Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f28-build-11343097-851824/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False warning: bogus date in %changelog: Thu Nov 04 2009 Tim Fenn - 1.2.0-1 Building target platforms: ppc64le Building for target ppc64le Wrote: /builddir/build/SRPMS/apbs-1.4-8.fc28.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f28-build-11343097-851824/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False warning: bogus date in %changelog: Thu Nov 04 2009 Tim Fenn - 1.2.0-1 Building target platforms: ppc64le Building for target ppc64le Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.YF33LB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs + /usr/bin/gzip -dc /builddir/build/SOURCES/APBS-1.4-source.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (apbs-cmake.patch): + echo 'Patch #0 (apbs-cmake.patch):' + /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0 patching file CMakeLists.txt patching file src/CMakeLists.txt patching file tools/manip/CMakeLists.txt patching file tools/mesh/CMakeLists.txt + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OUtILC + umask 022 + cd /builddir/build/BUILD + cd apbs + cd build + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D BUILD_DOC:BOOL=ON .. -- The C compiler identification is GNU 8.0.1 -- The CXX compiler identification is GNU 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machien epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Checking for math library -- The math library was found: /usr/lib64/libm.so -- Checking for the liberty library CMake Warning at CMakeLists.txt:194 (message): Liberty library not found CMake Warning at CMakeLists.txt:216 (message): The nsl library was not found CMake Warning at CMakeLists.txt:238 (message): The socket library was not found CMake Warning at CMakeLists.txt:260 (message): The thread library was not found -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found CMake Warning at CMakeLists.txt:370 (message): Did not find fetk -- Looking for include file maloc/maloc.h -- Looking for include file maloc/maloc.h - found -- External maloc headers found -- External maloc library was found: /usr/lib64/libmaloc.so -- Checking for zlib -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.11") -- The zlib library was found: /usr/lib64/libz.so -- Inline functions enabled -- Checking for OpenMP CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:310 (if): if given arguments: "TRUE" An argument named "TRUE" appears in a conditional statement. Policy CMP0012 is not set: if() recognizes numbers and boolean constants. Run "cmake --help-policy CMP0012" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) CMakeLists.txt:737 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:310 (if): if given arguments: "TRUE" An argument named "TRUE" appears in a conditional statement. Policy CMP0012 is not set: if() recognizes numbers and boolean constants. Run "cmake --help-policy CMP0012" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/Modules/FindOpenMP.cmake:425 (_OPENMP_GET_SPEC_DATE) CMakeLists.txt:737 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_CXX: -fopenmp -- Found OpenMP: TRUE -- OpenMP support enabled -- Checking for MPI -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) CMake Warning at CMakeLists.txt:767 (message): MPI was not found; disabling -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h -- With internal header files -- With library dependencies /usr/lib64/libm.so;/usr/lib64/libmaloc.so;/usr/lib64/libz.so;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies /usr/lib64/libm.so;/usr/lib64/libmaloc.so;/usr/lib64/libz.so;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies /usr/lib64/libm.so;/usr/lib64/libmaloc.so;/usr/lib64/libz.so;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Building documentation enabled -- Found Doxygen: /usr/bin/doxygen (found version "1.8.14") found components: doxygen missing components: dot -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE LIB_SUFFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs/build + make -j4 /usr/bin/cmake -H/builddir/build/BUILD/apbs -B/builddir/build/BUILD/apbs/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs/build/CMakeFiles /builddir/build/BUILD/apbs/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs/build' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/mg /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/mg /builddir/build/BUILD/apbs/build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/generic /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/generic /builddir/build/BUILD/apbs/build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/pmgc /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/pmgc /builddir/build/BUILD/apbs/build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/doc /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/doc /builddir/build/BUILD/apbs/build/doc/CMakeFiles/doc.dir/DependInfo.cmake --color= Scanning dependencies of target doc Scanning dependencies of target apbs_generic make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/build make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Entering directory '/builddir/build/BUILD/apbs/build' Scanning dependencies of target apbs_mg make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build [ 1%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs/src/generic/nosh.c [ 2%] Generating documentation with Doxygen cd /builddir/build/BUILD/apbs/doc/programmer && /usr/bin/doxygen /builddir/build/BUILD/apbs/doc/programmer/Doxyfile [ 3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /builddir/build/BUILD/apbs/build/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs/src/mg/vgrid.c Scanning dependencies of target apbs_pmgc make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build warning: Tag `SYMBOL_CACHE_SIZE' at line 346 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1427 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1433 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: the dot tool could not be found at ../../../../../../../../../../Program Files (x86)/Graphviz 2.28/bin warning: tag INPUT: input source `../license/LICENSE.h' does not exist make[2]: Entering directory '/builddir/build/BUILD/apbs/build' warning: source ../license/LICENSE.h is not a readable file or directory... skipping. [ 5%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/buildAd.c /builddir/build/BUILD/apbs/src/fem/vfetk.c:2519: warning: More #endif's than #if's found. /builddir/build/BUILD/apbs/src/mg/vgrid.c: In function 'Vgrid_readGZ': /builddir/build/BUILD/apbs/src/mg/vgrid.c:456:12: warning: unused variable 'itmp' [-Wunused-variable] int q, itmp, u, header, incr; ^~~~ /builddir/build/BUILD/apbs/src/mg/vgrid.c:456:9: warning: unused variable 'q' [-Wunused-variable] int q, itmp, u, header, incr; ^ /builddir/build/BUILD/apbs/src/mg/vgrid.c: In function 'Vgrid_writeGZ': /builddir/build/BUILD/apbs/src/mg/vgrid.c:825:10: warning: unused variable 'precFormat' [-Wunused-variable] char precFormat[VMAX_BUFSIZE]; ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs/src/mg/vgrid.c:1255:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double xmin, ymin, zmin, hzed, hy, hx; ^~ /builddir/build/BUILD/apbs/src/mg/vgrid.c:1255:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double xmin, ymin, zmin, hzed, hy, hx; ^~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:61:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 14); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' MAT3(gzcf, *nx, *ny, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' MAT3(gycf, *nx, *nz, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' MAT3(gxcf, *ny, *nz, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' MAT3(a3cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' MAT3(a2cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' MAT3(a1cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:153:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:152:5: note: in expansion of macro 'MAT3' MAT3( ccf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:151:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:150:5: note: in expansion of macro 'MAT3' MAT3( fcf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildAd.c:149:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ [ 6%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/buildBd.c Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/apbs/src Searching for files in directory /builddir/build/BUILD/apbs/src/config Searching for files in directory /builddir/build/BUILD/apbs/src/fem Searching for files in directory /builddir/build/BUILD/apbs/src/generic Searching for files in directory /builddir/build/BUILD/apbs/src/mg Searching for files in directory /builddir/build/BUILD/apbs/src/pmgc Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/apbs/src/apbs.h... Parsing file /builddir/build/BUILD/apbs/src/apbs.h... Preprocessing /builddir/build/BUILD/apbs/src/apbscfg.h... Parsing file /builddir/build/BUILD/apbs/src/apbscfg.h... Preprocessing /builddir/build/BUILD/apbs/src/config/double_epsilon.c... Parsing file /builddir/build/BUILD/apbs/src/config/double_epsilon.c... Preprocessing /builddir/build/BUILD/apbs/src/config/embed_test.c... Parsing file /builddir/build/BUILD/apbs/src/config/embed_test.c... Preprocessing /builddir/build/BUILD/apbs/src/config/float_epsilon.c... Parsing file /builddir/build/BUILD/apbs/src/config/float_epsilon.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vcsm.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vcsm.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vcsm.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vcsm.h... Preprocessing /builddir/build/BUILD/apbs/src/fem/vfetk.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vfetk.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vfetk.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vfetk.h... Preprocessing /builddir/build/BUILD/apbs/src/fem/vpee.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vpee.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vpee.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vpee.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/apolparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/apolparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/apolparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/apolparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/femparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/femparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/femparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/femparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/mgparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/mgparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/mgparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/mgparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/nosh.c... Parsing file /builddir/build/BUILD/apbs/src/generic/nosh.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/nosh.h... Parsing file /builddir/build/BUILD/apbs/src/generic/nosh.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/pbeparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/pbeparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/pbeparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/pbeparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vacc.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vacc.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vacc.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vacc.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/valist.c... Parsing file /builddir/build/BUILD/apbs/src/generic/valist.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/valist.h... Parsing file /builddir/build/BUILD/apbs/src/generic/valist.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vatom.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vatom.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vatom.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vatom.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vcap.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vcap.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vcap.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vcap.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vclist.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vclist.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vclist.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vclist.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vgreen.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vgreen.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vgreen.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vgreen.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vhal.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vhal.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vmatrix.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vmatrix.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vparam.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vparam.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vparam.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vparam.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vpbe.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vpbe.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vpbe.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vpbe.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vstring.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vstring.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vstring.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vstring.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vunit.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vunit.h... Preprocessing /builddir/build/BUILD/apbs/src/main.c... Parsing file /builddir/build/BUILD/apbs/src/main.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vgrid.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vgrid.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vgrid.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vgrid.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vmgrid.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vmgrid.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vmgrid.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vmgrid.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vopot.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vopot.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vopot.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vopot.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmg.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmg.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmg.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmg.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmgp.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmgp.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmgp.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmgp.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildAd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildAd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildAd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildAd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildBd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildBd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildBd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildBd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildGd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildGd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildGd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildGd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildPd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildPd.c... Preprocessing /buIn file included from /builddir/build/BUILD/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:60:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:127:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:126:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:125:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:123:5: note: in expansion of macro 'MAT2' MAT2(acB, *lda, *ny-1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:201:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:194:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:193:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:192:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildBd.c:190:5: note: in expansion of macro 'MAT2' MAT2(acB, *lda, *ny-1); ^~~~ [ 7%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/buildGd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildGd.c: In function 'VbuildG': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:59:5: note: in expansion of macro 'MAT2' MAT2( ac, *nxc * *nyc * *nzc, 27); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:58:5: note: in expansion of macro 'MAT2' MAT2(acFF, *nxf * *nyf * *nzf, 27); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:57:5: note: in expansion of macro 'MAT2' MAT2(pcFF, *nxc * *nyc * *nzc, 27); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:207:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:197:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:187:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:178:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:175:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:169:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:167:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:166:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:165:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:163:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:159:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:159:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:159:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:158:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int iim1, iip1, jjm1, jjp1, kkm1, kkp1; ^~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:523:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:513:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:503:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:493:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:487:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:485:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:481:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:479:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:478:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:477:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:468:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:468:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:468:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:467:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:464:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:464:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:463:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm1, jp1, jm2, jp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:462:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im1, ip1, im2, ip2; ^~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1371:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1361:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1351:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1341:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1335:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3' MAT3( uSW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3' MAT3( uSE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3' MAT3( uNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3' MAT3( uNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1325:5: note: in expansion of macro 'MAT3' MAT3( uS, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3' MAT3( uN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3' MAT3( uW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3' MAT3( uE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1319:5: note: in expansion of macro 'MAT3' MAT3( oNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1318:5: note: in expansion of macro 'MAT3' MAT3( oNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1317:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1316:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1315:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1272:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1272:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1272:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1271:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1268:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildGd.c:1268:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ [ 9%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /builddir/build/BUILD/apbs/build/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs/src/mg/vmgrid.c /builddir/build/BUILD/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] double tgrad[3]; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] int i, j, rc; ^~ /builddir/build/BUILD/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, rc; ^ /builddir/build/BUILD/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] int i, j, rc; ^ [ 10%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs/build/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs/src/mg/vopot.c /builddir/build/BUILD/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^ [ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs/src/generic/mgparm.c /builddir/build/BUILD/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] u = u + val; ~~^~~~~~~~~ [ 13%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /builddir/build/BUILD/apbs/build/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs/src/mg/vpmg.c /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2': /builddir/build/BUILD/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable] double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2; ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE': /builddir/build/BUILD/apbs/src/mg/vpmg.c:1508:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable] zks2; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint': /builddir/build/BUILD/apbs/src/mg/vpmg.c:1717:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable] double *pvec; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1714:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1714:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1714:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy': /builddir/build/BUILD/apbs/src/mg/vpmg.c:1799:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1799:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1799:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'focusFillBound': /builddir/build/BUILD/apbs/src/mg/vpmg.c:1958:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable] charge, ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1957:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable] *apos, ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1956:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] size, ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1955:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable] xkappa, ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcfl2': /builddir/build/BUILD/apbs/src/mg/vpmg.c:2673:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2673:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2673:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcCalcOrig': /builddir/build/BUILD/apbs/src/mg/vpmg.c:2932:17: warning: enumeration value 'VCM_PERMANENT' not handled in switch [-Wswitch] switch (thee->chargeSrc) { ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2932:17: warning: enumeration value 'VCM_INDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:2932:17: warning: enumeration value 'VCM_NLINDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:3085:17: warning: enumeration value 'VCM_PERMANENT' not handled in switch [-Wswitch] switch (thee->chargeSrc) ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3085:17: warning: enumeration value 'VCM_INDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:3085:17: warning: enumeration value 'VCM_NLINDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:2837:34: warning: unused variable 'debye' [-Wunused-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2837:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2837:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcflnew': /builddir/build/BUILD/apbs/src/mg/vpmg.c:3410:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] double dist, pre1, eps_w, eps_p, T, xkappa; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:29: warning: unused variable 'z1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:25: warning: unused variable 'z0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:21: warning: unused variable 'y1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:17: warning: unused variable 'y0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:13: warning: unused variable 'x1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3405:9: warning: unused variable 'x0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3404:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3404:11: warning: unused variable 'j' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3404:9: warning: unused variable 'i' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'multipolebc': /builddir/build/BUILD/apbs/src/mg/vpmg.c:3487:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable] double kr,kr2,kr3; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcfl_sdh': /builddir/build/BUILD/apbs/src/mg/vpmg.c:3663:9: warning: enumeration value 'VCM_PERMANENT' not handled in switch [-Wswitch] switch (thee->chargeSrc) { ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3663:9: warning: enumeration value 'VCM_INDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:3663:9: warning: enumeration value 'VCM_NLINDUCED' not handled in switch [-Wswitch] /builddir/build/BUILD/apbs/src/mg/vpmg.c:3603:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3603:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3603:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3599:22: warning: unused variable 'quadrupole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3599:13: warning: unused variable 'dipole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcfl_mdh': /builddir/build/BUILD/apbs/src/mg/vpmg.c:3865:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] double size, charge, xkappa, eps_w, eps_p, T, pre1, dist; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3864:22: warning: unused variable 'quadrupole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3864:13: warning: unused variable 'dipole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcfl_mem': /builddir/build/BUILD/apbs/src/mg/vpmg.c:3998:24: warning: unused variable 'edge_L' [-Wunused-variable] double A, B, C, D, edge_L, l; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3997:38: warning: unused variable 'z_shift' [-Wunused-variable] double dist, val, z_low, z_high, z_shift; ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3997:12: warning: unused variable 'dist' [-Wunused-variable] double dist, val, z_low, z_high, z_shift; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcfl_map': /builddir/build/BUILD/apbs/src/mg/vpmg.c:4167:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:4167:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:4167:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:4166:11: warning: unused variable 'pbe' [-Wunused-variable] Vpbe *pbe; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap': /builddir/build/BUILD/apbs/src/mg/vpmg.c:4482:46: warning: unused variable 'pot' [-Wunused-variable] double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon': /builddir/build/BUILD/apbs/src/mg/vpmg.c:4628:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable] Vsurf_Meth surfMeth; ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:4620:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable] Vacc *acc; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth': /builddir/build/BUILD/apbs/src/mg/vpmg.c:4736:30: warning: unused variable 'deps' [-Wunused-variable] double srad, epsw, epsp, deps, area; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline': /builddir/build/BUILD/apbs/src/mg/vpmg.c:5021:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCharge': /builddir/build/BUILD/apbs/src/mg/vpmg.c:5279:15: warning: unused variable 'rc' [-Wunused-variable] Vrc_Codes rc; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap': /builddir/build/BUILD/apbs/src/mg/vpmg.c:5336:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:5336:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:5336:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_force': /builddir/build/BUILD/apbs/src/mg/vpmg.c:5819:12: warning: unused variable 'npF' [-Wunused-variable] double npF[3]; /* Non-polar boundary force */ ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce': /builddir/build/BUILD/apbs/src/mg/vpmg.c:5844:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:5844:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:5844:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:5838:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable] Valist *alist; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce': /builddir/build/BUILD/apbs/src/mg/vpmg.c:6009:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable] double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6009:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable] double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6008:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6008:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6008:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6008:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'qfForceSpline2': /builddir/build/BUILD/apbs/src/mg/vpmg.c:6443:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6443:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6443:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'qfForceSpline4': /builddir/build/BUILD/apbs/src/mg/vpmg.c:6566:15: warning: unused variable 'k' [-Wunused-variable] int i, j, k, ii, jj, kk; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6566:12: warning: unused variable 'j' [-Wunused-variable] int i, j, k, ii, jj, kk; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6558:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6558:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6558:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'markFrac': /builddir/build/BUILD/apbs/src/mg/vpmg.c:6682:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable] double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'zlapSolve': /builddir/build/BUILD/apbs/src/mg/vpmg.c:6902:12: warning: unused variable 'norm' [-Wunused-variable] double norm, coef, proj, eigx, eigy, eigz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace': /builddir/build/BUILD/apbs/src/mg/vpmg.c:7034:35: warning: variable 'n' set but not used [-Wunused-but-set-variable] int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7034:18: warning: unused variable 'ijk' [-Wunused-variable] int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole': /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:58: warning: unused variable 'mqzz' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:53: warning: unused variable 'mqzy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:48: warning: unused variable 'mqzx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:43: warning: unused variable 'mqyy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:38: warning: unused variable 'mqyx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:33: warning: unused variable 'mqxx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:29: warning: unused variable 'muz' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:25: warning: unused variable 'muy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:21: warning: unused variable 'mux' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:18: warning: unused variable 'mc' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7253:12: warning: unused variable 'debye' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7252:24: warning: unused variable 'mr2' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7252:20: warning: unused variable 'mkr' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7252:16: warning: unused variable 'mjr' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7252:12: warning: unused variable 'mir' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7248:9: warning: unused variable 'i' [-Wunused-variable] int i, ii, jj, kk, nx, ny, nz, iatom; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7243:47: warning: unused variable 'qave' [-Wunused-variable] double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7242:29: warning: unused variable 'quad' [-Wunused-variable] double charge, *dipole,*quad; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7242:21: warning: unused variable 'dipole' [-Wunused-variable] double charge, *dipole,*quad; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4': /builddir/build/BUILD/apbs/src/mg/vpmg.c:9938:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:9936:42: warning: unused variable 'w2i' [-Wunused-variable] double irad, dx, dy, dz, epsw, epsp, w2i; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced': /builddir/build/BUILD/apbs/src/mg/vpmg.c:10268:9: warning: unused variable 'i' [-Wunused-variable] int i, ii, jj, kk, nx, ny, nz, iatom; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10263:47: warning: unused variable 'qave' [-Wunused-variable] double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10262:29: warning: unused variable 'quad' [-Wunused-variable] double charge, *dipole,*quad; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10262:21: warning: unused variable 'dipole' [-Wunused-variable] double charge, *dipole,*quad; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3': /builddir/build/BUILD/apbs/src/mg/vpmg.c:10431:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] double e, e2, e3, e4, e5; ^~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10429:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10427:42: warning: unused variable 'w2i' [-Wunused-variable] double irad, dx, dy, dz, epsw, epsp, w2i; ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcolcomp': /builddir/build/BUILD/apbs/src/mg/vpmg.c:10736:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10736:47: warning: unused variable 'maxlev' [-Wunused-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10736:39: warning: unused variable 'ierror' [-Wunused-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10736:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10736:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10733:29: warning: unused variable 'i' [-Wunused-variable] int nrow, ncol, nnzero, i; ^ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10733:21: warning: unused variable 'nnzero' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10733:15: warning: unused variable 'ncol' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10733:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~ In file included from /builddir/build/BUILD/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcolcomp2': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10794:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, nlev); ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcolcomp3': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10826:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c: In function 'bcolcomp4': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10864:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10863:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10862:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10861:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10860:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:10856:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] int inonz, iirow, nn, nrow, ncol, nonz, irow, n; ^~~~ In file included from /builddir/build/BUILD/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs/src/mg/vpmg.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:7219:16: warning: 'd3bspline4' defined but not used [-Wunused-function] VPUBLIC double d3bspline4(double x) { ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:6674:15: warning: 'markFrac' defined but not used [-Wunused-function] VPRIVATE void markFrac( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:3858:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function] VPRIVATE void bcfl_mdh(Vpmg *thee){ ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2833:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function] VPRIVATE void bcCalcOrig(Vpmg *thee) { ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:2552:17: warning: 'bcfl1sp' defined but not used [-Wunused-function] VPRIVATE double bcfl1sp(double size, double *apos, double charge, ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.c:1153:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee, ^~~~~~~~~~~~~~~~~~ [ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs/src/generic/femparm.c [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs/src/generic/pbeparm.c [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs/src/generic/apolparm.c [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs/src/generic/vacc.c /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs/src/generic/vacc.c:846:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] Vmem *mem; ^~~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs/src/generic/vacc.c:1116:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] double e, e2, e3, e4, e5; ^~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs/src/generic/vacc.c:1350:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] time_t ts; ^~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1347:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs/src/generic/vacc.c:1407:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1404:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] double *temp_Pos, tRad; ^~~~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1403:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] int iatom; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs/src/generic/vacc.c:1466:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1463:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] double *temp_Pos, tRad; ^~~~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1462:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] int iatom; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs/src/generic/vacc.c:1596:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] int npts[3]; ^~~~ /builddir/build/BUILD/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs/src/generic/vacc.c:1819:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] time_t ts; ^~ /builddir/build/BUILD/apbs/src/generic/vacc.c:1776:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] npts[3], ^~~~ [ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs/src/generic/valist.c /builddir/build/BUILD/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs/src/generic/valist.c:823:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] Vatom_setRadius(nextAtom, radius); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/generic/valist.c:822:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] Vatom_setCharge(nextAtom, charge); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/generic/valist.c:820:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ /builddir/build/BUILD/apbs/src/generic/valist.c:820:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ /builddir/build/BUILD/apbs/src/generic/valist.c:820:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ [ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs/src/generic/vatom.c [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs/src/generic/vpbe.c [ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs/src/generic/vcap.c [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs/src/generic/vclist.c [ 26%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs/src/generic/vstring.c [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs/src/generic/vparam.c /builddir/build/BUILD/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); ~^~~~~~~ /builddir/build/BUILD/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] int i, ires, natoms, nalloc, ralloc; ^~~~~~ [ 28%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /builddir/build/BUILD/apbs/build/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs/src/generic/vgreen.c /builddir/build/BUILD/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct': /builddir/build/BUILD/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^ /builddir/build/BUILD/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb': /builddir/build/BUILD/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable] int iatom, ipos; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable] Vatom *atom; ^~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct': /builddir/build/BUILD/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp; ^ /builddir/build/BUILD/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD': /builddir/build/BUILD/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable] int iatom, ipos; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp; ^ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable] Vatom *atom; ^~~~ At top level: /builddir/build/BUILD/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function] VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, ^~~~~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function] VPRIVATE int treecleanup(Vgreen *thee) { ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function] VPRIVATE int treesetup(Vgreen *thee) { ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 28%] Built target apbs_generic [ 30%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs/build/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs/src/mg/vpmgp.c [ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/buildPd.c /builddir/build/BUILD/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:62:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:61:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:96:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:153:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:142:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:131:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:130:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:129:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:128:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:127:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:207:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:206:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:256:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:255:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:254:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:253:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:252:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:250:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:250:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:250:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:248:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:248:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:247:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:247:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:246:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:246:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:245:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:245:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:243:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:243:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:241:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:241:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:50: /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:723:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:722:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' MAT3( uSW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' MAT3( uSE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' MAT3( uNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' MAT3( uNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' MAT3( uS, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' MAT3( uN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' MAT3( uW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' MAT3( uE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' MAT3( oNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:777:7: note: in expansion of macro 'MAT3' MAT3( oNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:776:7: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:775:7: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:774:7: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:773:7: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:771:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:771:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:771:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:769:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:769:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:768:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:768:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:767:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:767:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:766:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:766:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:764:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:764:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:762:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/buildPd.c:762:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ ilddir/build/BUILD/apbs/src/pmgc/buildPd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildPd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/cgd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/cgd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/cgd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/cgd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/gsd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/gsd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/gsd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/gsd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/matvecd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/matvecd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/matvecd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/matvecd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgcsd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgcsd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgsubd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgsubd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mypdec.