Mock Version: 2.1 Mock Version: 2.1 Mock Version: 2.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f32-build-20698978-1511225/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1589328000 Wrote: /builddir/build/SRPMS/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f32-build-20698978-1511225/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1589328000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.C5J8JB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (apbs-cmake.patch):' Patch #0 (apbs-cmake.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .apbs-cmake --fuzz=0 patching file apbs/CMakeLists.txt patching file apbs/src/CMakeLists.txt patching file apbs/tools/manip/CMakeLists.txt patching file apbs/tools/mesh/CMakeLists.txt + cp -p apbs/contrib/iapbs/COPYING apbs/contrib/iapbs/iapbs-COPYING + cp -p /builddir/build/SOURCES/apbs-LGPL_V2 apbs/contrib/iapbs/iapbs-LGPLv2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.SiPdeC + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb ~/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs ~/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + pushd apbs + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_DOC:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DENABLE_FETK:BOOL=OFF -DENABLE_PYTHON:BOOL=ON . CMake Deprecation Warning at CMakeLists.txt:12 (cmake_policy): The OLD behavior for policy CMP0054 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Inline functions enabled -- Checking for OpenMP -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP support enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_routines -- External Headers: -- -- APBS Libraries: m;stdc++;maloc;-fopenmp -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Found SWIG: /usr/bin/swig (found version "4.0.1") -- Found Python3: /usr/bin/python3.8 (found version "3.8.2") found components: Interpreter Development -- ******* Python3 FOUND -- ***** Python3 include path is: /usr/include/python3.8 -- ***** Python3 library path is: /usr/lib/libpython3.8.so -- ***** Python3 library dir is: /usr/lib -- Building of iAPBS interface enabled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs + /usr/bin/make -O -j6 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python 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Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbslib_swig_compilation make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Scanning dependencies of target iapbs make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs_routines.dir/depend.internal". 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Scanning dependencies of target apbs_routines make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Scanning dependencies of target apbs_mg make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Scanning dependencies of target apbs_generic make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Scanning dependencies of target apbs_pmgc make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 7%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(ac, *nx * *ny * *nz, 14); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(gzcf, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(gycf, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:165:5: note: in expansion of macro 'MAT3' 165 | MAT3(gxcf, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:164:5: note: in expansion of macro 'MAT3' 164 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(a3cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(a2cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' 159 | MAT3(a1cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( ccf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( fcf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( fc, *nx, *ny, *nz); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 8%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:65:5: note: in expansion of macro 'MAT2' 65 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:131:5: note: in expansion of macro 'MAT3' 131 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:130:5: note: in expansion of macro 'MAT3' 130 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT2' 128 | MAT2(acB, *lda, *ny-1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT2' 195 | MAT2(acB, *lda, *ny-1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 1%] Swig compile apbslib.i for python cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E make_directory /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E touch /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/4.0.1 /usr/bin/swig -python -outdir /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python -interface _apbslib -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -I/usr/include/python3.8 -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python -o /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/apbslib.i make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 9%] Built target apbslib_swig_compilation make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 5%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/iapbs.dir/apbs_driver.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:278:5: warning: multi-line comment [-Wcomment] 278 | // Vnm_print(1,"\nError you must provide a parameter file if you\n" \ | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:110:21: warning: unused variable 'isolve' [-Wunused-variable] 110 | int rank, size, isolve, debug, natom; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:98:11: warning: unused variable 'gm' [-Wunused-variable] 98 | void *gm[NOSH_MAXMOL]; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:97:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] 97 | void *fetk[NOSH_MAXCALC]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:85:14: warning: unused variable 'feparm' [-Wunused-variable] 85 | FEMparm *feparm = VNULL; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c: In function 'setupString': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:938:64: warning: implicit declaration of function 'getpid' [-Wimplicit-function-declaration] 938 | sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c: In function 'getElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:1055:22: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 1055 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src/apbs_driver.c:549:42: warning: 'outputformat' may be used uninitialized in this function [-Wmaybe-uninitialized] 549 | if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 11%] Linking C static library ../../../lib/libiapbs.a cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src && /usr/bin/cmake -P CMakeFiles/iapbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/contrib/iapbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/iapbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libiapbs.a CMakeFiles/iapbs.dir/apbs_driver.c.o /usr/bin/ranlib ../../../lib/libiapbs.a make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 11%] Built target iapbs make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:57: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c: In function 'Vgrid_readDX': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:751:31: warning: format '%lu' expects argument of type 'long unsigned int *', but argument 3 has type 'size_t *' {aka 'unsigned int *'} [-Wformat=] 751 | VJMPERR1(1 == sscanf(tok, "%lu", &itmp)); | ^~~~~ ~~~~~ | | | size_t * {aka unsigned int *} /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:751:34: note: format string is defined here 751 | VJMPERR1(1 == sscanf(tok, "%lu", &itmp)); | ~~^ | | | long unsigned int * | %u /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:816:6: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable] 816 | int isBinary = 0; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:813:18: warning: unused variable 'itmp' [-Wunused-variable] 813 | size_t i, j, k, itmp, u; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/femparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/mgparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 