45, from /usr/include/QtGui/QGraphicsItem:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_extension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qgraphicsscene.h:45, from /usr/include/QtGui/QGraphicsScene:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qchar.h:45, from /usr/include/QtCore/qstring.h:45, from /usr/include/QtCore/QString:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plugin.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_protein.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/protein.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qthread.h:45, from /usr/include/QtCore/QThread:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_tool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 27%] Linking CXX shared library ../../lib64/libavogadro.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -Wl,-soname,libavogadro.so.1 -o ../../lib64/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64: -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lGLU -lGL -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGLU -lGL cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib64/libavogadro.so.1.2.0 ../../lib64/libavogadro.so.1 ../../lib64/libavogadro.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 27%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 27%] Generating ui_qtaimsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimsettingswidget.ui [ 27%] Generating moc_forceengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters [ 28%] Generating ui_ribbonsettingswidget.h make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonsettingswidget.ui [ 28%] Generating moc_qtaimengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 29%] Generating ui_hbondsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondsettingswidget.ui [ 29%] Generating moc_ribbonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= [ 29%] Generating moc_hbondengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build Scanning dependencies of target forceengine make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target hbondengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target ribbonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/forceengine.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:40: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:40: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Linking CXX shared module ../../../lib64/forceengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Built target forceengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Generating ui_wiresettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wiresettingswidget.ui [ 30%] Generating moc_wireengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx Scanning dependencies of target wireengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 30%] Linking CXX shared module ../../../lib64/ribbonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx [ 30%] Generating ui_sticksettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sticksettingswidget.ui [ 30%] Generating moc_stickengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/wireengine.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 30%] Linking CXX shared module ../../../lib64/hbondengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 30%] Built target hbondengine [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 31%] Linking CXX shared module ../../../lib64/qtaimengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/stickengine.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 31%] Generating ui_cartoonsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonsettingswidget.ui [ 31%] Built target qtaimengine make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 31%] Generating moc_cartoonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters [ 32%] Generating ui_labelsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelsettingswidget.ui [ 32%] Generating moc_labelengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target labelengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 33%] Linking CXX shared module ../../../lib64/stickengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Built target stickengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Generating ui_ringsettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringsettingswidget.ui [ 33%] Generating moc_ringengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/labelengine.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:48: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:48: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/ringengine.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:44, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:51: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:51: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:131:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.h:44, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:18: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/cartoonmeshgenerator.cpp:615:15: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] _set_selector(other.derived(), typename ei_meta_if::ret()); ^~~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 33%] Linking CXX shared module ../../../lib64/ringengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx [ 33%] Generating moc_polygonengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= [ 33%] Linking CXX shared module ../../../lib64/labelengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL Scanning dependencies of target polygonengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 33%] Built target labelengine [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 34%] Linking CXX shared module ../../../lib64/wireengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 35%] Generating ui_spheresettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/spheresettingswidget.ui [ 36%] Generating moc_sphereengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= [ 36%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target sphereengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build [ 37%] Generating ui_surfacesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfacesettingswidget.ui make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 37%] Generating moc_surfaceengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 37%] Linking CXX shared module ../../../lib64/polygonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 37%] Built target polygonengine [ 37%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Linking CXX shared module ../../../lib64/cartoonengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 37%] Built target cartoonengine make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 37%] Generating ui_axessettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axessettingswidget.ui [ 38%] Generating moc_axesengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 38%] Linking CXX shared module ../../../lib64/surfaceengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 38%] Built target surfaceengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend [ 38%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Generating ui_dipolesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipolesettingswidget.ui [ 38%] Generating moc_dipoleengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/axesengine.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Linking CXX shared module ../../../lib64/axesengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 39%] Linking CXX shared module ../../../lib64/sphereengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 39%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Generating moc_simplewireengine.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Built target sphereengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Generating qrc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name selectrotatetool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.qrc [ 39%] Generating moc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ Scanning dependencies of target selectrotatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 39%] Linking CXX shared module ../../../lib64/dipoleengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Built target dipoleengine make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 39%] Generating qrc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autorotatetool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.qrc [ 40%] Generating moc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:41: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:41: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:28: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 40%] Linking CXX shared module ../../../lib64/simplewireengine.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Generating qrc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name clickmeasuretool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.qrc [ 40%] Generating moc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Generating qrc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name bondcentrictool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.qrc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= [ 40%] Generating moc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters Scanning dependencies of target clickmeasuretool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Generating moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib64/autorotatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 40%] Built target autorotatetool [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 40%] Linking CXX shared module ../../../lib64/selectrotatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Linking CXX shared module ../../../lib64/clickmeasuretool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 42%] Built target selectrotatetool [ 42%] Generating qrc_autoopttool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autoopttool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.qrc make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 42%] Generating moc_autoopttool.cxx [ 42%] Generating qrc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name drawtool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.qrc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters [ 42%] Built target clickmeasuretool make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend [ 43%] Generating moc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Generating qrc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name aligntool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.qrc [ 43%] Generating moc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target autoopttool Scanning dependencies of target drawtool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 43%] Linking CXX shared module ../../../lib64/bondcentrictool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Generating qrc_manipulatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name manipulatetool -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.qrc [ 43%] Generating moc_manipulatetool.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:33: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawtool.cpp:30: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 43%] Generating ui_manipulatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatesettingswidget.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:26: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:26: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp: In member function 'void Avogadro::AlignTool::align()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized] Vector3d axis; ^~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: '*((void*)& axis +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/aligntool.cpp:256:16: warning: '*((void*)& axis +16)' may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Linking CXX shared module ../../../lib64/aligntool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 43%] Generating moc_gl2psextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] postCommandEnd(0) {} ^ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2psextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 44%] Linking CXX shared module ../../../lib64/autoopttool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.ui [ 44%] Generating moc_supercellextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 44%] Generating moc_supercelldialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -DNDEBUG -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.h:39, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:36: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Linking CXX shared module ../../../lib64/drawtool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Built target drawtool make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 44%] Generating ui_shaderdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderdialog.ui [ 45%] Generating moc_shaderextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercellextension.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c: In function 'gl2psPrintPrimitives': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2304:11: warning: 'ounits' may be used uninitialized in this function [-Wmaybe-uninitialized] gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ounits, pattern, factor, 1, flag); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2247:49: note: 'ounits' was declared here GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2304:11: warning: 'ofactor' may be used uninitialized in this function [-Wmaybe-uninitialized] gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ounits, pattern, factor, 1, flag); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps/gl2ps.c:2247:40: note: 'ofactor' was declared here GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/shaderextension.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 46%] Linking CXX shared module ../../../lib64/gl2psextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Built target gl2psextension [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib64/manipulatetool.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Built target manipulatetool [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Generating ui_fileimportdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportdialog.ui [ 46%] Generating moc_h2methylextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters [ 46%] Generating moc_fileimportextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target fileimportextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib64/supercellextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 46%] Linking CXX shared module ../../../lib64/shaderextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lGLEW make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Built target supercellextension [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend [ 46%] Generating ui_molecularpropdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropdialog.ui make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 46%] Generating moc_propextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 46%] Generating moc_molecularpropextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters [ 47%] Generating __/tools/moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 47%] Generating moc_propmodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build Scanning dependencies of target propextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Linking CXX shared module ../../../lib64/fileimportextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Generating moc_invertchiralextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp [ 47%] Linking CXX shared module ../../../lib64/h2methylextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 47%] Generating qrc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name cartesianextension -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.qrc [ 47%] Generating moc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 48%] Generating ui_cartesianeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianeditor.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cmath:41, from /usr/include/c++/7/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/cartesianextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/../tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/../tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/openbabel-2.0/openbabel/mol.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 48%] Linking CXX shared module ../../../lib64/invertchiralextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 48%] Linking CXX shared module ../../../lib64/molecularpropextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 48%] Built target invertchiralextension [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cmath:41, from /usr/include/c++/7/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 48%] Built target molecularpropextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 49%] Generating ui_pythonterminalwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminalwidget.ui [ 49%] Generating moc_pythonterminal.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters [ 49%] Generating moc_highlighter.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/propextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Linking CXX shared module ../../../lib64/cartesianextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx [ 49%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Generating ui_conformersearchdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.ui [ 49%] Generating moc_forcefieldextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 49%] Generating moc_forcefielddialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters [ 49%] Generating moc_constraintsdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx [ 49%] Generating moc_constraintsmodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cmath:41, from /usr/include/c++/7/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Generating moc_conformersearchdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 49%] Generating ui_forcefielddialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.ui In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:38, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 49%] Generating ui_constraintsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cmath:41, from /usr/include/c++/7/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib64/propextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 50%] Built target propextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 51%] Generating moc_selectextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qsyntaxhighlighter.h:45, from /usr/include/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/selectextension.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib64/selectextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 51%] Built target selectextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Generating ui_insertpeptidedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptidedialog.ui [ 52%] Generating moc_insertpeptideextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertpeptideextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:27, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/bits/stl_algobase.h:59, from /usr/include/c++/7/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx [ 52%] Generating moc_hydrogensextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qsyntaxhighlighter.h:45, from /usr/include/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Linking CXX shared module ../../../lib64/insertpeptideextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 52%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnadialog.ui [ 53%] Generating moc_insertdnaextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 53%] Linking CXX shared module ../../../lib64/pythonterminal.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 53%] Built target pythonterminal make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 54%] Generating moc_networkfetchextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 54%] Linking CXX shared module ../../../lib64/forcefieldextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertdnaextension.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 54%] Built target forcefieldextension make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 55%] Generating qrc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name animationextension -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.qrc [ 55%] Generating moc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters [ 55%] Generating moc_animationdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/networkfetchextension.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 55%] Generating ui_animationdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Linking CXX shared module ../../../lib64/insertdnaextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 55%] Built target insertdnaextension [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 55%] Linking CXX shared module ../../../lib64/networkfetchextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 55%] Built target networkfetchextension make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 55%] Generating ui_povraydialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.ui [ 56%] Generating moc_povrayextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters [ 56%] Generating moc_povraydialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target povrayextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Linking CXX shared module ../../../lib64/hydrogensextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 56%] Linking CXX shared module ../../../lib64/animationextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 [ 56%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 56%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.ui [ 56%] Generating moc_insertfragmentextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters [ 56%] Generating moc_insertfragmentdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 56%] Generating moc_sortfiltertreeproxymodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 57%] Built target animationextension [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertfragmentdialog.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 57%] Generating ui_vrmldialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. [ 57%] Generating moc_vrmlextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters [ 57%] Generating moc_vrmldialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target vrmlextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/qabstractitemmodel.h:45, from /usr/include/QtGui/qabstractproxymodel.h:45, from /usr/include/QtGui/qsortfilterproxymodel.h:45, from /usr/include/QtGui/QSortFilterProxyModel:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:5, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:8: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:8: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.h:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/qabstractitemmodel.h:45, from /usr/include/QtGui/qabstractproxymodel.h:45, from /usr/include/QtGui/qsortfilterproxymodel.h:45, from /usr/include/QtGui/QSortFilterProxyModel:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Linking CXX shared module ../../../lib64/insertfragmentextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 58%] Built target insertfragmentextension make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 58%] Generating ui_symmetrydialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetrydialog.ui [ 58%] Generating moc_symmetryextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= Scanning dependencies of target symmetryextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/symmetry -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Linking CXX shared module ../../../lib64/vrmlextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 58%] Built target vrmlextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 58%] Generating ui_ceviewoptionswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 58%] Generating moc_crystallographyextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters [ 58%] Generating moc_crystalpastedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters [ 58%] Generating ui/moc_ceabstractdockwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 58%] Generating ui/moc_ceabstracteditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters [ 58%] Generating ui/moc_cecoordinateeditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters [ 58%] Generating ui/moc_cematrixeditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 58%] Generating ui/moc_ceparametereditor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters [ 59%] Generating ui/moc_ceslabbuilder.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 59%] Generating ui/moc_cetranslatewidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 59%] Generating ui/moc_ceviewoptionswidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters [ 59%] Generating ui_crystalpastedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.ui [ 59%] Generating ui_cecoordinateeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui [ 59%] Generating ui_cematrixeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 59%] Generating ui_ceparametereditor.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui [ 59%] Generating ui_ceslabbuilder.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 59%] Generating ui_cetranslatewidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= Scanning dependencies of target crystallographyextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cstddef:49, from /usr/include/eigen2/Eigen/Core:55, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 60%] Linking CXX shared module ../../../../lib64/symmetryextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL ../../../../lib64/libmsym.so make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 60%] Built target symmetryextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 60%] Generating ui_tab_cd.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_cd.ui [ 60%] Generating moc_spectraextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 60%] Generating moc_spectradialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 60%] Generating moc_spectratype.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters [ 60%] Generating moc_abstract_ir.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters [ 60%] Generating moc_ir.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 60%] Generating moc_nmr.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters [ 60%] Generating moc_dos.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 61%] Generating moc_uv.