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mypdec.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mypdec.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mypdec.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newdrvd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newdrvd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newtond.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newtond.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newtond.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newtond.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/powerd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/powerd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/powerd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/powerd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/smoothd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/smoothd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/smoothd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/smoothd.h... Preprocessing /builddir/build/BUILD/apbs/src/routines.c... Parsing file /builddir/build/BUILD/apbs/src/routines.c... Preprocessing /builddir/build/BUILD/apbs/src/routines.h... Parsing file /builddir/build/BUILD/apbs/src/routines.h... Preprocessing /builddir/build/BUILD/apbs/doc/programmer/mainpage.h... Parsing file /builddir/build/BUILD/apbs/doc/programmer/mainpage.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file doc/programmer/mainpage.h... Generating code for file src/apbs.h... Generating code for file src/apbscfg.h... Generating code for file src/config/double_epsilon.c... Generating code for file src/config/embed_test.c... Generating code for file src/config/float_epsilon.c... Generating code for file src/fem/vcsm.c... Generating code for file src/fem/vcsm.h... Generating code for file src/fem/vfetk.c... Generating code for file src/fem/vfetk.h... Generating code for file src/fem/vpee.c... Generating code for file src/fem/vpee.h... Generating code for file src/generic/apolparm.c... Generating code for file src/generic/apolparm.h... Generating code for file src/generic/femparm.c... Generating code for file src/generic/femparm.h... Generating code for file src/generic/mgparm.c... Generating code for file src/generic/mgparm.h... Generating code for file src/generic/nosh.c... Generating code for file src/generic/nosh.h... Generating code for file src/generic/pbeparm.c... Generating code for file src/generic/pbeparm.h... Generating code for file src/generic/vacc.c... Generating code for file src/generic/vacc.h... Generating code for file src/generic/valist.c... Generating code for file src/generic/valist.h... Generating code for file src/generic/vatom.c... Generating code for file src/generic/vatom.h... Generating code for file src/generic/vcap.c... Generating code for file src/generic/vcap.h... Generating code for file src/generic/vclist.c... Generating code for file src/generic/vclist.h... Generating code for file src/generic/vgreen.c... Generating code for file src/generic/vgreen.h... Generating code for file src/generic/vhal.h... Generating code for file src/generic/vmatrix.h... Generating code for file src/generic/vparam.c... Generating code for file src/generic/vparam.h... Generating code for file src/generic/vpbe.c... Generating code for file src/generic/vpbe.h... Generating code for file src/generic/vstring.c... Generating code for file src/generic/vstring.h... Generating code for file src/generic/vunit.h... Generating code for file src/main.c... Generating code for file src/mg/vgrid.c... Generating code for file src/mg/vgrid.h... Generating code for file src/mg/vmgrid.c... Generating code for file src/mg/vmgrid.h... Generating code for file src/mg/vopot.c... Generating code for file src/mg/vopot.h... Generating code for file src/mg/vpmg.c... Generating code for file src/mg/vpmg.h... Generating code for file src/mg/vpmgp.c... Generating code for file src/mg/vpmgp.h... Generating code for file src/pmgc/bmake[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 31%] Built target apbs_mg [ 32%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/cgd.c /builddir/build/BUILD/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs/src/pmgc/cgd.c:94:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] beta = rhok2 / rhok1; ~~~~~~^~~~~~~ [ 34%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/gsd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/gsd.c:50: /builddir/build/BUILD/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:62:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:103:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:102:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:101:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:200:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:197:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:183:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:182:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:181:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:177:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] int istep; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:175:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:175:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:175:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:174:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:174:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ /builddir/build/BUILD/apbs/src/pmgc/gsd.c:174:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ [ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/matvecd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:82:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:105:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:104:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:103:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:102:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:101:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:134:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:175:5: note: in expansion of macro 'MAT3' MAT3(uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3' MAT3(uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3' MAT3(uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3' MAT3(uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:169:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:165:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:163:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:162:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:161:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:259:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3' MAT3( y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:284:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:284:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:284:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:282:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:281:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:318:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' MAT3( w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3' MAT3( y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:352:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:351:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:350:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:349:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmresid7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:447:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:472:5: note: in expansion of macro 'MAT3' MAT3(r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:468:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:467:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:466:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:465:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmresid27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:499:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:546:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3' MAT3(uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:541:5: note: in expansion of macro 'MAT3' MAT3(uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3' MAT3(uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3' MAT3(uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:536:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:535:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:530:5: note: in expansion of macro 'MAT3' MAT3(r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:529:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:528:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:527:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:619:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:646:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:641:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:641:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:641:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:639:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:638:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:677:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:723:5: note: in expansion of macro 'MAT3' MAT3( w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:708:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:707:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:706:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:706:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:706:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vrestrc': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:782:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1 ); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:848:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:843:5: note: in expansion of macro 'MAT3' MAT3(dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:842:5: note: in expansion of macro 'MAT3' MAT3(dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3' MAT3(dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3' MAT3(dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3' MAT3(dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:837:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:832:5: note: in expansion of macro 'MAT3' MAT3(uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:831:5: note: in expansion of macro 'MAT3' MAT3(uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3' MAT3(uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3' MAT3(uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3' MAT3(uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:826:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:821:5: note: in expansion of macro 'MAT3' MAT3(oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:820:5: note: in expansion of macro 'MAT3' MAT3(oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3' MAT3(oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3' MAT3(oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:817:5: note: in expansion of macro 'MAT3' MAT3(oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:815:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:814:5: note: in expansion of macro 'MAT3' MAT3(xin, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:812:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable] double dimfac; ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:50: /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:916:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:978:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:973:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:972:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:967:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:962:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:961:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:956:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:950:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:947:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:947:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:947:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:945:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:944:5: note: in expansion of macro 'MAT3' MAT3( xin, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c: In function 'Vextrac': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:1082:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/matvecd.c:1081:5: note: in expansion of macro 'MAT3' MAT3( xin, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/fem/vfetk.c:354: warning: Member polyEval(int numP, double p[], double c[][VMAXP], double xv[]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1528: warning: Member Vfetk_PDE_initElement(PDE *thee, int elementType, int chart, double tvx[][3], void *data) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1571: warning: Member Vfetk_PDE_initPoint(PDE *thee, int pointType, int chart, double txq[], double tU[], double tdU[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1741: warning: Member Vfetk_PDE_DFu_wv(PDE *thee, int key, double W[], double dW[][VAPBS_DIM], double V[], double dV[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1902: warning: Member Vfetk_PDE_bisectEdge(int dim, int dimII, int edgeType, int chart[], double vx[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1912: warning: Member Vfetk_PDE_mapBoundary(int dim, int dimII, int vertexType, int chart, double vx[3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1917: warning: Member Vfetk_PDE_markSimplex(int dim, int dimII, int simplexType, int faceType[VAPBS_NVS], int vertexType[VAPBS_NVS], int chart[], double vx[][3], void *simplex) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1998: warning: Member Vfetk_PDE_oneChart(int dim, int dimII, int objType, int chart[], double vx[][3], int dimV) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:86: warning: Member var (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:93: warning: Member diriCubeString (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:130: warning: Member neumCubeString (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:366: warning: Member dim_2DP1 (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:386: warning: Member lgr_2DP1[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:395: warning: Member lgr_2DP1x[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:402: warning: Member lgr_2DP1y[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:409: warning: Member lgr_2DP1z[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:437: warning: Member dim_3DP1 (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:438: warning: Member lgr_3DP1[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:446: warning: Member lgr_3DP1x[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:454: warning: Member lgr_3DP1y[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:462: warning: Member lgr_3DP1z[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:476: warning: Member P_DEG (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:482: warning: Member numP (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:483: warning: Member c[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:484: warning: Member cx[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:485: warning: Member cy[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:486: warning: Member cz[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:59: warning: Member Vpee_userDefined(Vpee *thee, SS *sm) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:62: warning: Member Vpee_ourSimp(Vpee *thee, SS *sm, int rcol) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:66: warning: Member Aprx_estNonlinResid(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:72: warning: Member Aprx_estLocalProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:77: warning: Member Aprx_estDualProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:237: warning: Member APOLparm_parseGRID(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:268: warning: Member APOLparm_parseMOL(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:287: warning: Member APOLparm_parseSRFM(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:309: warning: Member APOLparm_parseSRAD(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:328: warning: Member APOLparm_parseSWIN(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:347: warning: Member APOLparm_parseTEMP(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:366: warning: Member APOLparm_parseGAMMA(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:385: warning: Member APOLparm_parseCALCENERGY(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:438: warning: Member APOLparm_parseCALCFORCE(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:491: warning: Member APOLparm_parseBCONC(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:510: warning: Member APOLparm_parseSDENS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:529: warning: Member APOLparm_parseDPOS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:558: warning: Member APOLparm_parsePRESS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:196: warning: Member FEMparm_parseDOMAINLENGTH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:221: warning: Member FEMparm_parseETOL(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:244: warning: Member FEMparm_parseEKEY(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:276: warning: Member FEMparm_parseAKEYPRE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:303: warning: Member FEMparm_parseAKEYSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:333: warning: Member FEMparm_parseTARGETNUM(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:352: warning: Member FEMparm_parseTARGETRES(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:372: warning: Member FEMparm_parseMAXSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:391: warning: Member FEMparm_parseMAXVERT(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:411: warning: Member FEMparm_parseUSEMESH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:415: warning: Member MGparm_parseDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:446: warning: Member MGparm_parseCHGM(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:497: warning: Member MGparm_parseNLEV(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:516: warning: Member MGparm_parseETOL(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:539: warning: Member MGparm_parseGRID(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:570: warning: Member MGparm_parseGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:601: warning: Member MGparm_parseGAMMA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:616: warning: Member MGparm_parseGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:668: warning: Member MGparm_parseCGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:699: warning: Member MGparm_parseFGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:730: warning: Member MGparm_parseCGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:782: warning: Member MGparm_parseFGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:834: warning: Member MGparm_parsePDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:872: warning: Member MGparm_parseOFRAC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:892: warning: Member MGparm_parseASYNC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:912: warning: Member MGparm_parseUSEAQUA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:62: warning: Member NOsh_parseREAD(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:66: warning: Member NOsh_parsePRINT(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:70: warning: Member NOsh_parseELEC(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:75: warning: Member NOsh_parseAPOLAR(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:80: warning: Member NOsh_parseFEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:86: warning: Member NOsh_parseMG(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:92: warning: Member NOsh_parseAPOL(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:98: warning: Member NOsh_setupCalcMG(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:103: warning: Member NOsh_setupCalcMGAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:108: warning: Member NOsh_setupCalcMGMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:113: warning: Member NOsh_setupCalcMGPARA(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:118: warning: Member NOsh_setupCalcFEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:123: warning: Member NOsh_setupCalcFEMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:128: warning: Member NOsh_setupCalcAPOL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:491: warning: Member NOsh_parseREAD_MOL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:568: warning: Member NOsh_parseREAD_PARM(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:632: warning: Member NOsh_parseREAD_DIEL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:683: warning: Member NOsh_parseREAD_KAPPA(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:726: warning: Member NOsh_parseREAD_POTENTIAL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:769: warning: Member NOsh_parseREAD_CHARGE(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:812: warning: Member NOsh_parseREAD_MESH(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:87: warning: Member PBEparm_getzmem(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:91: warning: Member PBEparm_getLmem(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:95: warning: Member PBEparm_getmembraneDiel(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:99: warning: Member PBEparm_getmemv(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:368: warning: Member PBEparm_parseLPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:375: warning: Member PBEparm_parseNPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:382: warning: Member PBEparm_parseMOL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:401: warning: Member PBEparm_parseLRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:408: warning: Member PBEparm_parseNRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:415: warning: Member PBEparm_parseSMPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:474: warning: Member PBEparm_parseBCFL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:555: warning: Member PBEparm_parseION(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:652: warning: Member PBEparm_parsePDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:671: warning: Member PBEparm_parseSDENS(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:690: warning: Member PBEparm_parseSDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:709: warning: Member PBEparm_parseSRFM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:780: warning: Member PBEparm_parseSRAD(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:799: warning: Member PBEparm_parseSWIN(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:818: warning: Member PBEparm_parseTEMP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:837: warning: Member PBEparm_parseUSEMAP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:895: warning: Member PBEparm_parseCALCENERGY(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:948: warning: Member PBEparm_parseCALCFORCE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1005: warning: Member PBEparm_parseZMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1025: warning: Member PBEparm_parseLMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1044: warning: Member PBEparm_parseMDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1063: warning: Member PBEparm_parseMEMV(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1084: warning: Member PBEparm_parseWRITE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1169: warning: Member PBEparm_parseWRITEMAT(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:277: warning: Member Vacc_vdwAcc(Vacc *thee, double center[3]) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:307: warning: Member Vacc_ivdwAcc(Vacc *thee, double center[3], double radius) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:679: warning: Member Vacc_writeGMV(Vacc *thee, double radius, int meth, Gem *gm, char *iodev, char *iofmt, char *iohost, char *iofile) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:1264: warning: Member Vacc_SASAPos(Vacc *thee, double radius) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:1289: warning: Member Vacc_atomSASAPos(Vacc *thee, double radius, Vatom *atom, int mode) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:80: warning: The following parameters of ivdwAccExclus(Vacc *thee, double center[3], double radius, int atomID) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/generic/vacc.c:493: warning: The following parameters of splineAcc(Vacc *thee, double center[VAPBS_DIM], double win, double infrad, VclistCell *cell) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/generic/valist.c:186: warning: Member Valist_readPDBSerial(Valist *thee, Vio *sock, int *serial) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:206: warning: Member Valist_readPDBAtomName(Valist *thee, Vio *sock, char atomName[VMAX_ARGLEN]) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:224: warning: Member Valist_readPDBResidueName(Valist *thee, Vio *sock, char resName[VMAX_ARGLEN]) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:242: warning: Member Valist_readPDBResidueNumber(Valist *thee, Vio *sock, int *resSeq) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:298: warning: Member Valist_readPDBAtomCoord(Valist *thee, Vio *sock, double *coord) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:316: warning: Member Valist_readPDBChargeRadius(Valist *thee, Vio *sock, double *charge, double *radius) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:344: warning: Member Valist_readPDB_throughXYZ(Valist *thee, Vio *sock, int *serial, char atomName[VMAX_ARGLEN], char resName[VMAX_ARGLEN], int *resSeq, double *x, double *y, double *z) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:424: warning: Member Valist_getAtomStorage(Valist *thee, Vatom **plist, int *pnlist, int *pnatoms) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:480: warning: Member Valist_setAtomArray(Valist *thee, Vatom **plist, int nlist, int natoms) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:60: warning: Member Valist_whiteChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:61: warning: Member Valist_commChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:62: warning: Member Valist_xmlwhiteChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:128: warning: Member VCLIST_INFLATE (macro definition) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:90: warning: Member Vclist_getMolDims(Vclist *thee, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM], double *r_max) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:125: warning: Member Vclist_setupGrid(Vclist *thee) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:174: warning: Member Vclist_storeParms(Vclist *thee, Valist *alist, double max_radius, int npts[VAPBS_DIM], Vclist_DomainMode mode, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM]) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:231: warning: Member Vclist_gridSpan(Vclist *thee, Vatom *atom, int imin[VAPBS_DIM], int imax[VAPBS_DIM]) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:262: warning: Member Vclist_arrayIndex(Vclist *thee, int i, int j, int k) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:270: warning: Member Vclist_assignAtoms(Vclist *thee) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:117: warning: Member treesetup(Vgreen *thee) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:126: warning: Member treecleanup(Vgreen *thee) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:135: warning: Member treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, double *qtar, int numtars, double *tpengtar, double *x, double *y, double *z, double *q, int numpars, double *fx, double *fy, double *fz, int iflag, int farrdim, int arrdim) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:465: warning: Member MAX_HASH_DIM (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:579: warning: Member OS_SEP_STR (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:580: warning: Member OS_SEP_CHAR (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:607: warning: Member ANNOUNCE_FUNCTION (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:608: warning: Member WARN_UNTESTED (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:609: warning: Member WARN_PARTTESTED (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:660: warning: Member VCHANNELEDMESSAGE0(channel, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:665: warning: Member VCHANNELEDMESSAGE1(channel, msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:672: warning: Member VCHANNELEDMESSAGE2(channel, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:679: warning: Member VCHANNELEDMESSAGE3(channel, msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:686: warning: Member VMESSAGE0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:687: warning: Member VMESSAGE1(msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:688: warning: Member VMESSAGE2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:689: warning: Member VMESSAGE3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:691: warning: Member VERRMSG0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:692: warning: Member VERRMSG1(msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:693: warning: Member VERRMSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:694: warning: Member VERRMSG3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:738: warning: Member VASSERT_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:748: warning: Member VASSERT_MSG1(cnd, msg, arg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:760: warning: Member VASSERT_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:832: warning: Member VWARN_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:845: warning: Member VWARN_MSG1(cnd, msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:860: warning: Member VWARN_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:906: warning: Member VABORT_MSG0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:914: warning: Member VABORT_MSG1(msg, arg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:924: warning: Member VABORT_MSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:951: warning: Member PRINT_INT(expr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:952: warning: Member PRINT_DBL(expr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:955: warning: Member VMALLOC(vmem, n, type) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:957: warning: Member VFREE(vmem, n, type, ptr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:959: warning: Member VFILL(vec, n, val) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:966: warning: Member VCOPY(srcvec, dstvec, i, n) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:975: warning: Member VAT(array, i) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:976: warning: Member RAT(array, i) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member Vrc_Codes (typedef) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member Vsol_Meth (typedef) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:973: warning: Member wrap_text(char *str, int right_margin, int left_padding) (function) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member data (variable) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:64: warning: Member MAT2(mat, dx, dy) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:68: warning: Member RAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:71: warning: Member VAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:76: warning: Member MAT3(mat, dx, dy, dz) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:81: warning: Member RAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:84: warning: Member VAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vpbe.c:62: warning: Member MAX_SPLINE_WINDOW (macro definition) of file vpbe.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:66: warning: Member IJK(i, j, k) (macro definition) of file vgrid.c is not documented. [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c /builddir/build/BUILD/apbs/src/mg/vgrid.c:68: warning: Member MCwhiteChars (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:69: warning: Member MCcommChars (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:70: warning: Member Vcompare (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:71: warning: Member Vprecision[26] (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vopot.c:113: warning: Member IJK(i, j, k) (macro definition) of file vopot.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:1406: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:2833: warning: Member bcCalcOrig(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3125: warning: Member gridPointIsValid(int i, int j, int k, int nx, int ny, int nz) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3308: warning: Member packAtoms(double *ax, double *ay, double *az, double *charge, double *size, Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3333: warning: Member packUnpack(int nx, int ny, int nz, int ngrid, double *gx, double *gy, double *gz, double *value, Vpmg *thee, int pack) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3402: warning: Member bcflnew(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3592: warning: Member bcfl_sdh(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3858: warning: Member bcfl_mdh(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3985: warning: Member bcfl_mem(double zmem, double L, double eps_m, double eps_w, double V, double xkappa, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:4164: warning: Member bcfl_map(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:6674: warning: Member markFrac(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *xarray, double *yarray, double *zarray) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:10250: warning: Member fillcoPermanentInduced(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:2569: warning: The following parameters of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) are not documented: parameter 'size' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1359: warning: argument 'hz' of command @param is not found in the argument list of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) /builddir/build/BUILD/apbs/src/mg/vpmg.c:6839: warning: The following parameters of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) are not documented: parameter 'rtot' parameter 'hzed' /builddir/build/BUILD/apbs/src/mg/vpmg.c:3482: warning: The following parameters of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) are not documented: parameter 'r' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6301: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6438: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6551: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1153: warning: The following parameters of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1709: warning: The following parameters of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1866: warning: The following parameters of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1898: warning: The following parameters of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) are not documented: parameter 'srfm' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6888: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented: parameter 'thee' parameter 'solution' [ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c /builddir/build/BUILD/apbs/src/mg/vpmg.h:105: warning: Member VPMGMAXPART (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1392: warning: Member VCUB(x) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1393: warning: Member VLOG(x) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1395: warning: Member IJK(i, j, k) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1396: warning: Member IJKx(j, k, i) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1397: warning: Member IJKy(i, k, j) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1398: warning: Member IJKz(i, j, k) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1399: warning: Member VFCHI(iint, iflt) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058: warning: The following parameters of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) are not documented: parameter 'size' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364: warning: The following parameters of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) are not documented: parameter 'rtot' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109: warning: The following parameters of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) are not documented: parameter 'r' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:998: warning: The following parameters of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009: warning: The following parameters of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020: warning: The following parameters of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031: warning: The following parameters of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) are not documented: parameter 'srfm' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented: parameter 'thee' parameter 'solution' /builddir/build/BUILD/apbs/src/mg/vpmgp.c:294: warning: Member coarsenThis(int nOld) (function) of file vpmgp.c is not documented. In file included from /builddir/build/BUILD/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c:94:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable] int ierror = 0; ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:262:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, nlev); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:229:12: warning: unused variable 'tsolve' [-Wunused-variable] double tsolve = 0.0; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:228:12: warning: unused variable 'tsetupc' [-Wunused-variable] double tsetupc = 0.0; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:227:12: warning: unused variable 'tsetupf' [-Wunused-variable] double tsetupf = 0.0; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'oh' [-Wunused-variable] double oh = 0.0; ^~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:225:12: warning: unused variable 'bf' [-Wunused-variable] double bf = 0.0; ^~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:221:12: warning: unused variable 'epsmac' [-Wunused-variable] double epsmac = 0.0; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c:298:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c:557:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] } while (*iters<*itmax && (rsnrm/rsden) > *errtol); ~~~~~~^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:575:22: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] int num_nf_oper, num_narrc_oper; ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:651:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] *iretot = num_narr * *narr ~~~~~~~~~~~~~~~~ + (num_nf + num_nf_oper) * *nf ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (num_narrc + num_narrc_oper) * *narrc ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + n_band ^~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c:649:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] + (num_nf + num_nf_oper) * *nf ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/apbs/src/routines.h:499: warning: The following parameters of energyAPOL(APOLparm *apolparm, double sasa, double sav, double atomsasa[], double atomwcaEnergy[], int numatoms) are not documented: parameter 'apolparm' /builddir/build/BUILD/apbs/src/routines.h:596: warning: The following parameters of killFE(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vfetk *fetk[NOSH_MAXCALC], Gem *gem[NOSH_MAXMOL]) are not documented: parameter 'nosh' /builddir/build/BUILD/apbs/src/routines.h:248: warning: The following parameters of killMG(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vpmgp *pmgp[NOSH_MAXCALC], Vpmg *pmg[NOSH_MAXCALC]) are not documented: parameter 'nosh' /builddir/build/BUILD/apbs/src/routines.c:768: warning: argument 'charge' of command @param is not found in the argument list of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:195: warning: The following parameters of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.c:573: warning: argument 'kappa' of command @param is not found in the argument list of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:161: warning: The following parameters of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.c:677: warning: argument 'pot' of command @param is not found in the argument list of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:178: warning: The following parameters of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.h:604: warning: argument 'nosh' of command @param is not found in the argument list of preRefineFE(int i, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC]) /builddir/build/BUILD/apbs/src/routines.h:480: warning: The following parameters of printApolForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:431: warning: The following parameters of printElecEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:467: warning: The following parameters of printElecForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:418: warning: The following parameters of printEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:454: warning: The following parameters of printForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.c:3953: warning: argument 'i' of command @param is not found in the argument list of solveFE(int icalc, PBEparm *pbeparm, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC]) [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:78:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:55:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:54:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:73:5: note: in expansion of macro 'MAT3' MAT3(y, *nx - 2, *ny - 2, *nz - 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:72:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:94:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:93:5: note: in expansion of macro 'MAT3' MAT3(x, *nx - 2, *ny - 2, *nz - 2); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:261:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:112:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:111:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:131:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:152:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:177:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:176:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:193:9: warning: unused variable 'nproc' [-Wunused-variable] int nproc = 1; ^~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:213:5: note: in expansion of macro 'MAT3' MAT3(gzc, *nx, *ny, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:212:5: note: in expansion of macro 'MAT3' MAT3(gyc, *nx, *nz, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:211:5: note: in expansion of macro 'MAT3' MAT3(gxc, *ny, *nz, 2); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:210:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:257:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:290:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] double xdum; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:288:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect, iflag; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:288:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect, iflag; ^~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:317:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:332:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' MAT3( fcf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' MAT3( ccf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' MAT3( tcf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' MAT3(a3cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:365:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:364:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' MAT3(a2cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:363:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' MAT3(a1cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:362:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' MAT3(gzcf, *nxf, *nyf, 4); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' MAT3(gycf, *nxf, *nzf, 4); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' MAT3(gxcf, *nyf, *nzf, 4); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' MAT3( tc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' MAT3( a3c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:610:5: note: in expansion of macro 'MAT3' MAT3( a2c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:609:5: note: in expansion of macro 'MAT3' MAT3( a1c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:608:5: note: in expansion of macro 'MAT3' MAT3( gzc, *nx, *ny, 4); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:607:5: note: in expansion of macro 'MAT3' MAT3( gyc, *nx, *nz, 4); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:606:5: note: in expansion of macro 'MAT3' MAT3( gxc, *ny, *nz, 4); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:401:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:400:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:399:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:398:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c:397:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c:909:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ sh: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: dvips: command not found error: Problems running dvips. Check your installation! [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c:57:5: note: in expansion of macro 'MAT2' MAT2(abd, *lda, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c:194:5: note: in expansion of macro 'MAT2' MAT2(abd, *lda, 1); ^~~~ [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mypdec.c [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs/src/pmgc/newtond.c /builddir/build/BUILD/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe': /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:91:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe': /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:218:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:218:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:218:15: warning: unused variable 'ii' [-Wunused-variable] int n, i, ii, ipara, ivect; ^~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:217:9: warning: unused variable 'iion' [-Wunused-variable] int iion; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:214:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:214:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:214:12: warning: unused variable 'argument' [-Wunused-variable] double argument, poly, fact; ^~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:213:29: warning: unused variable 'am_pos' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:213:21: warning: unused variable 'am_neg' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:212:18: warning: unused variable 'zu2' [-Wunused-variable] double zcf2, zu2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:212:12: warning: unused variable 'zcf2' [-Wunused-variable] double zcf2, zu2; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:211:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec': /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:340:9: warning: unused variable 'n' [-Wunused-variable] int n = *nx * *ny * *nz; ^ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:339:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg': /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:355:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:355:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:352:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg, iion; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe': /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:428:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:428:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] int ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:427:15: warning: unused variable 'ii' [-Wunused-variable] int n, i, ii; ^~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:424:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:424:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:424:12: warning: unused variable 'argument' [-Wunused-variable] double argument, poly, fact; ^~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:423:29: warning: unused variable 'am_pos' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:423:21: warning: unused variable 'am_neg' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:422:18: warning: unused variable 'zu2' [-Wunused-variable] double zcf2, zu2; ^~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:422:12: warning: unused variable 'zcf2' [-Wunused-variable] double zcf2, zu2; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:421:15: warning: unused variable 'iion' [-Wunused-variable] int ideg, iion; ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mypdec.c:421:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg, iion; ^~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/newtond.h:57, from /builddir/build/BUILD/apbs/src/pmgc/newtond.c:56: /builddir/build/BUILD/apbs/src/pmgc/newtond.c: In function 'Vfnewton': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2' MAT2( iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/newtond.c: In function 'Vnewton': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/newtond.c: In function 'Vgetjac': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/powerd.c /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv': /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:81:9: warning: unused variable 'maxlev' [-Wunused-variable] int maxlev; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable] int ierror; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2': /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:216:12: warning: unused variable 'orsnrm_t' [-Wunused-variable] double orsnrm_t; ^~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:215:12: warning: unused variable 'rsden_t' [-Wunused-variable] double rsden_t; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:214:12: warning: unused variable 'rsnrm_t' [-Wunused-variable] double rsnrm_t; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:213:9: warning: unused variable 'iters_t' [-Wunused-variable] int iters_t; ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:212:9: warning: unused variable 'iok_t' [-Wunused-variable] int iok_t; ^~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:210:9: warning: unused variable 'numlev' [-Wunused-variable] int numlev; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:205:12: warning: unused variable 'tsolve' [-Wunused-variable] double tsolve; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:204:12: warning: unused variable 'tsetupc' [-Wunused-variable] double tsetupc; /// @todo: Doc ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:203:12: warning: unused variable 'tsetupf' [-Wunused-variable] double tsetupf; /// @todo: Doc ^~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'oh' [-Wunused-variable] double oh; /// @todo: Doc ^~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:201:12: warning: unused variable 'bf' [-Wunused-variable] double bf; /// @todo: Doc ^~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:199:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable] double omegal; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c:197:12: warning: unused variable 'epsmac' [-Wunused-variable] double epsmac; /// @todo: Doc ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/powerd.c:50: /builddir/build/BUILD/apbs/src/pmgc/powerd.c: In function 'Vpower': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/powerd.c:69:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/powerd.c:66:9: warning: unused variable 'skipIters' [-Wunused-variable] int skipIters = 0; ^~~~~~~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/powerd.c:50: /builddir/build/BUILD/apbs/src/pmgc/powerd.c: In function 'Vipower': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/powerd.c:183:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/powerd.c: In function 'Vmpower': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/powerd.c:306:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/smoothd.c [ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /builddir/build/BUILD/apbs/build/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c In file included from /builddir/build/BUILD/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:74:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:69:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable] double errd; ^~~~ In file included from /builddir/build/BUILD/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:50: /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:177:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:166:33: warning: unused variable 'ivariv' [-Wunused-variable] int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid; ^~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:354:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c:592:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((rsnrm / rsden) <= *errtol) ~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 50%] Built target apbs_pmgc make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src /builddir/build/BUILD/apbs/build/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= Scanning dependencies of target apbs make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 51%] Linking C shared library ../../lib/libapbs.so cd /builddir/build/BUILD/apbs/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libapbs.so.1 -o ../../lib/libapbs.so.1 generic/CMakeFiles/apbs_generic.dir/nosh.c.o generic/CMakeFiles/apbs_generic.dir/mgparm.c.o generic/CMakeFiles/apbs_generic.dir/femparm.c.o generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o generic/CMakeFiles/apbs_generic.dir/apolparm.c.o generic/CMakeFiles/apbs_generic.dir/vacc.c.o generic/CMakeFiles/apbs_generic.dir/valist.c.o generic/CMakeFiles/apbs_generic.dir/vatom.c.o generic/CMakeFiles/apbs_generic.dir/vpbe.c.o generic/CMakeFiles/apbs_generic.dir/vcap.c.o generic/CMakeFiles/apbs_generic.dir/vclist.c.o generic/CMakeFiles/apbs_generic.dir/vstring.c.o generic/CMakeFiles/apbs_generic.dir/vparam.c.o generic/CMakeFiles/apbs_generic.dir/vgreen.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o mg/CMakeFiles/apbs_mg.dir/vgrid.c.o mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o mg/CMakeFiles/apbs_mg.dir/vopot.c.o mg/CMakeFiles/apbs_mg.dir/vpmg.c.o mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs/build/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libapbs.so.1 ../../lib/libapbs.so.1 ../../lib/libapbs.so make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 51%] Built target apbs make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src /builddir/build/BUILD/apbs/build/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= Scanning dependencies of target mgmesh make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' Scanning dependencies of target value make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build Scanning dependencies of target apbs-bin make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 52%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /builddir/build/BUILD/apbs/tools/mesh/mgmesh.c [ 55%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o [ 55%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o cd /builddir/build/BUILD/apbs/build/src && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/main.c.o -c /builddir/build/BUILD/apbs/src/main.c cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/value.dir/value.c.o -c /builddir/build/BUILD/apbs/tools/mesh/value.c In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/value.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/value.c:33:9: warning: unused variable 'inorm' [-Wunused-variable] int inorm; ^~~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs/tools/mesh/value.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/main.c: In function 'main': /builddir/build/BUILD/apbs/src/main.c:106:11: warning: unused variable 'gm' [-Wunused-variable] void *gm[NOSH_MAXMOL]; ^~ /builddir/build/BUILD/apbs/src/main.c:105:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] void *fetk[NOSH_MAXCALC]; ^~~~ /builddir/build/BUILD/apbs/src/main.c:92:14: warning: unused variable 'feparm' [-Wunused-variable] FEMparm *feparm = VNULL; ^~~~~~ /builddir/build/BUILD/apbs/src/main.c:86:17: warning: unused variable 'te' [-Wunused-variable] clock_t ts, te; ^~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/main.c:70: /builddir/build/BUILD/apbs/src/main.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 56%] Linking C executable ../../../tools/bin/mgmesh cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../../../tools/bin/mgmesh -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 57%] Linking C executable ../../../tools/bin/value cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/value.dir/value.c.o -o ../../../tools/bin/value -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 57%] Built target mgmesh make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 57%] Built target value make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= Scanning dependencies of target dxmath make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 59%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /builddir/build/BUILD/apbs/tools/mesh/dxmath.c Scanning dependencies of target mergedx make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 60%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /builddir/build/BUILD/apbs/tools/mesh/mergedx.c In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/dxmath.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 61%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o cd /builddir/build/BUILD/apbs/build/src && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/routines.c.o -c /builddir/build/BUILD/apbs/src/routines.c In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs/src/routines.c:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs/src/routines.c:314:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs/src/routines.c:400:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs/src/routines.c:402:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs/src/routines.c:1096:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] iparm, ^~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs/src/routines.c:1438:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] MGparm *mgparm; ^~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs/src/routines.c:1657:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] char mxtype[3]; ^~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs/src/routines.c:3328:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] scalar, ^~~~~~ /builddir/build/BUILD/apbs/src/routines.c:3327:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] double temp, ^~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs/src/routines.c:4329:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] sav, /**< @todo document */ ^~~ /builddir/build/BUILD/apbs/src/routines.c:4328:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] double sasa, /**< @todo document */ ^~~~ /builddir/build/BUILD/apbs/src/routines.c:4322:12: warning: unused variable 'ts' [-Wunused-variable] time_t ts; /**< Temporary timing variable for debugging (PCE) */ ^~ /builddir/build/BUILD/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs/src/routines.c:4586:13: warning: unused variable 'apos' [-Wunused-variable] *apos; ^~~~ /builddir/build/BUILD/apbs/src/routines.c:4570:46: warning: unused variable 'ts_sub' [-Wunused-variable] time_t ts, ts_main, ts_sub; ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /builddir/build/BUILD/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 63%] Linking C executable ../../../tools/bin/dxmath cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 /builddir/build/BUILD/apbs/tools/mesh/mergedx.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/mergedx.c:81:13: warning: 'ny' may be used uninitialized in this function [-Wmaybe-uninitialized] mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/mergedx.c:81:13: warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/mergedx.c:81:13: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/dxmath.dir/dxmath.c.o -o ../../../tools/bin/dxmath -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 63%] Built target dxmath make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= Scanning dependencies of target smooth make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 64%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /builddir/build/BUILD/apbs/tools/mesh/smooth.c In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/smooth.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 65%] Linking C executable ../../../tools/bin/mergedx cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, 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command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.png"' /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/mergedx.dir/mergedx.c.o -o ../../../tools/bin/mergedx -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.png"' sh: dot: command not found error: 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running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.png"' sh: dot: command not found make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/graph_legend.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/graph_legend.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.png"' [ 65%] Built target mergedx sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.png"' make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= uildAd.c... Generating code for file src/pmgc/buildAd.h... Generating code for file src/pmgc/buildBd.c... Generating code for file src/pmgc/buildBd.h... Generating code for file src/pmgc/buildGd.c... Generating code for file src/pmgc/buildGd.h... Generating code for file src/pmgc/buildPd.c... Generating code for file src/pmgc/buildPd.h... Generating code for file src/pmgc/cgd.c... Generating code for file src/pmgc/cgd.h... Generating code for file src/pmgc/gsd.c... Generating code for file src/pmgc/gsd.h... Generating code for file src/pmgc/matvecd.c... Generating code for file src/pmgc/matvecd.h... Generating code for file src/pmgc/mgcsd.c... Generating code for file src/pmgc/mgcsd.h... Generating code for file src/pmgc/mgdrvd.c... Generating code for file src/pmgc/mgdrvd.h... Generating code for file src/pmgc/mgfasd.c... Generating code for file src/pmgc/mgfasd.h... Generating code for file src/pmgc/mgsubd.c... Generating code for file src/pmgc/mgsubd.h... Generating code for file src/pmgc/mikpckd.c... Generating code for file src/pmgc/mikpckd.h... Generating code for file src/pmgc/mlinpckd.c... Generating code for file src/pmgc/mlinpckd.h... Generating code for file src/pmgc/mypdec.c... Generating code for file src/pmgc/mypdec.h... Generating code for file src/pmgc/newdrvd.c... Generating code for file src/pmgc/newdrvd.h... Generating code for file src/pmgc/newtond.c... Generating code for file src/pmgc/newtond.h... Generating code for file src/pmgc/powerd.c... Generating code for file src/pmgc/powerd.h... Generating code for file src/pmgc/smoothd.c... Generating code for file src/pmgc/smoothd.h... Generating code for file src/routines.c... Generating code for file src/routines.h... Generating file documentation... Generating docs for file src/apbs.h... Generating docs for file src/fem/vcsm.c... Generating docs for file src/fem/vcsm.h... Generating docs for file src/fem/vfetk.c... Generating docs for file src/fem/vfetk.h... Generating docs for file src/fem/vpee.c... Generating docs for file src/fem/vpee.h... Generating docs for file src/generic/apolparm.c... Generating docs for file src/generic/femparm.c... Generating docs for file src/generic/femparm.h... Generating docs for file src/generic/mgparm.c... Generating docs for file src/generic/mgparm.h... Generating docs for file src/generic/nosh.c... Generating docs for file src/generic/nosh.h... Generating docs for file src/generic/pbeparm.c... Generating docs for file src/generic/pbeparm.h... Generating docs for file src/generic/vacc.c... Generating docs for file src/generic/vacc.h... Generating docs for file src/generic/valist.c... Generating docs for file src/generic/valist.h... Generating docs for file src/generic/vatom.c... Generating docs for file src/generic/vatom.h... Generating docs for file src/generic/vcap.c... Generating docs for file src/generic/vcap.h... Generating docs for file src/generic/vclist.c... Generating docs for file src/generic/vclist.h... Generating docs for file src/generic/vgreen.c... Generating docs for file src/generic/vgreen.h... Generating docs for file src/generic/vhal.h... Generating docs for file src/generic/vmatrix.h... Generating docs for file src/generic/vparam.c... Generating docs for file src/generic/vparam.h... Generating docs for file src/generic/vpbe.c... Generating docs for file src/generic/vpbe.h... Generating docs for file src/generic/vstring.c... Generating docs for file src/generic/vstring.h... Generating docs for file src/generic/vunit.h... Generating docs for file src/main.c... Generating docs for file src/mg/vgrid.c... Generating docs for file src/mg/vgrid.h... Generating docs for file src/mg/vmgrid.c... Generating docs for file src/mg/vmgrid.h... Generating docs for file src/mg/vopot.c... Generating docs for file src/mg/vopot.h... Generating docs for file src/mg/vpmg.c... Generating docs for file src/mg/vpmg.h... Generating docs for file src/mg/vpmgp.c... Generating docs for file src/mg/vpmgp.h... Generating docs for file src/routines.c... Generating docs for file src/routines.h... Generating page documentation... Generating docs for page deprecated... Generating docs for page bug... Generating group documentation... Generating class documentation... Generating docs for compound AtomForce... Generating docs for compound sAPOLparm... Generating docs for compound sFEMparm... Generating docs for compound sMGparm... Generating docs for compound sNOsh... Generating docs for compound sNOsh_calc... Generating docs for compound sPBEparm... Generating docs for compound sVacc... Generating docs for compound sVaccSurf... Generating docs for compound sValist... Generating docs for compound sVatom... Generating docs for compound sVclist... Generating docs for compound sVclistCell... Generating docs for compound sVcsm... Generating docs for compound sVfetk... Generating docs for compound sVfetk_LocalVar... Generating docs for compound sVgreen... Generating docs for compound sVgrid... Generating docs for compound sVmgrid... Generating docs for compound sVopot... Generating docs for compound sVparam_AtomData... Generating docs for compound sVpbe... Generating docs for compound sVpee... Generating docs for compound sVpmg... Generating docs for compound sVpmgp... Generating docs for compound Vparam... Generating docs for compound Vparam_ResData... Generating namespace index... Generating graph info page... Generating directory documentation... Generating dependency graph for directory src/fem Generating dependency graph for directory src/mg Generating dependency graph for directory src/pmgc Generating dependency graph for directory src Generating bitmaps for formulas in HTML... Generating image form_0.png for formula Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running dot... Generating dot graphs using 5 parallel threads... Running dot for graph 1/79 Running dot for graph 2/79 Running dot for graph 3/79 Running dot for graph 4/79 Running dot for graph 5/79 Running dot for graph 6/79 Running dot for graph 7/79 Running dot for graph 8/79 Running dot for graph 9/79 Running dot for graph 10/79 Running dot for graph 11/79 Running dot for graph 12/79 Running dot for graph 13/79 Running dot for graph 14/79 Running dot for graph 15/79 Running dot for graph 16/79 Running dot for graph 17/79 Running dot for graph 18/79 Running dot for graph 19/79 Running dot for graph 20/79 Running dot for graph 21/79 Running dot for graph 22/79 Running dot for graph 23/79 Running dot for graph 24/79 Running dot for graph 25/79 Running dot for graph 26/79 Running dot for graph 27/79 Running dot for graph 28/79 Running dot for graph 29/79 Running dot for graph 30/79 Running dot for graph 31/79 Running dot for graph 32/79 Running dot for graph 33/79 Running dot for graph 34/79 Running dot for graph 35/79 Running dot for graph 36/79 Running dot for graph 37/79 Running dot for graph 38/79 Running dot for graph 39/79 Running dot for graph 40/79 Running dot for graph 41/79 Running dot for graph 42/79 Running dot for graph 43/79 Running dot for graph 44/79 Running dot for graph 45/79 Running dot for graph 46/79 Running dot for graph 47/79 Running dot for graph 48/79 Running dot for graph 49/79 Running dot for graph 50/79 Running dot for graph 51/79 Running dot for graph 52/79 Running dot for graph 53/79 Running dot for graph 54/79 Running dot for graph 55/79 Running dot for graph 56/79 Running dot for graph 57/79 Running dot for graph 58/79 Running dot for graph 59/79 Running dot for graph 60/79 Running dot for graph 61/79 Running dot for graph 62/79 Running dot for graph 63/79 Running dot for graph 64/79 Running dot for graph 65/79 Running dot for graph 66/79 Running dot for graph 67/79 Running dot for graph 68/79 Running dot for graph 69/79 Running dot for graph 70/79 RunnScanning dependencies of target similarity make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 67%] Linking C executable ../../../tools/bin/smooth cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 [ 68%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/smooth.dir/smooth.c.o -o ../../../tools/bin/smooth -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /builddir/build/BUILD/apbs/tools/mesh/similarity.c make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 68%] Built target smooth make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/similarity.