14%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] 198 | double tgrad[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] 197 | int i, j, rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] 197 | int i, j, rc; | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] 197 | int i, j, rc; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_parseMSMS': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:183:6: warning: unused variable 'td' [-Wunused-variable] 183 | int td; | ^~ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:57: In function 'strncpy', inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:174:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:211:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.c:226:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:305:17: warning: unused variable 'name' [-Wunused-variable] 305 | const char* name = "randorient"; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parse3Dmap': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:373:10: warning: unused variable 'tok' [-Wunused-variable] 373 | char tok[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:372:17: warning: unused variable 'name' [-Wunused-variable] 372 | const char* name = "3dmap"; | ^~~~ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:57: In function 'strncpy', inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:282:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:297:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:344:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:452:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:400:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:408:7: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:656:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:500:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:563:9: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.c:573:11: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 17%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] 269 | u = u + val; | ~~^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 4%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:2683:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable] 2683 | APOLparm *apolparm = VNULL; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:57: In function 'strncpy', inlined from 'NOsh_parsePBAM' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:3139:3: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parsePBSAM' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:3268:3: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1348:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:582:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1222:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:577:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:953:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1007:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:918:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1005:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:872:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1003:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:827:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:1001:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:772:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:776:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:780:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:723:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:701:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:659:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:640:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:621:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c: In function 'BEMparm_check': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c: In function 'BEMparm_copy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable] 176 | int i; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 22%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmgp.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] 204 | int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbeparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /usr/include/string.h:495, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbeparm.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbeparm.c:57: In function 'strncpy', inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbeparm.c:1163:9: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbeparm.c:1204:5: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/apolparm.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 2%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1584 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1803 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3485 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3484 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4496 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4495 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] 4489 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] 4753 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4737 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1826:34: warning: '-PE' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1826 | sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank); | ^~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1038 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4547:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4548:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4549:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 28%] Built target apbs_routines make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/cgd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/cgd.c:99:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] 99 | beta = rhok2 / rhok1; | ~~~~~~^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 28%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c: In function 'Valist_readPQR': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable] 618 | char chs[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] 834 | Vatom_setRadius(nextAtom, radius); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] 833 | Vatom_setCharge(nextAtom, charge); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:101:5: note: in expansion of macro 'MAT2' 101 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' 151 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' 150 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' 149 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' 147 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' 146 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' 145 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' 144 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:143:5: note: in expansion of macro 'MAT3' 143 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' 141 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' 140 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' 139 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' 138 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' 135 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' 134 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:212:5: note: in expansion of macro 'MAT2' 212 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:211:5: note: in expansion of macro 'MAT2' 211 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:284:5: note: in expansion of macro 'MAT3' 284 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' 282 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' 281 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' 280 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' 279 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' 278 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' 277 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' 276 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' 275 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' 