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters [ 61%] Generating moc_cd.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters [ 61%] Generating moc_raman.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters [ 61%] Generating ui_spectradialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.ui [ 61%] Generating ui_tab_ir_raman.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_ir_raman.ui [ 61%] Generating ui_tab_nmr.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_nmr.ui [ 61%] Generating ui_tab_dos.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_dos.ui [ 61%] Generating ui_tab_uv.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/tab_uv.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:47: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:47: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:131:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:18: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 2; int _MaxRows = 3; int _MaxCols = 1]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:1997:26: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] _set_selector(other.derived(), typename ei_meta_if::ret()); ^~~~~~~~~~ /usr/include/eigen2/Eigen/src/Core/Matrix.h: In instantiation of 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::_set(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = double; int _Rows = 3; int _Cols = 3; int _Options = 2; int _MaxRows = 3; int _MaxCols = 3]': /usr/include/eigen2/Eigen/src/Core/Matrix.h:283:18: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Product&, const Eigen::Matrix&, 0>; _Scalar = double; int _Rows = 3; int _Cols = 3; int _Options = 2; int _MaxRows = 3; int _MaxCols = 3]' /usr/include/eigen2/Eigen/src/Core/Product.h:310:20: required from 'Derived& Eigen::MatrixBase::operator*=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix]' /usr/include/eigen2/Eigen/src/Core/Matrix.h:296:5: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator*=(const Other&) [with Other = Eigen::Matrix; _Scalar = double; int _Rows = 3; int _Cols = 3; int _Options = 2; int _MaxRows = 3; int _MaxCols = 3]' /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:1783:16: required from here /usr/include/eigen2/Eigen/src/Core/Matrix.h:533:58: warning: enum constant in boolean context [-Wint-in-bool-context] [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qhash.h:45, from /usr/include/QtCore/QHash:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../ceundo.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/dos.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/uv.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../ceundo.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:31: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/cd.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/raman.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/../ceundo.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:24: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:24: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qhash.h:45, from /usr/include/QtCore/QHash:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qhash.h:45, from /usr/include/QtCore/QHash:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qhash.h:45, from /usr/include/QtCore/QHash:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/crystallography -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Linking CXX shared module ../../../../lib64/crystallographyextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL spglib/libspglib.a [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qhash.h:45, from /usr/include/QtCore/QHash:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 65%] Built target crystallographyextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 66%] Generating ui_vibrationwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.ui [ 66%] Generating moc_vibrationextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 66%] Generating moc_vibrationwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Linking CXX shared module ../../../../lib64/spectraextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 67%] Built target spectraextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 67%] Generating ui_orbitalsettingsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui [ 67%] Generating moc_orbitalextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters [ 67%] Generating moc_orbitalsettingsdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters [ 67%] Generating moc_orbitaltablemodel.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters [ 67%] Generating moc_orbitalwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 67%] Generating moc_vdwsurface.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters [ 67%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters [ 68%] Generating moc_htmldelegate.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters [ 68%] Generating ui_orbitalwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.ui In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= Scanning dependencies of target orbitalextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Linking CXX shared module ../../../../lib64/vibrationextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 68%] Built target vibrationextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 68%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.ui [ 68%] Generating moc_surfaceextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters [ 68%] Generating moc_surfacedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:21: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qabstractitemdelegate.h:45, from /usr/include/QtGui/qstyleditemdelegate.h:45, from /usr/include/QtGui/QStyledItemDelegate:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Linking CXX shared module ../../../../lib64/surfaceextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel [ 70%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 70%] Built target surfaceextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 70%] Generating ui_swcntbuilderwidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui [ 70%] Generating moc_swcntbuilderextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters [ 70%] Generating moc_swcntbuilderwidget.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters [ 71%] Generating moc_avotubegen.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/QIODevice:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/surfaces -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qabstractitemdelegate.h:45, from /usr/include/QtGui/qstyleditemdelegate.h:45, from /usr/include/QtGui/QStyledItemDelegate:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Linking CXX shared module ../../../../lib64/orbitalextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 71%] Built target orbitalextension make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 71%] Generating moc_qtaimextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qdebug.h:45, from /usr/include/QtCore/QDebug:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:20: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/cmath:41, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdockwidget.h:45, from /usr/include/QtGui/QDockWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:13, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/swcntbuilder -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 72%] Linking CXX shared module ../../../../lib64/swcntbuilderextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL tubegen/libtubegen.a make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 72%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 72%] Generating ui_gamessefpmatchdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui [ 73%] Generating moc_inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters [ 73%] Generating moc_gamessextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters [ 73%] Generating moc_gamessinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters [ 73%] Generating moc_gamesshighlighter.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters [ 73%] Generating moc_gamessefpmatchdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters [ 73%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qdebug.h:45, from /usr/include/QtCore/QDebug:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qdebug.h:45, from /usr/include/QtCore/QDebug:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/QtGlobal:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Cholesky:34:0, from /usr/include/eigen2/Eigen/QR:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Cholesky:34:0, from /usr/include/eigen2/Eigen/QR:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:30: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/istream:38, from /usr/include/c++/7/sstream:38, from /usr/include/c++/7/complex:45, from /usr/include/eigen2/Eigen/Core:58, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qdebug.h:45, from /usr/include/QtCore/QDebug:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 73%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qalgorithms.h:45, from /usr/include/QtCore/qdebug.h:45, from /usr/include/QtCore/QDebug:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.h:107, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:138: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/iostream:38, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qsyntaxhighlighter.h:45, from /usr/include/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Linking CXX shared module ../../../../lib64/qtaimextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 75%] Built target qtaimextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 75%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui [ 75%] Generating moc_inputfileextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters [ 76%] Generating moc_abinitinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters [ 76%] Generating moc_daltoninputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters [ 76%] Generating moc_gamessukinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters [ 76%] Generating moc_gaussianinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters [ 76%] Generating moc_molproinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters [ 76%] Generating moc_mopacinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters [ 76%] Generating moc_nwcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters [ 76%] Generating moc_psi4inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters [ 76%] Generating moc_qcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters [ 76%] Generating moc_teracheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters [ 77%] Generating moc_lammpsinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters [ 77%] Generating ui_abinitinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui [ 77%] Generating ui_gaussianinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui [ 77%] Generating ui_daltoninputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui [ 77%] Generating ui_gamessukinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui [ 77%] Generating ui_molproinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.ui [ 77%] Generating ui_mopacinputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui [ 77%] Generating ui_nwcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui [ 77%] Generating ui_psi4inputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui [ 77%] Generating ui_qcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui [ 78%] Generating ui_teracheminputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/qprocess.h:45, from /usr/include/QtCore/QProcess:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtGui/qsyntaxhighlighter.h:45, from /usr/include/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 78%] Linking CXX shared module ../../../../lib64/gamessextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 78%] Built target gamessextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 78%] Generating ui_orcaspectra.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.ui [ 78%] Generating moc_orcaextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters [ 79%] Generating moc_orcainputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters [ 79%] Generating moc_orcaanalysedialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters [ 79%] Generating moc_orcaspectra.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters [ 79%] Generating ui_orcainputdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. [ 79%] Generating ui_orcaanalysedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= Scanning dependencies of target orcaextension make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:35, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:35: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/qprocess.h:45, from /usr/include/QtCore/QProcess:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:43: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:43: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtGui/qwidget.h:47, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp: In member function 'QString Avogadro::OrcaAnalyseDialog::readOutputFile()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:471:10: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] bool virtualAtoms = false; ^~~~~~~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:26, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/orca/orcadata.