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ Scanning dependencies of target multivalue make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 69%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /builddir/build/BUILD/apbs/tools/mesh/multivalue.c ing dot for graph 71/79 Running dot for graph 72/79 Running dot for graph 73/79 Running dot for graph 74/79 Running dot for graph 75/79 Running dot for graph 76/79 Running dot for graph 77/79 Running dot for graph 78/79 Running dot for graph 79/79 Patching output file 1/54 Patching output file 2/54 Patching output file 3/54 Patching output file 4/54 Patching output file 5/54 Patching output file 6/54 Patching output file 7/54 Patching output file 8/54 Patching output file 9/54 Patching output file 10/54 Patching output file 11/54 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Patching output file 49/54 Patching output file 50/54 Patching output file 51/54 Patching output file 52/54 Patching output file 53/54 Patching output file 54/54 lookup cache used 2026/65536 hits=58645 misses=2092 finished... make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/multivalue.c:42: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 69%] Built target doc make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= /builddir/build/BUILD/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs/src/routines.c:1680:34: warning: '-PE' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank); ^~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 1038 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:1694:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writematstem, "mat"); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Scanning dependencies of target benchmark make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 71%] Linking C executable ../../../tools/bin/multivalue cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 /builddir/build/BUILD/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs/src/routines.c:1760:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ [ 72%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /builddir/build/BUILD/apbs/tools/mesh/benchmark.c /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/multivalue.dir/multivalue.c.o -o ../../../tools/bin/multivalue -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' /builddir/build/BUILD/apbs/tools/mesh/benchmark.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:28:12: warning: unused variable 'grid' [-Wunused-variable] Vgrid *grid; ^~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:58: warning: unused variable 'sum' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:51: warning: unused variable 'value' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:44: warning: unused variable 'pt' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:38: warning: variable 'zmin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:32: warning: variable 'ymin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:26: warning: variable 'xmin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:20: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:16: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:18:12: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:17:27: warning: unused variable 'k' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:17:24: warning: unused variable 'j' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:17:21: warning: unused variable 'i' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs/tools/mesh/benchmark.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 72%] Built target multivalue make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend [ 73%] Linking C executable ../../../tools/bin/similarity cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= /builddir/build/BUILD/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs/src/routines.c:1994:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/similarity.dir/similarity.c.o -o ../../../tools/bin/similarity -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp Scanning dependencies of target uhbd_asc2bin make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 75%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c [ 76%] Linking C executable ../../../tools/bin/benchmark cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 [ 76%] Built target similarity make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/benchmark.dir/benchmark.c.o -o ../../../tools/bin/benchmark -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp In file included from /builddir/build/BUILD/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_grid' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro 'MAT3' MAT3(grid, MXGRD, MXGRD, MXGRD); ^~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ Scanning dependencies of target analysis make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", flnm); ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", newfile); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%s", title); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &scale); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &grdflg); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &one); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &im); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &jm); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &h); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &ox); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &oy); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &oz); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum5); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum6); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum7); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum8); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &kk); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &im); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &jm); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", RAT3(grid, i, j, k)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs/src/routines.c:2563:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "txt"); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:2554:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx.gz"); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:2537:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "mcsf"); ^~ ~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:2530:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "ucd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:2544:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "grd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c:2520:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx"); ^~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Built target benchmark make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 77%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /builddir/build/BUILD/apbs/tools/mesh/analysis.c make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= [ 78%] Linking C executable ../../../tools/bin/uhbd_asc2bin cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 Scanning dependencies of target dx2mol make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../../../tools/bin/uhbd_asc2bin -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 80%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/analysis.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /builddir/build/BUILD/apbs/tools/mesh/dx2mol.c /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs/src/routines.c:2605:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' /builddir/build/BUILD/apbs/tools/mesh/analysis.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/analysis.c:276:5: warning: 'minG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minG2pt[0], minG2pt[1], minG2pt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:276:5: warning: 'minG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:276:5: warning: 'minG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:268:5: warning: 'minSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minSpt[0], minSpt[1], minSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:268:5: warning: 'minSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:268:5: warning: 'minSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:272:5: warning: 'maxG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxG2pt[0], maxG2pt[1], maxG2pt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:272:5: warning: 'maxG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:272:5: warning: 'maxG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:264:5: warning: 'maxSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxSpt[0], maxSpt[1], maxSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:264:5: warning: 'maxSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs/tools/mesh/analysis.c:274:5: warning: 'minG2' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min gradient-squared value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minG2); ~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:270:5: warning: 'maxG2' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max gradient-squared value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxG2); ~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:262:5: warning: 'maxS' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxS); ~~~~~ /builddir/build/BUILD/apbs/tools/mesh/analysis.c:264:5: warning: 'maxSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxSpt[0], maxSpt[1], maxSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs/src/routines.c:2638:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ [ 80%] Built target uhbd_asc2bin make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend /builddir/build/BUILD/apbs/tools/mesh/dx2mol.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/dx2mol.c:22:12: warning: unused variable 'avg' [-Wunused-variable] double avg; ^~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/dx2mol.c:13: /builddir/build/BUILD/apbs/tools/mesh/dx2mol.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= /builddir/build/BUILD/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs/src/routines.c:2706:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ Scanning dependencies of target mergedx2 make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 81%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c /builddir/build/BUILD/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs/src/routines.c:2813:18: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->press*apolparm->sav) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->wcaEnergy))); ~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Linking C executable ../../../tools/bin/dx2mol cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../../../tools/bin/dx2mol -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 84%] Linking C executable ../../../tools/bin/analysis cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/analysis.dir/analysis.c.o -o ../../../tools/bin/analysis -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 84%] Built target dx2mol make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= Scanning dependencies of target dx2uhbd make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c:115:18: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration] while ((ch = getopt(argc, argv, "r:b:o:s:h")) != -1) { ^~~~~~ getsubopt /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c:95:32: warning: unused variable 'optopt' [-Wunused-variable] extern int optind, opterr, optopt; ^~~~~~ /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c:95:24: warning: unused variable 'opterr' [-Wunused-variable] extern int optind, opterr, optopt; ^~~~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs/tools/mesh/mergedx2.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 85%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c [ 85%] Built target analysis make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= Scanning dependencies of target del2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 86%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /builddir/build/BUILD/apbs/tools/mesh/del2dx.c /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:19:10: warning: unused variable 'avg' [-Wunused-variable] double avg; ^~~ /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:18:16: warning: unused variable 'k' [-Wunused-variable] int u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:18:13: warning: unused variable 'j' [-Wunused-variable] int u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:18:10: warning: unused variable 'i' [-Wunused-variable] int u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:18:7: warning: unused variable 'u' [-Wunused-variable] int u, i, j, k, nx, ny, nz; ^ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c:11: /builddir/build/BUILD/apbs/tools/mesh/dx2uhbd.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:37:57: warning: variable 'extent' set but not used [-Wunused-but-set-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:37:43: warning: unused variable 'xdata' [-Wunused-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:37:8: warning: unused variable 'val' [-Wunused-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:55:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igrid, 1, sizeof(int), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:68:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, 1, sizeof(char) * 10, pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(data, tot_grid, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:82:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&scale, 1, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/del2dx.c:85:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(oldmid, 3, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Linking C executable ../../../tools/bin/dx2uhbd cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../../../tools/bin/dx2uhbd -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 89%] Linking C executable ../../../tools/bin/del2dx cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/del2dx.dir/del2dx.c.o -o ../../../tools/bin/del2dx -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [ 90%] Linking C executable ../../../tools/bin/mergedx2 cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../../../tools/bin/mergedx2 -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 92%] Linking C executable ../../bin/apbs cd /builddir/build/BUILD/apbs/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs-bin.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/apbs-bin.dir/main.c.o CMakeFiles/apbs-bin.dir/routines.c.o -o ../../bin/apbs -Wl,-rpath,/builddir/build/BUILD/apbs/lib: -lm -lmaloc -lz -fopenmp ../../lib/libapbs.so.1 make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 92%] Built target mergedx2 make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend [ 92%] Built target dx2uhbd [ 92%] Built target del2dx make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend [ 92%] Built target apbs-bin make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/manip /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/manip /builddir/build/BUILD/apbs/build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/manip /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/manip /builddir/build/BUILD/apbs/build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= Scanning dependencies of target tensor2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' Scanning dependencies of target born make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 93%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c Scanning dependencies of target coulomb make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build [ 94%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /builddir/build/BUILD/apbs/build/tools/manip && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/born.dir/born.c.o -c /builddir/build/BUILD/apbs/tools/manip/born.c make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 96%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /builddir/build/BUILD/apbs/build/tools/manip && /usr/bin/cc -I/builddir/build/BUILD/apbs/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -fPIE -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /builddir/build/BUILD/apbs/tools/manip/coulomb.c /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:34:12: warning: unused variable 'index' [-Wunused-variable] int i,j,k,index,icol; ^~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:34:10: warning: unused variable 'k' [-Wunused-variable] int i,j,k,index,icol; ^ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:34:8: warning: unused variable 'j' [-Wunused-variable] int i,j,k,index,icol; ^ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:75:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:76:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:114:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:115:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:116:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/mesh/tensor2dx.c:117:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/tools/manip/coulomb.c: In function 'main': /builddir/build/BUILD/apbs/tools/manip/coulomb.c:20:12: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ /builddir/build/BUILD/apbs/tools/manip/coulomb.c:18:34: warning: unused variable 'disp' [-Wunused-variable] double *pos, energy, zmagic, disp[3], force[3]; ^~~~ In file included from /builddir/build/BUILD/apbs/src/apbs.h:89, from /builddir/build/BUILD/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs/tools/manip/coulomb.c: At top level: /builddir/build/BUILD/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 97%] Linking C executable ../../../tools/bin/tensor2dx cd /builddir/build/BUILD/apbs/build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../../../tools/bin/tensor2dx -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 97%] Built target tensor2dx [ 98%] Linking C executable ../../../tools/bin/coulomb cd /builddir/build/BUILD/apbs/build/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/coulomb.dir/coulomb.c.o -o ../../../tools/bin/coulomb -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp [100%] Linking C executable ../../../tools/bin/born cd /builddir/build/BUILD/apbs/build/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fstack-clash-protection -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/born.dir/born.c.o -o ../../../tools/bin/born -Wl,-rpath,/builddir/build/BUILD/apbs/lib: ../../../lib/libapbs.so.1 -lm -lmaloc -lz -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [100%] Built target coulomb make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [100%] Built target born make[1]: Leaving directory '/builddir/build/BUILD/apbs/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs/build/CMakeFiles 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.9TVz0P + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le ++ dirname /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le + cd apbs + rm -rf /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le + cd build + make install DESTDIR=/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le /usr/bin/cmake -H/builddir/build/BUILD/apbs -B/builddir/build/BUILD/apbs/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs/build/CMakeFiles /builddir/build/BUILD/apbs/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs/build' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/mg /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/mg /builddir/build/BUILD/apbs/build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'src/mg/CMakeFiles/apbs_mg.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 6%] Built target apbs_mg make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/generic /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/generic /builddir/build/BUILD/apbs/build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'src/generic/CMakeFiles/apbs_generic.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 25%] Built target apbs_generic make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src/pmgc /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src/pmgc /builddir/build/BUILD/apbs/build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 48%] Built target apbs_pmgc make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src /builddir/build/BUILD/apbs/build/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'src/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 50%] Built target apbs make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/src /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/src /builddir/build/BUILD/apbs/build/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'src/CMakeFiles/apbs-bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 53%] Built target apbs-bin make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/doc /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/doc /builddir/build/BUILD/apbs/build/doc/CMakeFiles/doc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' [ 55%] Generating documentation with Doxygen cd /builddir/build/BUILD/apbs/doc/programmer && /usr/bin/doxygen /builddir/build/BUILD/apbs/doc/programmer/Doxyfile warning: Tag `SYMBOL_CACHE_SIZE' at line 346 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1427 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1433 of file `/builddir/build/BUILD/apbs/doc/programmer/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: the dot tool could not be found at ../../../../../../../../../../Program Files (x86)/Graphviz 2.28/bin warning: tag INPUT: input source `../license/LICENSE.h' does not exist warning: source ../license/LICENSE.h is not a readable file or directory... skipping. /builddir/build/BUILD/apbs/src/fem/vfetk.c:2519: warning: More #endif's than #if's found. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/apbs/src Searching for files in directory /builddir/build/BUILD/apbs/src/config Searching for files in directory /builddir/build/BUILD/apbs/src/fem Searching for files in directory /builddir/build/BUILD/apbs/src/generic Searching for files in directory /builddir/build/BUILD/apbs/src/mg Searching for files in directory /builddir/build/BUILD/apbs/src/pmgc Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/apbs/src/apbs.h... Parsing file /builddir/build/BUILD/apbs/src/apbs.h... Preprocessing /builddir/build/BUILD/apbs/src/apbscfg.h... Parsing file /builddir/build/BUILD/apbs/src/apbscfg.h... Preprocessing /builddir/build/BUILD/apbs/src/config/double_epsilon.c... Parsing file /builddir/build/BUILD/apbs/src/config/double_epsilon.c... Preprocessing /builddir/build/BUILD/apbs/src/config/embed_test.c... Parsing file /builddir/build/BUILD/apbs/src/config/embed_test.c... Preprocessing /builddir/build/BUILD/apbs/src/config/float_epsilon.c... Parsing file /builddir/build/BUILD/apbs/src/config/float_epsilon.