274 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' 273 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' 272 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' 271 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' 270 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' 269 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' 268 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' 267 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' 266 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' 265 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' 264 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' 263 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' 261 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' 260 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' 259 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' 258 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' 257 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:255:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:255:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:255:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:253:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:253:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:252:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:252:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:251:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:251:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:250:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:250:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:248:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:248:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:246:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:246:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:728:5: note: in expansion of macro 'MAT2' 728 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:727:5: note: in expansion of macro 'MAT2' 727 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:818:7: note: in expansion of macro 'MAT3' 818 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:817:7: note: in expansion of macro 'MAT3' 817 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:816:7: note: in expansion of macro 'MAT3' 816 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:815:7: note: in expansion of macro 'MAT3' 815 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:814:7: note: in expansion of macro 'MAT3' 814 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' 813 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' 812 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' 811 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' 810 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' 809 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' 808 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' 807 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' 806 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' 805 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' 804 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' 803 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' 802 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' 801 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' 800 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' 799 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' 798 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' 797 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' 796 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' 795 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' 794 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' 793 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' 792 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' 791 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' 790 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' 789 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' 788 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' 787 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' 786 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' 785 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' 784 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' 783 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' 782 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' 781 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' 780 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' 779 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' 778 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:776:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:776:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:776:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:774:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:774:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:773:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:773:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:772:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:772:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:771:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:771:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:769:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:769:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:767:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/buildPd.c:767:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vatom.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:115:5: note: in expansion of macro 'MAT3' 115 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:114:5: note: in expansion of macro 'MAT3' 114 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:113:5: note: in expansion of macro 'MAT3' 113 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:187:5: note: in expansion of macro 'MAT3' 187 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:182:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] 182 | int istep; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:180:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:180:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:180:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:179:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:179:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/gsd.c:179:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] 841 | Vmem *mem; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 1104 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1338 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1335 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1395 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1392 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1391 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1454 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1451 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1450 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1584 | int npts[3]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1807 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1764 | npts[3], | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 34%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vpbe.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 37%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vcap.