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcadata.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:35, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcadata.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Linking CXX shared module ../../../../lib64/orcaextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 81%] Built target orcaextension make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 81%] Generating moc_distancecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/distancecolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/qprocess.h:45, from /usr/include/QtCore/QProcess:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Linking CXX shared module ../../../lib64/distancecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 81%] Built target distancecolor [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp [ 81%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qiodevice.h:46, from /usr/include/QtCore/qprocess.h:45, from /usr/include/QtCore/QProcess:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Generating moc_chargecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp [ 82%] Linking CXX shared module ../../../lib64/povrayextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Built target povrayextension make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Generating moc_customcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/chargecolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/customcolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 82%] Linking CXX shared module ../../../lib64/chargecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 82%] Linking CXX shared module ../../../lib64/customcolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Built target chargecolor make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx [ 82%] Generating moc_smartscolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 82%] Generating moc_atomindexcolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters Scanning dependencies of target smartscolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp Scanning dependencies of target atomindexcolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 84%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/smartscolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/atomindexcolor.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 84%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 84%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 84%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 84%] Linking CXX shared module ../../../lib64/atomindexcolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 84%] Built target atomindexcolor make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 84%] Generating ui_residuecolorsettings.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolorsettings.ui [ 84%] Generating moc_residuecolor.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend Scanning dependencies of target residuecolor make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Generating moleculelist.moc [ 85%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp [ 85%] Linking CXX shared module ../../../../lib64/inputfileextension.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../../lib64/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Linking CXX shared module ../../../lib64/smartscolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL Scanning dependencies of target python-module make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/animation.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/animation.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target smartscolor make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculefiletest.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Scanning dependencies of target moleculefiletest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/build [ 85%] Built target inputfileextension make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculetest.dir/DependInfo.cmake --color= [ 85%] Building CXX object libavogadro/tests/CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculefiletest.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qabstracteventdispatcher.h:45, from /usr/include/QtCore/QtCore:3, from /usr/include/QtTest/QtTest:3, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculefiletest.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target moleculetest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/moleculetest.dir/moleculetest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculetest.dir/moleculetest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qabstracteventdispatcher.h:45, from /usr/include/QtCore/QtCore:3, from /usr/include/QtTest/QtTest:3, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/residue.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/colors/residuecolor.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/moleculefile.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculefiletest.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 85%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Linking CXX executable ../../bin/moleculetest cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculetest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/moleculetest.dir/moleculetest.cpp.o -o ../../bin/moleculetest -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target moleculetest make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/neighborlisttest.dir/DependInfo.cmake --color= Scanning dependencies of target neighborlisttest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/neighborlisttest.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qabstracteventdispatcher.h:45, from /usr/include/QtCore/QtCore:3, from /usr/include/QtTest/QtTest:3, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/neighborlisttest.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 85%] Linking CXX shared module ../../../lib64/residuecolor.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: ../../../lib64/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGLU -lGL [ 85%] Linking CXX executable ../../bin/moleculefiletest cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculefiletest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -o ../../bin/moleculefiletest -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target residuecolor [ 85%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/atom.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target moleculefiletest make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculebench.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebench make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/moleculebench.dir/moleculebench.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/moleculebench.dir/moleculebench.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculebench.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qabstracteventdispatcher.h:45, from /usr/include/QtCore/QtCore:3, from /usr/include/QtTest/QtTest:3, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculebench.cpp:28: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/neighborlisttest.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/animation.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/animation.cpp:5: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 85%] Linking CXX executable ../../bin/neighborlisttest cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/neighborlisttest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -o ../../bin/neighborlisttest -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target neighborlisttest make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/drawcommandtest.dir/DependInfo.cmake --color= Scanning dependencies of target drawcommandtest make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Building CXX object libavogadro/tests/CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.2.0/testfiles/\" -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen2 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qabstracteventdispatcher.h:45, from /usr/include/QtCore/QtCore:3, from /usr/include/QtTest/QtTest:3, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculebench.cpp:30: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 85%] Linking CXX executable ../../bin/moleculebench cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculebench.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/moleculebench.dir/moleculebench.cpp.o -o ../../bin/moleculebench -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/drawcommandtest.cpp:33:0: /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp: In constructor 'Avogadro::AddBondDrawCommandPrivate::AddBondDrawCommandPrivate()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] postCommandEnd(0) {} ^ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/../src/tools/drawcommand.cpp:533:53: warning: large integer implicitly truncated to unsigned type [-Woverflow] make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Built target moleculebench make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 85%] Generating avogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/zh_TW.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.qm [ 85%] Generating aboutdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/aboutdialog.moc_parameters [ 85%] Generating addenginedialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/addenginedialog.moc_parameters [ 85%] Generating application.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/application.moc_parameters [ 85%] Generating detachedview.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/detachedview.moc_parameters [ 85%] Generating enginecolorswidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters [ 85%] Generating engineitemdelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters [ 85%] Generating engineitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/engineitemmodel.moc_parameters [ 86%] Generating enginelistview.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/enginelistview.moc_parameters [ 86%] Generating engineprimitiveswidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters [ 86%] Generating engineviewwidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/engineviewwidget.moc_parameters [ 86%] Generating flattabwidget.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/flattabwidget.moc_parameters [ 86%] Generating glgraphicsview.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/glgraphicsview.moc_parameters [ 86%] Generating importdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/importdialog.moc_parameters [ 86%] Generating mainwindow.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/mainwindow.moc_parameters [ 86%] Generating pluginitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters [ 86%] Generating pluginlistview.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/pluginlistview.moc_parameters [ 86%] Generating pluginsettings.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/pluginsettings.moc_parameters [ 87%] Generating primitiveitemmodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters [ 87%] Generating primitivetreeview.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/primitivetreeview.moc_parameters [ 87%] Generating projecttreeeditor.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters [ 87%] Generating projecttreemodel.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/projecttreemodel.moc_parameters [ 87%] Generating projecttreemodeldelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters [ 87%] Generating savedialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/savedialog.moc_parameters [ 87%] Generating settingsdialog.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/settingsdialog.moc_parameters [ 87%] Generating atomdelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/atomdelegate.moc_parameters [ 87%] Generating bonddelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/bonddelegate.moc_parameters [ 87%] Generating labeldelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/labeldelegate.moc_parameters [ 88%] Generating moleculedelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/moleculedelegate.moc_parameters [ 88%] Generating residuedelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/residuedelegate.moc_parameters [ 88%] Generating selectiondelegate.moc cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 @/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/selectiondelegate.moc_parameters [ 88%] Generating ui_addenginedialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_addenginedialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.ui [ 88%] Generating ui_enginecolorswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_enginecolorswidget.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.ui [ 88%] Generating ui_engineprimitiveswidget.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.ui [ 88%] Generating ui_importdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_importdialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.ui [ 88%] Generating ui_mainwindow.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_mainwindow.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.ui [ 88%] Generating ui_pluginsettings.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_pluginsettings.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.ui [ 89%] Generating ui_projecttreeeditor.