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vcsm.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vcsm.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vcsm.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vcsm.h... Preprocessing /builddir/build/BUILD/apbs/src/fem/vfetk.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vfetk.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vfetk.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vfetk.h... Preprocessing /builddir/build/BUILD/apbs/src/fem/vpee.c... Parsing file /builddir/build/BUILD/apbs/src/fem/vpee.c... Preprocessing /builddir/build/BUILD/apbs/src/fem/vpee.h... Parsing file /builddir/build/BUILD/apbs/src/fem/vpee.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/apolparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/apolparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/apolparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/apolparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/femparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/femparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/femparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/femparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/mgparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/mgparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/mgparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/mgparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/nosh.c... Parsing file /builddir/build/BUILD/apbs/src/generic/nosh.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/nosh.h... Parsing file /builddir/build/BUILD/apbs/src/generic/nosh.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/pbeparm.c... Parsing file /builddir/build/BUILD/apbs/src/generic/pbeparm.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/pbeparm.h... Parsing file /builddir/build/BUILD/apbs/src/generic/pbeparm.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vacc.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vacc.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vacc.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vacc.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/valist.c... Parsing file /builddir/build/BUILD/apbs/src/generic/valist.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/valist.h... Parsing file /builddir/build/BUILD/apbs/src/generic/valist.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vatom.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vatom.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vatom.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vatom.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vcap.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vcap.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vcap.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vcap.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vclist.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vclist.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vclist.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vclist.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vgreen.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vgreen.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vgreen.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vgreen.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vhal.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vhal.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vmatrix.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vmatrix.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vparam.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vparam.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vparam.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vparam.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vpbe.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vpbe.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vpbe.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vpbe.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vstring.c... Parsing file /builddir/build/BUILD/apbs/src/generic/vstring.c... Preprocessing /builddir/build/BUILD/apbs/src/generic/vstring.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vstring.h... Preprocessing /builddir/build/BUILD/apbs/src/generic/vunit.h... Parsing file /builddir/build/BUILD/apbs/src/generic/vunit.h... Preprocessing /builddir/build/BUILD/apbs/src/main.c... Parsing file /builddir/build/BUILD/apbs/src/main.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vgrid.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vgrid.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vgrid.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vgrid.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vmgrid.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vmgrid.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vmgrid.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vmgrid.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vopot.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vopot.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vopot.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vopot.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmg.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmg.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmg.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmg.h... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmgp.c... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmgp.c... Preprocessing /builddir/build/BUILD/apbs/src/mg/vpmgp.h... Parsing file /builddir/build/BUILD/apbs/src/mg/vpmgp.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildAd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildAd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildAd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildAd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildBd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildBd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildBd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildBd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildGd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildGd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildGd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildGd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildPd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildPd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/buildPd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/buildPd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/cgd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/cgd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/cgd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/cgd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/gsd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/gsd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/gsd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/gsd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/matvecd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/matvecd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/matvecd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/matvecd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgcsd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgcsd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgcsd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgdrvd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgfasd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgfasd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgsubd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mgsubd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mgsubd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mikpckd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mikpckd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mlinpckd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mypdec.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mypdec.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/mypdec.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/mypdec.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newdrvd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newdrvd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newdrvd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newtond.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newtond.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/newtond.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/newtond.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/powerd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/powerd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/powerd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/powerd.h... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/smoothd.c... Parsing file /builddir/build/BUILD/apbs/src/pmgc/smoothd.c... Preprocessing /builddir/build/BUILD/apbs/src/pmgc/smoothd.h... Parsing file /builddir/build/BUILD/apbs/src/pmgc/smoothd.h... Preprocessing /builddir/build/BUILD/apbs/src/routines.c... Parsing file /builddir/build/BUILD/apbs/src/routines.c... Preprocessing /builddir/build/BUILD/apbs/src/routines.h... Parsing file /builddir/build/BUILD/apbs/src/routines.h... Preprocessing /builddir/build/BUILD/apbs/doc/programmer/mainpage.h... Parsing file /builddir/build/BUILD/apbs/doc/programmer/mainpage.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file doc/programmer/mainpage.h... Generating code for file src/apbs.h... Generating code for file src/apbscfg.h... Generating code for file src/config/double_epsilon.c... Generating code for file src/config/embed_test.c... Generating code for file src/config/float_epsilon.c... Generating code for file src/fem/vcsm.c... Generating code for file src/fem/vcsm.h... Generating code for file src/fem/vfetk.c... Generating code for file src/fem/vfetk.h... Generating code for file src/fem/vpee.c... Generating code for file src/fem/vpee.h... Generating code for file src/generic/apolparm.c... Generating code for file src/generic/apolparm.h... Generating code for file src/generic/femparm.c... Generating code for file src/generic/femparm.h... Generating code for file src/generic/mgparm.c... Generating code for file src/generic/mgparm.h... Generating code for file src/generic/nosh.c... Generating code for file src/generic/nosh.h... Generating code for file src/generic/pbeparm.c... Generating code for file src/generic/pbeparm.h... Generating code for file src/generic/vacc.c... Generating code for file src/generic/vacc.h... Generating code for file src/generic/valist.c... Generating code for file src/generic/valist.h... Generating code for file src/generic/vatom.c... Generating code for file src/generic/vatom.h... Generating code for file src/generic/vcap.c... Generating code for file src/generic/vcap.h... Generating code for file src/generic/vclist.c... Generating code for file src/generic/vclist.h... Generating code for file src/generic/vgreen.c... Generating code for file src/generic/vgreen.h... Generating code for file src/generic/vhal.h... Generating code for file src/generic/vmatrix.h... Generating code for file src/generic/vparam.c... Generating code for file src/generic/vparam.h... Generating code for file src/generic/vpbe.c... Generating code for file src/generic/vpbe.h... Generating code for file src/generic/vstring.c... Generating code for file src/generic/vstring.h... Generating code for file src/generic/vunit.h... Generating code for file src/main.c... Generating code for file src/mg/vgrid.c... Generating code for file src/mg/vgrid.h... Generating code for file src/mg/vmgrid.c... Generating code for file src/mg/vmgrid.h... Generating code for file src/mg/vopot.c... Generating code for file src/mg/vopot.h... Generating code for file src/mg/vpmg.c... Generating code for file src/mg/vpmg.h... Generating code for file src/mg/vpmgp.c... Generating code for file src/mg/vpmgp.h... Generating code for file src/pmgc/b/builddir/build/BUILD/apbs/src/fem/vfetk.c:354: warning: Member polyEval(int numP, double p[], double c[][VMAXP], double xv[]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1528: warning: Member Vfetk_PDE_initElement(PDE *thee, int elementType, int chart, double tvx[][3], void *data) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1571: warning: Member Vfetk_PDE_initPoint(PDE *thee, int pointType, int chart, double txq[], double tU[], double tdU[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1741: warning: Member Vfetk_PDE_DFu_wv(PDE *thee, int key, double W[], double dW[][VAPBS_DIM], double V[], double dV[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1902: warning: Member Vfetk_PDE_bisectEdge(int dim, int dimII, int edgeType, int chart[], double vx[][3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1912: warning: Member Vfetk_PDE_mapBoundary(int dim, int dimII, int vertexType, int chart, double vx[3]) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1917: warning: Member Vfetk_PDE_markSimplex(int dim, int dimII, int simplexType, int faceType[VAPBS_NVS], int vertexType[VAPBS_NVS], int chart[], double vx[][3], void *simplex) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:1998: warning: Member Vfetk_PDE_oneChart(int dim, int dimII, int objType, int chart[], double vx[][3], int dimV) (function) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:86: warning: Member var (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:93: warning: Member diriCubeString (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:130: warning: Member neumCubeString (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:366: warning: Member dim_2DP1 (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:386: warning: Member lgr_2DP1[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:395: warning: Member lgr_2DP1x[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:402: warning: Member lgr_2DP1y[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:409: warning: Member lgr_2DP1z[3][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:437: warning: Member dim_3DP1 (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:438: warning: Member lgr_3DP1[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:446: warning: Member lgr_3DP1x[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:454: warning: Member lgr_3DP1y[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:462: warning: Member lgr_3DP1z[VAPBS_NVS][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:476: warning: Member P_DEG (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:482: warning: Member numP (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:483: warning: Member c[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:484: warning: Member cx[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:485: warning: Member cy[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vfetk.c:486: warning: Member cz[VMAXP][VMAXP] (variable) of file vfetk.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:59: warning: Member Vpee_userDefined(Vpee *thee, SS *sm) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:62: warning: Member Vpee_ourSimp(Vpee *thee, SS *sm, int rcol) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:66: warning: Member Aprx_estNonlinResid(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:72: warning: Member Aprx_estLocalProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/fem/vpee.c:77: warning: Member Aprx_estDualProblem(Aprx *thee, SS *sm, Bvec *u, Bvec *ud, Bvec *f) (function) of file vpee.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:237: warning: Member APOLparm_parseGRID(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:268: warning: Member APOLparm_parseMOL(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:287: warning: Member APOLparm_parseSRFM(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:309: warning: Member APOLparm_parseSRAD(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:328: warning: Member APOLparm_parseSWIN(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:347: warning: Member APOLparm_parseTEMP(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:366: warning: Member APOLparm_parseGAMMA(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:385: warning: Member APOLparm_parseCALCENERGY(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:438: warning: Member APOLparm_parseCALCFORCE(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:491: warning: Member APOLparm_parseBCONC(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:510: warning: Member APOLparm_parseSDENS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:529: warning: Member APOLparm_parseDPOS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/apolparm.c:558: warning: Member APOLparm_parsePRESS(APOLparm *thee, Vio *sock) (function) of file apolparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:196: warning: Member FEMparm_parseDOMAINLENGTH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:221: warning: Member FEMparm_parseETOL(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:244: warning: Member FEMparm_parseEKEY(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:276: warning: Member FEMparm_parseAKEYPRE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:303: warning: Member FEMparm_parseAKEYSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:333: warning: Member FEMparm_parseTARGETNUM(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:352: warning: Member FEMparm_parseTARGETRES(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:372: warning: Member FEMparm_parseMAXSOLVE(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:391: warning: Member FEMparm_parseMAXVERT(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/femparm.c:411: warning: Member FEMparm_parseUSEMESH(FEMparm *thee, Vio *sock) (function) of file femparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:415: warning: Member MGparm_parseDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:446: warning: Member MGparm_parseCHGM(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:497: warning: Member MGparm_parseNLEV(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:516: warning: Member MGparm_parseETOL(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:539: warning: Member MGparm_parseGRID(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:570: warning: Member MGparm_parseGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:601: warning: Member MGparm_parseGAMMA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:616: warning: Member MGparm_parseGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:668: warning: Member MGparm_parseCGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:699: warning: Member MGparm_parseFGLEN(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:730: warning: Member MGparm_parseCGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:782: warning: Member MGparm_parseFGCENT(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:834: warning: Member MGparm_parsePDIME(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:872: warning: Member MGparm_parseOFRAC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:892: warning: Member MGparm_parseASYNC(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/mgparm.c:912: warning: Member MGparm_parseUSEAQUA(MGparm *thee, Vio *sock) (function) of file mgparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:62: warning: Member NOsh_parseREAD(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:66: warning: Member NOsh_parsePRINT(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:70: warning: Member NOsh_parseELEC(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:75: warning: Member NOsh_parseAPOLAR(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:80: warning: Member NOsh_parseFEM(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:86: warning: Member NOsh_parseMG(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:92: warning: Member NOsh_parseAPOL(NOsh *thee, Vio *sock, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:98: warning: Member NOsh_setupCalcMG(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:103: warning: Member NOsh_setupCalcMGAUTO(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:108: warning: Member NOsh_setupCalcMGMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:113: warning: Member NOsh_setupCalcMGPARA(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:118: warning: Member NOsh_setupCalcFEM(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:123: warning: Member NOsh_setupCalcFEMANUAL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:128: warning: Member NOsh_setupCalcAPOL(NOsh *thee, NOsh_calc *elec) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:491: warning: Member NOsh_parseREAD_MOL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:568: warning: Member NOsh_parseREAD_PARM(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:632: warning: Member NOsh_parseREAD_DIEL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:683: warning: Member NOsh_parseREAD_KAPPA(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:726: warning: Member NOsh_parseREAD_POTENTIAL(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:769: warning: Member NOsh_parseREAD_CHARGE(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/nosh.c:812: warning: Member NOsh_parseREAD_MESH(NOsh *thee, Vio *sock) (function) of file nosh.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:87: warning: Member PBEparm_getzmem(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:91: warning: Member PBEparm_getLmem(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:95: warning: Member PBEparm_getmembraneDiel(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:99: warning: Member PBEparm_getmemv(PBEparm *thee) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:368: warning: Member PBEparm_parseLPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:375: warning: Member PBEparm_parseNPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:382: warning: Member PBEparm_parseMOL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:401: warning: Member PBEparm_parseLRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:408: warning: Member PBEparm_parseNRPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:415: warning: Member PBEparm_parseSMPBE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:474: warning: Member PBEparm_parseBCFL(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:555: warning: Member PBEparm_parseION(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:652: warning: Member PBEparm_parsePDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:671: warning: Member PBEparm_parseSDENS(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:690: warning: Member PBEparm_parseSDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:709: warning: Member PBEparm_parseSRFM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:780: warning: Member PBEparm_parseSRAD(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:799: warning: Member PBEparm_parseSWIN(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:818: warning: Member PBEparm_parseTEMP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:837: warning: Member PBEparm_parseUSEMAP(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:895: warning: Member PBEparm_parseCALCENERGY(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:948: warning: Member PBEparm_parseCALCFORCE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1005: warning: Member PBEparm_parseZMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1025: warning: Member PBEparm_parseLMEM(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1044: warning: Member PBEparm_parseMDIE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1063: warning: Member PBEparm_parseMEMV(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1084: warning: Member PBEparm_parseWRITE(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/pbeparm.c:1169: warning: Member PBEparm_parseWRITEMAT(PBEparm *thee, Vio *sock) (function) of file pbeparm.