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] 85 | int ierror = 0; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro 'MAT2' 267 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:234:12: warning: unused variable 'tsolve' [-Wunused-variable] 234 | double tsolve = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:233:12: warning: unused variable 'tsetupc' [-Wunused-variable] 233 | double tsetupc = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:232:12: warning: unused variable 'tsetupf' [-Wunused-variable] 232 | double tsetupf = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:231:12: warning: unused variable 'oh' [-Wunused-variable] 231 | double oh = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:230:12: warning: unused variable 'bf' [-Wunused-variable] 230 | double bf = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'epsmac' [-Wunused-variable] 226 | double epsmac = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:655:26: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:656:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] 653 | *iretot = num_narr * *narr | ~~~~~~~~~~~~~~~~ 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | + n_band | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgdrvd.c:654:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c:99:5: note: in expansion of macro 'MAT2' 99 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c:303:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 303 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgcsd.c:562:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | } while (*iters<*itmax && (rsnrm/rsden) > *errtol); | ~~~~~~^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 38%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vclist.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 42%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vstring.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:60:5: note: in expansion of macro 'MAT3' 60 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:59:5: note: in expansion of macro 'MAT3' 59 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:78:5: note: in expansion of macro 'MAT3' 78 | MAT3(y, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:77:5: note: in expansion of macro 'MAT3' 77 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:99:5: note: in expansion of macro 'MAT3' 99 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:98:5: note: in expansion of macro 'MAT3' 98 | MAT3(x, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:117:5: note: in expansion of macro 'MAT3' 117 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:198:9: warning: unused variable 'nproc' [-Wunused-variable] 198 | int nproc = 1; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:218:5: note: in expansion of macro 'MAT3' 218 | MAT3(gzc, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:217:5: note: in expansion of macro 'MAT3' 217 | MAT3(gyc, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:216:5: note: in expansion of macro 'MAT3' 216 | MAT3(gxc, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:215:5: note: in expansion of macro 'MAT3' 215 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:295:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] 295 | double xdum; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:293:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:293:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:322:5: note: in expansion of macro 'MAT3' 322 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:337:5: note: in expansion of macro 'MAT2' 337 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:370:5: note: in expansion of macro 'MAT3' 370 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:369:5: note: in expansion of macro 'MAT3' 369 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:368:5: note: in expansion of macro 'MAT3' 368 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:367:5: note: in expansion of macro 'MAT3' 367 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:415:5: note: in expansion of macro 'MAT3' 415 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:414:5: note: in expansion of macro 'MAT3' 414 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:413:5: note: in expansion of macro 'MAT3' 413 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:412:5: note: in expansion of macro 'MAT3' 412 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:411:5: note: in expansion of macro 'MAT3' 411 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' 410 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' 409 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' 408 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' 407 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' 406 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' 405 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' 404 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' 403 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' 402 | MAT3( oC, *nx, *ny, *nz); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:83:5: note: in expansion of macro 'MAT2' 83 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:266:5: note: in expansion of macro 'MAT2' 266 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:628:5: note: in expansion of macro 'MAT3' 628 | MAT3( fcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:627:5: note: in expansion of macro 'MAT3' 627 | MAT3( ccf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:626:5: note: in expansion of macro 'MAT3' 626 | MAT3( tcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:625:5: note: in expansion of macro 'MAT3' 625 | MAT3(a3cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:624:5: note: in expansion of macro 'MAT3' 624 | MAT3(a2cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' 623 | MAT3(a1cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' 622 | MAT3(gzcf, *nxf, *nyf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' 621 | MAT3(gycf, *nxf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' 620 | MAT3(gxcf, *nyf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' 619 | MAT3( tc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' 618 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' 617 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' 616 | MAT3( a3c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' 615 | MAT3( a2c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' 614 | MAT3( a1c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' 613 | MAT3( gzc, *nx, *ny, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' 612 | MAT3( gyc, *nx, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' 611 | MAT3( gxc, *ny, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mgsubd.c:914:5: note: in expansion of macro 'MAT2' 914 | MAT2(iz, 50, *nlev); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(abd, *lda, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro 'MAT2' 199 | MAT2(abd, *lda, 1); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 43%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vparam.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] 389 | tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); | ~^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/vparam.c:412:11: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] 412 | for (i=0; iwritematstem,nosh->proc_rank); | ^~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1038 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4547:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4548:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.c:4549:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 98%] Linking C executable ../bin/apbs cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs-bin.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/apbs-bin.dir/main.c.o CMakeFiles/apbs-bin.dir/routines.c.o -o ../bin/apbs -lm -lstdc++ -lmaloc -fopenmp ../lib/libapbs.so.1 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 98%] Built target apbs-bin make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 55%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/include -I/usr/include/python3.8 -I/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getPotentials': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3230:12: warning: unused variable 'rc' [-Wunused-variable] 3230 | int i, rc, nx, ny, nz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getForces': /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:31: warning: unused variable 'npholder' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:26: warning: unused variable 'np' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3284:15: warning: unused variable 'npvalues' [-Wunused-variable] 3284 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:199:20: warningmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' : 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2695: /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [100%] Linking C shared library ../../lib/_apbslib.so cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_apbslib.