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_projecttreeeditor.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.ui [ 89%] Generating ui_settingsdialog.h cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_settingsdialog.h /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.ui [ 89%] Generating qrc_avogadro.cxx cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/rcc -name avogadro -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/qrc_avogadro.cxx /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/avogadro.qrc [ 89%] Generating avogadro_af.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/af.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_af.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_af.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_af.qm [ 89%] Generating avogadro_ar.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ar.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ar.qm [ 89%] Generating avogadro_bg.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/bg.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_bg.qm [ 89%] Generating avogadro_ca.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ca.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca.qm [ 89%] Generating avogadro_ca@valencia.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ca@valencia.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.qm [ 89%] Generating avogadro_cs.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/cs.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_cs.qm [ 89%] Generating avogadro_da.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/da.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_da.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_da.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_da.qm [ 90%] Generating avogadro_de.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/de.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_de.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_de.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_de.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_de.qm [ 90%] Generating avogadro_el.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/el.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_el.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_el.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_el.qm [ 90%] Generating avogadro_en_AU.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_AU.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts [ 90%] Linking CXX executable ../../bin/drawcommandtest cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawcommandtest.dir/link.txt --verbose=1 cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -o ../../bin/drawcommandtest -L/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -Wl,-rpath,/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.2.0 -lQtCore Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.qm [ 90%] Generating avogadro_en_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_CA.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.qm [ 90%] Generating avogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/en_GB.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 90%] Built target drawcommandtest [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/bond.cpp [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/bond.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/atom.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/color.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/color.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/bond.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:4: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:4: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/camera.cpp:2: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/cube.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/cube.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/color.cpp:6: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:4: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:5: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/elementtranslator.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/cube.cpp:5: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:10: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:10: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:6: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:10: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/eigen.cpp:6: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 90%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/engine.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/engine.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/extension.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/extension.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/fragment.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/engine.cpp:6: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/fragment.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/extension.cpp:5: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/main.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/python2.7/Python.h:19, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/main.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/mesh.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:13: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:13: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp: In function 'void export_GLWidget()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:53:55: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] class_ >("GLWidget") ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/mesh.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/mesh.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/meshgenerator.h:32, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/meshgenerator.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/python2.7/Python.h:19, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp: In function 'void export_Molecule()': /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:88:12: warning: 'template class std::auto_ptr' is deprecated [-Wdeprecated-declarations] std::auto_ptr >("Molecule", no_init) ^~~~~~~~ In file included from /usr/include/c++/7/memory:80:0, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/molecule.cpp:2: /usr/include/c++/7/bits/unique_ptr.h:51:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/moleculefile.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculefile.cpp:5: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/moleculelist.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 91%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painter.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painter.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:4: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:4: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/navigate.cpp:2: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/neighborlist.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/periodictableview.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painter.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/painterdevice.h:28, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:8: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:2: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:8: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:14, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:13, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/painterdevice.cpp:2: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/plugin.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/plugin.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitive.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitive.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/pluginmanager.cpp:8: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitive.cpp:5: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qlist.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qlist.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qstring.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/python2.7/Python.h:19, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qstring.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/primitivelist.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/qlist.cpp:8: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/residue.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/residue.cpp:2: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/sip.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/sip.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/sip.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/residue.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/sip.cpp:7: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/swig.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/swig.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/swig.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/std_vector.cpp:8: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/tool.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/tool.cpp:3: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen2 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.2.0/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/limits.h:26, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:194, from /usr/lib/gcc/aarch64-redhat-linux/7/include/syslimits.h:7, from /usr/lib/gcc/aarch64-redhat-linux/7/include/limits.h:34, from /usr/include/python2.7/Python.h:19, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp:1: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/swig.cpp:4: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.qm [ 93%] Generating avogadro_es.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/es.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_es.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 93%] Generating avogadro_et.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/et.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_et.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_et.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_es.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_es.qm [ 93%] Generating avogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/eu.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_et.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_et.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_eu.qm [ 93%] Generating avogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts [ 93%] Generating avogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fi.qm [ 93%] Generating avogadro_gl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/gl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts [ 94%] Generating avogadro_fr_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/fr_CA.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_fr_CA.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_gl.qm [ 94%] Generating avogadro_he.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/he.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_he.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_he.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 94%] Generating avogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_he.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_he.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 94%] Generating avogadro_hr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 94%] Generating avogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/hu.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hr.qm [ 94%] Generating avogadro_id.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/id.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_id.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_id.ts [ 94%] Generating avogadro_it.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/it.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_id.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_id.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_it.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_it.qm [ 94%] Generating avogadro_ja.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ja.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts [ 94%] Generating avogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/kn.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ja.qm [ 95%] Generating avogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ko.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ko.qm [ 95%] Generating avogadro_nb.qm [ 95%] Generating avogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ms.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/nb.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nb.qm [ 95%] Generating avogadro_nl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/nl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_nl.qm [ 95%] Generating avogadro_pl.qm [ 95%] Generating avogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/oc.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pl.qm [ 95%] Generating avogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pt.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts [ 95%] Generating avogadro_pt_BR.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/pt_BR.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.qm [ 95%] Generating avogadro_ru.