APBS
¶
Contents
Installing APBS
Binary installation
Source installation
What’s in the box?
Invoking APBS
APBS input files
APBS input files
READ input file section
ELEC input file section
APOLAR input file section
PRINT input file section
Solvation model background
Solvation Models
Further Reading
Caveats and sources of error
Model error
Parameter set errors
Structure-based errors
Discretization error
Solver and round-off error
APBS utilities
amber2charmm.sh
del2dx
dx2mol
dx2uhbd
qcd2pqr.awk
uhbd_asc2bin
WHATIF2AMBER.sed
benchmark
analysis
born
coulomb
dxmath
inputgen.py
mergedx and mergedx2
mgmesh
multivalue
psize.py
similarity
smooth
APBS programmer’s guide
APBS license
APBS-PDB2PQR
Navigation
Contents:
APBS-PDB2PQR overview
How to get the software
Getting started
Getting help
PDB2PQR
APBS
Installing APBS
Invoking APBS
APBS input files
Solvation model background
Caveats and sources of error
APBS utilities
APBS programmer’s guide
APBS license
Other software
File formats
APBS-PDB2PQR examples and tutorials
Support for APBS-PDB2PQR
Citing your use of our software
Suggested reading for APBS-PDB2PQR
Documentation TODO list
Related Topics
Documentation overview
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