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_apbslib.so -o ../../lib/_apbslib.so 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../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o ../../src/CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ -lmaloc -fopenmp /usr/lib/libpython3.8.so cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python/apbslib.py /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/../pdb2pqr/pdb2pka cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/lib/_apbslib.so /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/../pdb2pqr/pdb2pka make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [100%] Built target _apbslib make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/CMakeFiles 0 + popd ~/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + make html -C doc make: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/doc' Running Sphinx v2.2.2 loading pickled environment... failed failed: build environment version not current building [mo]: targets for 0 po files that are out of date building [html]: targets for 202 source 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[ 53%] apbs/utilities/mgmesh writing output... [ 54%] apbs/utilities/multivalue writing output... [ 54%] apbs/utilities/psize writing output... [ 55%] apbs/utilities/qcd2pqr writing output... [ 55%] apbs/utilities/similarity writing output... [ 56%] apbs/utilities/smooth writing output... [ 56%] apbs/utilities/uhbd_asc2bin writing output... [ 57%] apbs/utilities/whatif2amber writing output... [ 57%] citing writing output... [ 58%] downloads writing output... [ 58%] examples/adding-hydrogens writing output... [ 59%] examples/binding-energies writing output... [ 59%] examples/index writing output... [ 60%] examples/parallel-apbs writing output... [ 60%] examples/parameterizing-ligands writing output... [ 61%] examples/salt-linkage writing output... [ 61%] examples/solvation-energies writing output... [ 62%] examples/unitymol writing output... [ 62%] examples/using-pymol writing output... [ 63%] formats/apbs-xml-parm writing output... [ 63%] formats/flat-parm writing output... [ 64%] formats/harwell writing output... [ 64%] formats/index writing output... [ 65%] formats/mcsf writing output... [ 65%] formats/mol2 writing output... [ 66%] formats/opendx writing output... [ 66%] formats/pdb writing output... [ 67%] formats/pdb2pqr-xml-names writing output... [ 67%] formats/pqr writing output... [ 68%] formats/uhbd writing output... [ 68%] formats/xml-struct writing output... [ 69%] getting-help writing output... [ 69%] getting-started writing output... [ 70%] index writing output... [ 70%] other-software writing output... [ 71%] overview writing output... [ 71%] pdb2pqr/extending writing output... [ 72%] pdb2pqr/index writing output... [ 72%] pdb2pqr/installing writing output... [ 73%] pdb2pqr/invoking writing output... [ 73%] pdb2pqr/license writing output... [ 74%] reading writing output... [ 74%] releases/200108-APBS-0.1.0 writing output... [ 75%] releases/200108-APBS-0.1.1 writing output... [ 75%] releases/200109-APBS-0.1.2 writing output... [ 76%] releases/200109-APBS-0.1.3 writing output... [ 76%] releases/200109-APBS-0.1.4 writing output... [ 77%] releases/200110-APBS-0.1.5 writing output... [ 77%] releases/200111-APBS-0.1.6 writing output... [ 78%] releases/200201-APBS-0.1.8 writing output... [ 78%] releases/200203-APBS-0.2.0 writing output... [ 79%] releases/200204-APBS-0.2.1 writing output... [ 79%] releases/200208-APBS-0.2.2 writing output... [ 80%] releases/200210-APBS-0.2.3 writing output... [ 80%] releases/200210-APBS-0.2.4 writing output... [ 81%] releases/200211-APBS-0.2.5 writing output... [ 81%] releases/200301-APBS-0.2.6 writing output... [ 82%] releases/200402-APBS-0.3.0 writing output... [ 82%] releases/200404-APBS-0.3.1 writing output... [ 83%] releases/200411-APBS-0.3.2 writing output... [ 83%] releases/200508-PDB2PQR-1.0.0 writing output... [ 84%] releases/200510-PDB2PQR-1.0.1 writing output... [ 84%] releases/200512-APBS-0.4.0 writing output... [ 85%] releases/200512-PDB2PQR-1.0.2 writing output... [ 85%] releases/200604-PDB2PQR-1.1.0 writing output... [ 86%] releases/200605-PDB2PQR-1.1.1 writing output... [ 86%] releases/200606-PDB2PQR-1.1.2 writing output... [ 87%] releases/200701-APBS-0.5.0 writing output... [ 87%] releases/200701-PDB2PQR-1.2.0 writing output... [ 88%] releases/200704-PDB2PQR-1.2.1 writing output... [ 88%] releases/200707-APBS-0.5.1 writing output... [ 89%] releases/200801-PDB2PQR-1.3.0 writing output... [ 89%] releases/200804-APBS-1.0.0 writing output... [ 90%] releases/200903-APBS-1.1.0 writing output... [ 90%] releases/200903-PDB2PQR-1.4.0 writing output... [ 91%] releases/200910-APBS-1.2.0 writing output... [ 91%] releases/200910-PDB2PQR-1.5 writing output... [ 92%] releases/200912-APBS-1.2.1 writing output... [ 92%] releases/201004-PDB2PQR-1.6 writing output... [ 93%] releases/201010-APBS-1.3.0 writing output... [ 93%] releases/201010-PDB2PQR-1.7 writing output... [ 94%] releases/201108-PDB2PQR-1.7.1 writing output... [ 94%] releases/201109-PDB2PQR-1.7.1a writing output... [ 95%] releases/201201-PDB2PQR-1.8 writing output... [ 95%] releases/201207-APBS-1.4.0 writing output... [ 96%] releases/201403-PDB2PQR-1.9 writing output... [ 96%] releases/201408-APBS-1.4.1 writing output... [ 97%] releases/201412-PDB2PQR-2.0.0 writing output... [ 97%] releases/201512-PDB2PQR-2.1.0 writing output... [ 98%] releases/201601-APBS-1.4.2.0 writing output... [ 98%] releases/201601-APBS-1.4.2.1 writing output... [ 99%] releases/201603-PDB2PQR-2.1.1 writing output... [ 99%] support writing output... [100%] todo generating indices... genindex py-modindexdone writing additional pages... searchdone copying images... [ 10%] media/pb-schematic.png copying images... [ 20%] media/apbs_bind_eng.png copying images... [ 30%] media/actin_dimer-iso_trans.jpg copying images... [ 40%] media/rna-qdens-pymol.jpg copying images... [ 50%] media/rna-qdens-vmd.jpg copying images... [ 60%] media/apbs_sol_eng.png copying images... [ 70%] media/1fas_VR.png copying images... [ 80%] media/fas2-iso-pymol.png copying images... [ 90%] media/fas2-surf-pymol.png copying images... [100%] media/APBS-and-PDB2PQR-user-flow.png copying downloadable files... [100%] media/apbs-programmers-guide.zip copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in _build/html. make: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/doc' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZPVPmD + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 ++ dirname /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 'INSTALL=/usr/bin/install -p' -C apbs make: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/generic/CMakeFiles/apbs_generic.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 21%] Built target apbs_generic /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 42%] Built target apbs_pmgc /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/mg/CMakeFiles/apbs_mg.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 48%] Built target apbs_mg /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 49%] Built target apbs /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs-bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 52%] Built target apbs-bin /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'src/CMakeFiles/apbs_routines.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 54%] Built target apbs_routines /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 56%] Built target uhbd_asc2bin /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/del2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 58%] Built target del2dx /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/smooth.