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ru.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts [ 96%] Generating avogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sk.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ru.qm [ 96%] Generating avogadro_sl.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sl.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sl.qm [ 96%] Generating avogadro_sq.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sq.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts [ 96%] Generating avogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sq.qm Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 96%] Generating avogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/sv.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 96%] Generating avogadro_ta.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ta.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts [ 96%] Generating avogadro_te.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/te.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_te.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_te.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ta.qm Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 96%] Generating avogadro_th.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/th.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_th.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_th.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_th.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_te.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_te.qm [ 96%] Generating avogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/tr.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts [ 96%] Generating avogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/ug.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_tr.qm [ 97%] Generating avogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/uk.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/tool.cpp:6: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... [ 97%] Generating avogadro_vi.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/vi.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_vi.qm [ 97%] Generating avogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.2.0/i18n/avogadro/zh_CN.po -o /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/builddir/build/BUILD/avogadro-1.2.0/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.2.0 /builddir/build/BUILD/avogadro-1.2.0/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-app make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.cpp [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qdialog.h:45, from /usr/include/QtGui/QDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.h:23, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_addenginedialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.2.0/libavogadro/src/python/toolgroup.cpp:6: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qcoreapplication.h:45, from /usr/include/QtGui/qapplication.h:45, from /usr/include/QtGui/QApplication:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/addenginedialog.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:23: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qcoreapplication.h:45, from /usr/include/QtGui/qapplication.h:45, from /usr/include/QtGui/QApplication:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:22: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:23: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qcoreapplication.h:45, from /usr/include/QtGui/qapplication.h:45, from /usr/include/QtGui/QApplication:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/application.cpp:22: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qundostack.h:45, from /usr/include/QtGui/QUndoCommand:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/detachedview.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/editcommands.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtGui/qabstractitemdelegate.h:45, from /usr/include/QtGui/qstyleditemdelegate.h:45, from /usr/include/QtGui/QStyledItemDelegate:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Linking CXX shared module ../../../lib64/Avogadro.so cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed -shared -o ../../../lib64/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/sip.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: -lstdc++ ../../../lib64/libavogadro.so.1.2.0 -lQtOpenGL -lQtGui -lQtTest -lQtCore -lpython2.7 -lopenbabel -lboost_python In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginecolorswidget.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemdelegate.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/qabstractitemmodel.h:45, from /usr/include/QtCore/QModelIndex:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [ 98%] Built target python-module [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qframe.h:45, from /usr/include/QtGui/qabstractscrollarea.h:45, from /usr/include/QtGui/qabstractitemview.h:45, from /usr/include/QtGui/qlistview.h:45, from /usr/include/QtGui/QListView:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/QWidget:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineitemmodel.cpp:28: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/enginelistview.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineprimitiveswidget.cpp:30: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/QObject:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qmetatype.h:45, from /usr/include/QtGui/qgraphicsview.h:45, from /usr/include/QtGui/QGraphicsView:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/engineviewwidget.cpp:30: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_importdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:34, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/glgraphicsview.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iterator:64, from /usr/include/QtCore/qlist.h:50, from /usr/include/QtCore/qvariant.h:47, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_importdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iterator:64, from /usr/include/QtCore/qlist.h:50, from /usr/include/QtCore/qvariant.h:47, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_importdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/importdialog.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:51: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:51: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:51: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/main.cpp:27: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.cpp In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:27: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qobject.h:48, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.cpp:24: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.cpp [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginlistview.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/qabstractitemmodel.h:45, from /usr/include/QtCore/QAbstractItemModel:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtGui/qwindowdefs.h:45, from /usr/include/QtGui/qwidget.h:46, from /usr/include/QtGui/qframe.h:45, from /usr/include/QtGui/qabstractscrollarea.h:45, from /usr/include/QtGui/qabstractitemview.h:45, from /usr/include/QtGui/qtreeview.h:45, from /usr/include/QtGui/QTreeView:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitiveitemmodel.cpp:31: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/primitivetreeview.cpp:29: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:47, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:48, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.cpp:26: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.cpp:25: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qchar.h:45, from /usr/include/QtCore/qstring.h:45, from /usr/include/QtCore/qdir.h:45, from /usr/include/QtGui/qfiledialog.h:45, from /usr/include/QtGui/QFileDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qatomic.h:45, from /usr/include/QtCore/qvariant.h:45, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /usr/include/eigen2/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:23: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:23: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qdir.h:45, from /usr/include/QtGui/qfiledialog.h:45, from /usr/include/QtGui/QFileDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:23: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/QtCore/qstring.h:54, from /usr/include/QtCore/qdir.h:45, from /usr/include/QtGui/qfiledialog.h:45, from /usr/include/QtGui/QFileDialog:1, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/savedialog.cpp:22: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projecttreeeditor.h:48, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:27: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h: At global scope: /usr/include/eigen2/Eigen/src/Array/Functors.h:266:31: warning: 'template class std::binder2nd' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iterator:64, from /usr/include/QtCore/qlist.h:50, from /usr/include/QtCore/qvariant.h:47, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/c++/7/backward/binders.h:143:11: note: declared here class binder2nd ^~~~~~~~~ In file included from /usr/include/eigen2/Eigen/Array:28:0, from /usr/include/eigen2/Eigen/Geometry:8, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/mainwindow.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:29: /usr/include/eigen2/Eigen/src/Array/Functors.h:270:31: warning: 'template class std::binder1st' is deprecated [-Wdeprecated-declarations] struct ei_functor_traits > ^~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_function.h:1127:0, from /usr/include/c++/7/string:48, from /usr/include/c++/7/bits/locale_classes.h:40, from /usr/include/c++/7/bits/ios_base.h:41, from /usr/include/c++/7/ios:42, from /usr/include/c++/7/ostream:38, from /usr/include/c++/7/iterator:64, from /usr/include/QtCore/qlist.h:50, from /usr/include/QtCore/qvariant.h:47, from /usr/include/QtCore/QVariant:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.h:28, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/settingsdialog.cpp:25: /usr/include/c++/7/backward/binders.h:108:11: note: declared here class binder1st ^~~~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /usr/include/QtCore/qnamespace.h:45, from /usr/include/QtCore/qobjectdefs.h:45, from /usr/include/QtCore/qobject.h:47, from /usr/include/QtCore/qtranslator.h:45, from /usr/include/QtCore/QTranslator:1, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/global.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:25, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DENABLE_THREADED_GL -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.2.0/avogadro/src -I/usr/include/openbabel-2.0 -I/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src -I/usr/include/eigen2 -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/c++/7/aarch64-redhat-linux/bits/os_defines.h:39:0, from /usr/include/c++/7/aarch64-redhat-linux/bits/c++config.h:525, from /usr/include/c++/7/utility:68, from /usr/include/c++/7/algorithm:60, from /usr/include/QtCore/qglobal.h:68, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:180:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/eigen2/Eigen/Core:103:0, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:36, from /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.h:26, from /builddir/build/BUILD/avogadro-1.2.0/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/eigen2/Eigen/src/Core/util/Memory.h: In function 'Integer Eigen::ei_alignmentOffset(const Scalar*, Integer)': /usr/include/eigen2/Eigen/src/Core/util/Memory.h:232:51: warning: typedef 'Packet' locally defined but not used [-Wunused-local-typedefs] typedef typename ei_packet_traits::type Packet; ^~~~~~ [100%] Linking CXX executable ../../bin/avogadro cd /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -I../../libavogadro/src -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -Wl,--as-needed CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -L/usr/usr/lib64 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/lib64: -rdynamic -lQtOpenGL -lQtGui -lQtTest -lQtNetwork -lQtCore -lopenbabel ../../lib64/libavogadro.so.1.2.0 -lX11 -lboost_python make[2]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' [100%] Built target avogadro-app make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ayZmZ2 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 ++ dirname /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 + cd avogadro-1.2.0 + make install/fast DESTDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 -C aarch64-redhat-linux-gnu make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/AvogadroConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/AvogadroConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/AvogadroUse.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/cmake/FindEigen2.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/cmake/FindEigen3.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/cmake/FindGLEW.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/toolgroup.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/tool.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/undosequence.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/zmatrix.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/pythoninterpreter.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/pythonscript.