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 61%] Built target smooth /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dxmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 63%] Built target dxmath /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mgmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 65%] Built target mgmesh /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 68%] Built target mergedx2 /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/multivalue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 70%] Built target multivalue /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/value.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 72%] Built target value /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/similarity.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 75%] Built target similarity /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 77%] Built target analysis /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/tensor2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 80%] Built target tensor2dx /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/benchmark.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 82%] Built target benchmark /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2mol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 84%] Built target dx2mol /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 87%] Built target mergedx /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2uhbd.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' [ 89%] Built target dx2uhbd /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' cd /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs 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/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[2]: Nothing to be done for 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Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RELWITHDEBINFO" -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libapbs.so.1 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libapbs.so -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/apbscfg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/apbs.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/routines.h -- Installing: 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/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/buildGd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/buildPd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/cgd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/gsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/matvecd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mgcsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mgdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mgsubd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mikpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mlinpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mypdec.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/newtond.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/newdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/powerd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/smoothd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/pmgc/mgfasd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/mg/vgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/mg/vmgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/mg/vopot.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/mg/vpmg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/apbs/mg/vpmgp.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mgmesh -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/smooth -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dxmath -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx2 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/value -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/multivalue -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/benchmark -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/similarity -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/analysis -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2mol -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2uhbd -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/del2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/tensor2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/uhbd_asc2bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/coulomb -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/born -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libiapbs.a -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/include/iapbs/apbs_driver.h make: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb/apbs' + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/coulomb + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-coulomb + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/coulomb + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/born + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/born /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-born + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/born + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mgmesh + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mgmesh + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mgmesh + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dxmath + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dxmath + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dxmath + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx2 + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx2 + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx2 + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/mergedx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/value + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/value /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-value + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/value + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/uhbd_asc2bin + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-uhbd_asc2bin + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/uhbd_asc2bin + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/smooth + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/smooth /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-smooth + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/smooth + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2mol + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2mol + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2mol + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2uhbd + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2uhbd + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/dx2uhbd + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/similarity + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/similarity /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-similarity + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/similarity + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/multivalue + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-multivalue + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/multivalue + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/benchmark + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-benchmark + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/benchmark + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/analysis + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/analysis /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-analysis + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/analysis + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/del2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-del2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/del2dx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/tensor2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-tensor2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/tensor2dx + mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs + install -pm 755 apbs/tools/manip/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/ + pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/psize.py: updating + ln -s /usr/lib/python3.8/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-psize.py + install -pm 755 apbs/lib/_apbslib.so /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/ ++ find /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 -type f '(' -name '*.a' ')' + for i in `find /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 -type f \( -name "*.a" \)` + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libiapbs.a + /usr/lib/rpm/find-debuginfo.sh -j6 --strict-build-id -m -i --build-id-seed 3.0.0-0.1.20200512.gitdfb858d.fc32 --unique-debug-suffix -3.0.0-0.1.20200512.gitdfb858d.fc32.i386 --unique-debug-src-base apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-analysis explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-del2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-benchmark explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-del2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-benchmark extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-analysis extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-coulomb explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2mol extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2mol explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2uhbd explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dxmath extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dx2uhbd explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-dxmath explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx2 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mergedx2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mgmesh extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-mgmesh explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-multivalue explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-similarity extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-multivalue extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-similarity explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-smooth explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-smooth explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-uhbd_asc2bin extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-uhbd_asc2bin explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-value extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/bin/apbs-value explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libapbs.so.1 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/libapbs.so.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/_apbslib.so extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8/site-packages/apbs/_apbslib.so original debug info size: 3960kB, size after compression: 3632kB /usr/lib/rpm/sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match. 5150 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/python3.8 using /usr/bin/python3.8 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/lib/debug/usr/lib/python3.8 using /usr/bin/python3.8 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libm.so.6 libm.so.6(GLIBC_2.0) libmaloc.so.1 rtld(GNU_HASH) Processing files: apbs-tools-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 warning: absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib/python3.8/site-packages/apbs/psize.py Provides: apbs-tools = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-tools(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.29) libmaloc.so.1 libpthread.so.0 rtld(GNU_HASH) Processing files: apbs-libs-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tMrfDC + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-libs + cp -pr apbs/README.md /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.K3V4YB + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + cp -pr apbs/LICENSE.md /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + cp -pr apbs/COPYING /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-COPYING /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-libs = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-libs(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 libapbs.so.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libmaloc.so.1 libpython3.8.so.1.0 python(abi) = 3.8 rtld(GNU_HASH) Processing files: apbs-devel-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs-devel = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-devel(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1 Processing files: apbs-doc-3.0.0-0.1.20200512.gitdfb858d.fc32.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FXHFHD + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-doc + cp -pr doc/_build/html /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/doc/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.80wvOE + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-doc + cp -pr doc/apbs/license.rst /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386/usr/share/licenses/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-doc = 3.0.0-0.1.20200512.gitdfb858d.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debugsource-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs-debugsource = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-debugsource(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs-debuginfo = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-debuginfo(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 debuginfo(build-id) = 972ec549dac9e573263e292157cd389bce854474 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Processing files: apbs-tools-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs-tools-debuginfo = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-tools-debuginfo(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 debuginfo(build-id) = 0306846a68242dd22b33e0e07dd1099dfa8270b3 debuginfo(build-id) = 09006ce6805c2f1db6ccbedad3b4d34e36eeb7f7 debuginfo(build-id) = 35d997fffcf8e759583f025914465f2bf59c98c5 debuginfo(build-id) = 50d2d5f675c00ae4a6c07e42563617f2dcd21e5b debuginfo(build-id) = 5551f344f7b86d22fde68e580f3ccc4a584f9d99 debuginfo(build-id) = 587f98068ab40e7adf055916d028e20f3ce5e882 debuginfo(build-id) = 5c761a9df5a5acb76cb1afd1b3036becf9dab48d debuginfo(build-id) = 643a91401675b8a4c20952ae717adace00335886 debuginfo(build-id) = 88aec963668bb297118c07061f9f81be7998ccb1 debuginfo(build-id) = b10b9ab87033c62b2f743fe769e96c877d2d0056 debuginfo(build-id) = b3e8b15fcd7b9503e28ec78ae65526fee688ed07 debuginfo(build-id) = e053da1049bf9644ceb6d764aaee32a710869659 debuginfo(build-id) = f48137092bf19e362067e87c3fa2adb829164089 debuginfo(build-id) = f666207f78720d560f892ab11e9af0e94de705c7 debuginfo(build-id) = feb6b859bb3f34b7980b5bd52c5e78e5b789f8cd debuginfo(build-id) = ff6406a548564630685cf144b20643d139c0b26f debuginfo(build-id) = ffdc84568aab1d519e044fd0410a0ad1ebe5ab23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Processing files: apbs-libs-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686 Provides: apbs-libs-debuginfo = 3.0.0-0.1.20200512.gitdfb858d.fc32 apbs-libs-debuginfo(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 debuginfo(build-id) = a663a8fcc458ef5c357bffd4dd4b1e0391b1dd10 debuginfo(build-id) = d4582e5581efff1d22ddbd9929b5c3961ade1cfd Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-32) = 3.0.0-0.1.20200512.gitdfb858d.fc32 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 Wrote: /builddir/build/RPMS/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-0.1.20200512.gitdfb858d.fc32.i686.rpm Wrote: /builddir/build/RPMS/apbs-doc-3.0.0-0.1.20200512.gitdfb858d.fc32.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rWHgkE + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-dfb858d32674438fb8c21421acc86e21667eb8cb + /usr/bin/rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-0.1.20200512.gitdfb858d.fc32.i386 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0