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/avogadro/pythonerror.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro.so.1.2.0 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro.so.1 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro.so.1.2.0" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ar.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_bg.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_bs.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ca.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ca@valencia.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_cs.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_da.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_de.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_el.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_en_AU.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_en_CA.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_en_GB.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_es.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_et.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_eu.qm -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ja.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_kn.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ko.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ms.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_nb.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_nl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_oc.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_pl.qm -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_th.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_tr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_ug.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_uk.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_vi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_zh_CN.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/libavogadro_zh_TW.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/AvogadroTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/AvogadroTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/labelengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/labelengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/wireengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/wireengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/hbondengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/hbondengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/forceengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/forceengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/sphereengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/sphereengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/stickengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/stickengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ribbonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ribbonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/cartoonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/cartoonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ringengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ringengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/polygonengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/polygonengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/surfaceengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/surfaceengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/axesengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/axesengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/dipoleengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/dipoleengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/simplewireengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/simplewireengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/qtaimengine.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/qtaimengine.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/engineScripts/wireframe.py -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/drawtool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/drawtool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/bondcentrictool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/bondcentrictool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/clickmeasuretool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/clickmeasuretool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/selectrotatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/selectrotatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autoopttool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autoopttool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/manipulatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/manipulatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autorotatetool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autorotatetool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/aligntool.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/aligntool.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/propextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/propextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/cartesianextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/cartesianextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/molecularpropextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/molecularpropextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/forcefieldextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/forcefieldextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/hydrogensextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/hydrogensextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/invertchiralextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/invertchiralextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/selectextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/selectextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertfragmentextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertfragmentextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertpeptideextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertpeptideextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertdnaextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertdnaextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/h2methylextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/h2methylextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/pythonterminal.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/pythonterminal.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/extensionScripts/example.py -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/animationextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/animationextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/povrayextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/povrayextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vrmlextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vrmlextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/fileimportextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/fileimportextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/shaderextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/shaderextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/clip.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/gooch.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/light.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/marble.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/per-pixel-lighting.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/per_pixel2.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/phong-use-diffuse.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/phong.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/plasma.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray-cryos.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray.vert -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/clip.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/gooch.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/light.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/marble.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/per-pixel-lighting.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/per_pixel2.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/phong-use-diffuse.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/phong.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/plasma.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray-cryos.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray.frag -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/phong.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray-cryos.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/libavogadro/shaders/x-ray.params -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/supercellextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/supercellextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/networkfetchextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/networkfetchextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gl2psextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gl2psextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/symmetryextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/symmetryextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libmsym/cmake/libmsymConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libmsym/cmake/libmsymConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/libmsym.so -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/libmsym/msym.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/include/libmsym/msym_error.h -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libmsym/cmake/libmsymTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libmsym/cmake/libmsymTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/crystallographyextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/crystallographyextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vibrationextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vibrationextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/spectraextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/spectraextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/surfaceextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/surfaceextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orbitalextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orbitalextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/qube -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/qube" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro_OpenQube.so.0.1.0 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro_OpenQube.so.0 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro_OpenQube.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro_OpenQube.so.0.1.0" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/swcntbuilderextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/swcntbuilderextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/qtaimextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/qtaimextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/inputfileextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/inputfileextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gamessextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gamessextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orcaextension.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orcaextension.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/residuecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/residuecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/atomindexcolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/atomindexcolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/chargecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/chargecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/distancecolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/distancecolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/customcolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/customcolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/smartscolor.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/smartscolor.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/python2.7/site-packages/Avogadro.so -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/python2.7/site-packages/Avogadro.so" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/avogadro -- Set runtime path of "/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/avogadro" to "" -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_af.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ar.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_bg.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ca.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ca@valencia.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_cs.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_da.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_de.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_el.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_en_AU.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_en_CA.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_en_GB.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_es.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_et.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_eu.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_fi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_fr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_fr_CA.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_gl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_he.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_hi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_hr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_hu.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_id.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_it.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ja.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_kn.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ko.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ms.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_nb.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_nl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_oc.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_pl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_pt.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_pt_BR.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ru.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_sk.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_sl.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_sq.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_sr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_sv.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ta.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_te.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_th.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_tr.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_ug.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_uk.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_vi.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_zh_CN.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/avogadro/i18n/avogadro_zh_TW.qm -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/applications/avogadro.desktop -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/pixmaps/avogadro-icon.png -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/man/man1/avogadro.1 -- Installing: /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/man/man1/avopkg.1 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' + install -pm 644 -D /builddir/build/SOURCES/avogadro.appdata.xml /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/appdata/avogadro.appdata.xml + appstream-util validate-relax --nonet /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/appdata/avogadro.appdata.xml /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/appdata/avogadro.appdata.xml: GLib-GIO-Message: Using the 'memory' GSettings backend. Your settings will not be saved or shared with other applications. OK + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 libavogadro --with-qt --without-mo + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 avogadro --with-qt --without-mo + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/avogadro-1.2.0 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro.so.1.2.0 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/aligntool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/manipulatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autoopttool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/clickmeasuretool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/selectrotatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/bondcentrictool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/autorotatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/tools/drawtool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/wireengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/axesengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/dipoleengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/stickengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/cartoonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ringengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/simplewireengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/ribbonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/forceengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/surfaceengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/polygonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/labelengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/qtaimengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/sphereengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/engines/hbondengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertfragmentextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/hydrogensextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/swcntbuilderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/pythonterminal.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/supercellextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/qtaimextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/spectraextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/animationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/inputfileextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/surfaceextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orbitalextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/orcaextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/h2methylextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/networkfetchextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/libmsym.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/forcefieldextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/shaderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/symmetryextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/propextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/invertchiralextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/cartesianextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/povrayextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gamessextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/selectextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/molecularpropextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/crystallographyextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/fileimportextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vrmlextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertpeptideextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/insertdnaextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/vibrationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/extensions/gl2psextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/distancecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/smartscolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/residuecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/customcolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/chargecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/avogadro/colors/atomindexcolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/python2.7/site-packages/Avogadro.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/libavogadro_OpenQube.so.0.1.0 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/qube extracting debug info from /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/bin/avogadro /usr/lib/rpm/sepdebugcrcfix: Updated 66 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.1.0.debug to /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.debug symlinked /usr/lib/debug/usr/lib64/libavogadro.so.1.2.0.debug to /usr/lib/debug/usr/lib64/libavogadro.so.debug symlinked /usr/lib/debug/usr/lib64/libavogadro.so.1.2.0.debug to /usr/lib/debug/usr/lib64/libavogadro.so.1.debug symlinked /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.1.0.debug to /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.debug 17412 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.65PMA8 + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + desktop-file-edit --remove-key=Version /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/applications/avogadro.desktop + xvfb-run -a dbus-launch --exit-with-session make test ARGS=--output-on-failure -C aarch64-redhat-linux-gnu make: Entering directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure Test project /builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu Start 1: drawcommandTest 1/5 Test #1: drawcommandTest .................. Passed 0.69 sec Start 2: moleculeTest 2/5 Test #2: moleculeTest .....................***Failed 0.06 sec ********* Start testing of MoleculeTest ********* Config: Using QTest library 4.8.7, Qt 4.8.7 PASS : MoleculeTest::initTestCase() PASS : MoleculeTest::addAtom() PASS : MoleculeTest::setAtomPos() PASS : MoleculeTest::atomPos() PASS : MoleculeTest::atom() PASS : MoleculeTest::atomById() PASS : MoleculeTest::atoms() PASS : MoleculeTest::removeAtom() PASS : MoleculeTest::addBond() PASS : MoleculeTest::removeBond() PASS : MoleculeTest::center() PASS : MoleculeTest::normalVector() FAIL! : MoleculeTest::radius() Compared doubles are not the same (fuzzy compare) Actual (m_molecule->radius()): 1.5 Expected (1.24373429638327494): 1.24373 Loc: [/builddir/build/BUILD/avogadro-1.2.0/libavogadro/tests/moleculetest.cpp(294)] PASS : MoleculeTest::farthestAtom() PASS : MoleculeTest::translate() PASS : MoleculeTest::conformers() PASS : MoleculeTest::cleanupTestCase() Totals: 16 passed, 1 failed, 0 skipped ********* Finished testing of MoleculeTest ********* Start 3: moleculefileTest 3/5 Test #3: moleculefileTest ................. Passed 0.19 sec Start 4: neighborlistTest 4/5 Test #4: neighborlistTest ................. Passed 0.31 sec Start 5: moleculeBench 5/5 Test #5: moleculeBench .................... Passed 206.28 sec 80% tests passed, 1 tests failed out of 5 Label Time Summary: avogadro = 207.53 sec (5 tests) Total Test time (real) = 207.54 sec The following tests FAILED: 2 - moleculeTest (Failed) Errors while running CTest make: *** [Makefile:142: test] Error 8 make: Leaving directory '/builddir/build/BUILD/avogadro-1.2.0/aarch64-redhat-linux-gnu' + : + exit 0 Processing files: avogadro-1.2.0-6.fc26.aarch64 Provides: appdata() appdata(avogadro.appdata.xml) application() application(avogadro.desktop) avogadro = 1.2.0-6.fc26 avogadro(aarch-64) = 1.2.0-6.fc26 mimehandler(chemical/x-cif) mimehandler(chemical/x-cml) mimehandler(chemical/x-daylight-smiles) mimehandler(chemical/x-gamess-input) mimehandler(chemical/x-gamess-output) mimehandler(chemical/x-gaussian-checkpoint) mimehandler(chemical/x-gaussian-cube) mimehandler(chemical/x-gaussian-log) mimehandler(chemical/x-mopac-out) mimehandler(chemical/x-pdb) mimehandler(chemical/x-qchem-output) mimehandler(chemical/x-xyz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtOpenGL.so.4()(64bit) libX11.so.6()(64bit) libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenbabel.so.5()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: avogadro-libs-1.2.0-6.fc26.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.KV12DO + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/doc/avogadro-libs + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/doc/avogadro-libs + cp -pr AUTHORS /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/doc/avogadro-libs + cp -pr README /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/doc/avogadro-libs + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.YZJkTs + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/licenses/avogadro-libs + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/licenses/avogadro-libs + cp -pr COPYING /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64/usr/share/licenses/avogadro-libs + exit 0 Provides: avogadro-libs = 1.2.0-6.fc26 avogadro-libs(aarch-64) = 1.2.0-6.fc26 libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libmsym.so()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLEW.so.2.0()(64bit) libGLU.so.1()(64bit) libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtNetwork.so.4()(64bit) libQtOpenGL.so.4()(64bit) libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libboost_python.so.1.63.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libmsym.so()(64bit) libopenbabel.so.5()(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: avogadro-devel-1.2.0-6.fc26.aarch64 Provides: avogadro-devel = 1.2.0-6.fc26 avogadro-devel(aarch-64) = 1.2.0-6.fc26 pkgconfig(avogadro) = 1.2.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) pkgconfig(eigen2) Processing files: avogadro-i18n-1.2.0-6.fc26.noarch Provides: avogadro-i18n = 1.2.0-6.fc26 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro-debuginfo-1.2.0-6.fc26.aarch64 Provides: avogadro-debuginfo = 1.2.0-6.fc26 avogadro-debuginfo(aarch-64) = 1.2.0-6.fc26 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 Wrote: /builddir/build/RPMS/avogadro-1.2.0-6.fc26.aarch64.rpm Wrote: /builddir/build/RPMS/avogadro-libs-1.2.0-6.fc26.aarch64.rpm Wrote: /builddir/build/RPMS/avogadro-devel-1.2.0-6.fc26.aarch64.rpm Wrote: /builddir/build/RPMS/avogadro-i18n-1.2.0-6.fc26.noarch.rpm Wrote: /builddir/build/RPMS/avogadro-debuginfo-1.2.0-6.fc26.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ghNMPX + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.2.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro-1.2.0-6.fc26.aarch64 + exit 0 Child return code was: 0