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:277: warning: Member Vacc_vdwAcc(Vacc *thee, double center[3]) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:307: warning: Member Vacc_ivdwAcc(Vacc *thee, double center[3], double radius) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:679: warning: Member Vacc_writeGMV(Vacc *thee, double radius, int meth, Gem *gm, char *iodev, char *iofmt, char *iohost, char *iofile) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:1264: warning: Member Vacc_SASAPos(Vacc *thee, double radius) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:1289: warning: Member Vacc_atomSASAPos(Vacc *thee, double radius, Vatom *atom, int mode) (function) of file vacc.c is not documented. /builddir/build/BUILD/apbs/src/generic/vacc.c:80: warning: The following parameters of ivdwAccExclus(Vacc *thee, double center[3], double radius, int atomID) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/generic/vacc.c:493: warning: The following parameters of splineAcc(Vacc *thee, double center[VAPBS_DIM], double win, double infrad, VclistCell *cell) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/generic/valist.c:186: warning: Member Valist_readPDBSerial(Valist *thee, Vio *sock, int *serial) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:206: warning: Member Valist_readPDBAtomName(Valist *thee, Vio *sock, char atomName[VMAX_ARGLEN]) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:224: warning: Member Valist_readPDBResidueName(Valist *thee, Vio *sock, char resName[VMAX_ARGLEN]) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:242: warning: Member Valist_readPDBResidueNumber(Valist *thee, Vio *sock, int *resSeq) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:298: warning: Member Valist_readPDBAtomCoord(Valist *thee, Vio *sock, double *coord) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:316: warning: Member Valist_readPDBChargeRadius(Valist *thee, Vio *sock, double *charge, double *radius) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:344: warning: Member Valist_readPDB_throughXYZ(Valist *thee, Vio *sock, int *serial, char atomName[VMAX_ARGLEN], char resName[VMAX_ARGLEN], int *resSeq, double *x, double *y, double *z) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:424: warning: Member Valist_getAtomStorage(Valist *thee, Vatom **plist, int *pnlist, int *pnatoms) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:480: warning: Member Valist_setAtomArray(Valist *thee, Vatom **plist, int nlist, int natoms) (function) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:60: warning: Member Valist_whiteChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:61: warning: Member Valist_commChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/valist.c:62: warning: Member Valist_xmlwhiteChars (variable) of file valist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:128: warning: Member VCLIST_INFLATE (macro definition) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:90: warning: Member Vclist_getMolDims(Vclist *thee, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM], double *r_max) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:125: warning: Member Vclist_setupGrid(Vclist *thee) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:174: warning: Member Vclist_storeParms(Vclist *thee, Valist *alist, double max_radius, int npts[VAPBS_DIM], Vclist_DomainMode mode, double lower_corner[VAPBS_DIM], double upper_corner[VAPBS_DIM]) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:231: warning: Member Vclist_gridSpan(Vclist *thee, Vatom *atom, int imin[VAPBS_DIM], int imax[VAPBS_DIM]) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:262: warning: Member Vclist_arrayIndex(Vclist *thee, int i, int j, int k) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vclist.c:270: warning: Member Vclist_assignAtoms(Vclist *thee) (function) of file vclist.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:117: warning: Member treesetup(Vgreen *thee) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:126: warning: Member treecleanup(Vgreen *thee) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vgreen.c:135: warning: Member treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, double *qtar, int numtars, double *tpengtar, double *x, double *y, double *z, double *q, int numpars, double *fx, double *fy, double *fz, int iflag, int farrdim, int arrdim) (function) of file vgreen.c is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:465: warning: Member MAX_HASH_DIM (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:579: warning: Member OS_SEP_STR (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:580: warning: Member OS_SEP_CHAR (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:607: warning: Member ANNOUNCE_FUNCTION (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:608: warning: Member WARN_UNTESTED (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:609: warning: Member WARN_PARTTESTED (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:660: warning: Member VCHANNELEDMESSAGE0(channel, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:665: warning: Member VCHANNELEDMESSAGE1(channel, msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:672: warning: Member VCHANNELEDMESSAGE2(channel, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:679: warning: Member VCHANNELEDMESSAGE3(channel, msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:686: warning: Member VMESSAGE0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:687: warning: Member VMESSAGE1(msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:688: warning: Member VMESSAGE2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:689: warning: Member VMESSAGE3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:691: warning: Member VERRMSG0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:692: warning: Member VERRMSG1(msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:693: warning: Member VERRMSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:694: warning: Member VERRMSG3(msg, arg0, arg1, arg2) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:738: warning: Member VASSERT_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:748: warning: Member VASSERT_MSG1(cnd, msg, arg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:760: warning: Member VASSERT_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:832: warning: Member VWARN_MSG0(cnd, msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:845: warning: Member VWARN_MSG1(cnd, msg, arg0) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:860: warning: Member VWARN_MSG2(cnd, msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:906: warning: Member VABORT_MSG0(msg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:914: warning: Member VABORT_MSG1(msg, arg) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:924: warning: Member VABORT_MSG2(msg, arg0, arg1) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:951: warning: Member PRINT_INT(expr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:952: warning: Member PRINT_DBL(expr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:955: warning: Member VMALLOC(vmem, n, type) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:957: warning: Member VFREE(vmem, n, type, ptr) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:959: warning: Member VFILL(vec, n, val) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:966: warning: Member VCOPY(srcvec, dstvec, i, n) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:975: warning: Member VAT(array, i) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:976: warning: Member RAT(array, i) (macro definition) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member Vrc_Codes (typedef) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member Vsol_Meth (typedef) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:973: warning: Member wrap_text(char *str, int right_margin, int left_padding) (function) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vhal.h:60: warning: Member data (variable) of file vhal.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:64: warning: Member MAT2(mat, dx, dy) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:68: warning: Member RAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:71: warning: Member VAT2(mat, x, y) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:76: warning: Member MAT3(mat, dx, dy, dz) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:81: warning: Member RAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vmatrix.h:84: warning: Member VAT3(mat, x, y, z) (macro definition) of file vmatrix.h is not documented. /builddir/build/BUILD/apbs/src/generic/vpbe.c:62: warning: Member MAX_SPLINE_WINDOW (macro definition) of file vpbe.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:66: warning: Member IJK(i, j, k) (macro definition) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:68: warning: Member MCwhiteChars (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:69: warning: Member MCcommChars (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:70: warning: Member Vcompare (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vgrid.c:71: warning: Member Vprecision[26] (variable) of file vgrid.c is not documented. /builddir/build/BUILD/apbs/src/mg/vopot.c:113: warning: Member IJK(i, j, k) (macro definition) of file vopot.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:1406: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:2833: warning: Member bcCalcOrig(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3125: warning: Member gridPointIsValid(int i, int j, int k, int nx, int ny, int nz) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3308: warning: Member packAtoms(double *ax, double *ay, double *az, double *charge, double *size, Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3333: warning: Member packUnpack(int nx, int ny, int nz, int ngrid, double *gx, double *gy, double *gz, double *value, Vpmg *thee, int pack) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3402: warning: Member bcflnew(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3592: warning: Member bcfl_sdh(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3858: warning: Member bcfl_mdh(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:3985: warning: Member bcfl_mem(double zmem, double L, double eps_m, double eps_w, double V, double xkappa, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:4164: warning: Member bcfl_map(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:6674: warning: Member markFrac(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *xarray, double *yarray, double *zarray) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:10250: warning: Member fillcoPermanentInduced(Vpmg *thee) (function) of file vpmg.c is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.c:2569: warning: The following parameters of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) are not documented: parameter 'size' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1359: warning: argument 'hz' of command @param is not found in the argument list of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) /builddir/build/BUILD/apbs/src/mg/vpmg.c:6839: warning: The following parameters of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) are not documented: parameter 'rtot' parameter 'hzed' /builddir/build/BUILD/apbs/src/mg/vpmg.c:3482: warning: The following parameters of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) are not documented: parameter 'r' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6301: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6438: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6551: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1153: warning: The following parameters of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1709: warning: The following parameters of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1866: warning: The following parameters of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.c:1898: warning: The following parameters of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) are not documented: parameter 'srfm' /builddir/build/BUILD/apbs/src/mg/vpmg.c:6888: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented: parameter 'thee' parameter 'solution' /builddir/build/BUILD/apbs/src/mg/vpmg.h:105: warning: Member VPMGMAXPART (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1392: warning: Member VCUB(x) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1393: warning: Member VLOG(x) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1395: warning: Member IJK(i, j, k) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1396: warning: Member IJKx(j, k, i) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1397: warning: Member IJKy(i, k, j) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1398: warning: Member IJKz(i, j, k) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1399: warning: Member VFCHI(iint, iflt) (macro definition) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1385: warning: Member Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag) (function) of file vpmg.h is not documented. /builddir/build/BUILD/apbs/src/mg/vpmg.h:1058: warning: The following parameters of bcfl1(double size, double *apos, double charge, double xkappa, double pre1, double *gxcf, double *gycf, double *gzcf, double *xf, double *yf, double *zf, int nx, int ny, int nz) are not documented: parameter 'size' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1364: warning: The following parameters of markSphere(double rtot, double *tpos, int nx, int ny, int nz, double hx, double hy, double hzed, double xmin, double ymin, double zmin, double *array, double markVal) are not documented: parameter 'rtot' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1109: warning: The following parameters of multipolebc(double r, double kappa, double eps_p, double eps_w, double rad, double tsr[3]) are not documented: parameter 'r' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1317: warning: The following parameters of qfForceSpline1(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1327: warning: The following parameters of qfForceSpline2(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1337: warning: The following parameters of qfForceSpline4(Vpmg *thee, double *force, int atomID) are not documented: parameter 'thee' parameter 'force' /builddir/build/BUILD/apbs/src/mg/vpmg.h:998: warning: The following parameters of Vpmg_polarizEnergy(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1009: warning: The following parameters of Vpmg_qfEnergyPoint(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1020: warning: The following parameters of Vpmg_qfEnergyVolume(Vpmg *thee, int extFlag) are not documented: parameter 'thee' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1031: warning: The following parameters of Vpmg_splineSelect(int srfm, Vacc *acc, double *gpos, double win, double infrad, Vatom *atom, double *force) are not documented: parameter 'srfm' /builddir/build/BUILD/apbs/src/mg/vpmg.h:1351: warning: The following parameters of zlapSolve(Vpmg *thee, double **solution, double **source, double **work1) are not documented: parameter 'thee' parameter 'solution' /builddir/build/BUILD/apbs/src/mg/vpmgp.c:294: warning: Member coarsenThis(int nOld) (function) of file vpmgp.c is not documented. /builddir/build/BUILD/apbs/src/routines.h:499: warning: The following parameters of energyAPOL(APOLparm *apolparm, double sasa, double sav, double atomsasa[], double atomwcaEnergy[], int numatoms) are not documented: parameter 'apolparm' /builddir/build/BUILD/apbs/src/routines.h:596: warning: The following parameters of killFE(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vfetk *fetk[NOSH_MAXCALC], Gem *gem[NOSH_MAXMOL]) are not documented: parameter 'nosh' /builddir/build/BUILD/apbs/src/routines.h:248: warning: The following parameters of killMG(NOsh *nosh, Vpbe *pbe[NOSH_MAXCALC], Vpmgp *pmgp[NOSH_MAXCALC], Vpmg *pmg[NOSH_MAXCALC]) are not documented: parameter 'nosh' /builddir/build/BUILD/apbs/src/routines.c:768: warning: argument 'charge' of command @param is not found in the argument list of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:195: warning: The following parameters of loadChargeMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.c:573: warning: argument 'kappa' of command @param is not found in the argument list of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:161: warning: The following parameters of loadKappaMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.c:677: warning: argument 'pot' of command @param is not found in the argument list of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) /builddir/build/BUILD/apbs/src/routines.h:178: warning: The following parameters of loadPotMaps(NOsh *nosh, Vgrid *map[NOSH_MAXMOL]) are not documented: parameter 'map' /builddir/build/BUILD/apbs/src/routines.h:604: warning: argument 'nosh' of command @param is not found in the argument list of preRefineFE(int i, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC]) /builddir/build/BUILD/apbs/src/routines.h:480: warning: The following parameters of printApolForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:431: warning: The following parameters of printElecEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:467: warning: The following parameters of printElecForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:418: warning: The following parameters of printEnergy(Vcom *com, NOsh *nosh, double totEnergy[NOSH_MAXCALC], int iprint) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.h:454: warning: The following parameters of printForce(Vcom *com, NOsh *nosh, int nforce[NOSH_MAXCALC], AtomForce *atomForce[NOSH_MAXCALC], int i) are not documented: parameter 'com' /builddir/build/BUILD/apbs/src/routines.c:3953: warning: argument 'i' of command @param is not found in the argument list of solveFE(int icalc, PBEparm *pbeparm, FEMparm *feparm, Vfetk *fetk[NOSH_MAXCALC]) sh: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: dvips: command not found error: Problems running dvips. Check your installation! sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.png"' sh: dot: command not found sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.png"' sh: dot: command not found sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.png"' sh: dot: command not found sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/graph_legend.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/graph_legend.png"' error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.png"' sh: dot: command not found error: Problems running dot: exit code=127, command='dot', arguments='"/builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.dot" -Tpng -o "/builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.png"' uildAd.c... Generating code for file src/pmgc/buildAd.h... Generating code for file src/pmgc/buildBd.c... Generating code for file src/pmgc/buildBd.h... Generating code for file src/pmgc/buildGd.c... Generating code for file src/pmgc/buildGd.h... Generating code for file src/pmgc/buildPd.c... Generating code for file src/pmgc/buildPd.h... Generating code for file src/pmgc/cgd.c... Generating code for file src/pmgc/cgd.h... Generating code for file src/pmgc/gsd.c... Generating code for file src/pmgc/gsd.h... Generating code for file src/pmgc/matvecd.c... Generating code for file src/pmgc/matvecd.h... Generating code for file src/pmgc/mgcsd.c... Generating code for file src/pmgc/mgcsd.h... Generating code for file src/pmgc/mgdrvd.c... Generating code for file src/pmgc/mgdrvd.h... Generating code for file src/pmgc/mgfasd.c... Generating code for file src/pmgc/mgfasd.h... Generating code for file src/pmgc/mgsubd.c... Generating code for file src/pmgc/mgsubd.h... Generating code for file src/pmgc/mikpckd.c... Generating code for file src/pmgc/mikpckd.h... Generating code for file src/pmgc/mlinpckd.c... Generating code for file src/pmgc/mlinpckd.h... Generating code for file src/pmgc/mypdec.c... Generating code for file src/pmgc/mypdec.h... Generating code for file src/pmgc/newdrvd.c... Generating code for file src/pmgc/newdrvd.h... Generating code for file src/pmgc/newtond.c... Generating code for file src/pmgc/newtond.h... Generating code for file src/pmgc/powerd.c... Generating code for file src/pmgc/powerd.h... Generating code for file src/pmgc/smoothd.c... Generating code for file src/pmgc/smoothd.h... Generating code for file src/routines.c... Generating code for file src/routines.h... Generating file documentation... Generating docs for file src/apbs.h... Generating docs for file src/fem/vcsm.c... Generating docs for file src/fem/vcsm.h... Generating docs for file src/fem/vfetk.c... Generating docs for file src/fem/vfetk.h... Generating docs for file src/fem/vpee.c... Generating docs for file src/fem/vpee.h... Generating docs for file src/generic/apolparm.c... Generating docs for file src/generic/femparm.c... Generating docs for file src/generic/femparm.h... Generating docs for file src/generic/mgparm.c... Generating docs for file src/generic/mgparm.h... Generating docs for file src/generic/nosh.c... Generating docs for file src/generic/nosh.h... Generating docs for file src/generic/pbeparm.c... Generating docs for file src/generic/pbeparm.h... Generating docs for file src/generic/vacc.c... Generating docs for file src/generic/vacc.h... Generating docs for file src/generic/valist.c... Generating docs for file src/generic/valist.h... Generating docs for file src/generic/vatom.c... Generating docs for file src/generic/vatom.h... Generating docs for file src/generic/vcap.c... Generating docs for file src/generic/vcap.h... Generating docs for file src/generic/vclist.c... Generating docs for file src/generic/vclist.h... Generating docs for file src/generic/vgreen.c... Generating docs for file src/generic/vgreen.h... Generating docs for file src/generic/vhal.h... Generating docs for file src/generic/vmatrix.h... Generating docs for file src/generic/vparam.c... Generating docs for file src/generic/vparam.h... Generating docs for file src/generic/vpbe.c... Generating docs for file src/generic/vpbe.h... Generating docs for file src/generic/vstring.c... Generating docs for file src/generic/vstring.h... Generating docs for file src/generic/vunit.h... Generating docs for file src/main.c... Generating docs for file src/mg/vgrid.c... Generating docs for file src/mg/vgrid.h... Generating docs for file src/mg/vmgrid.c... Generating docs for file src/mg/vmgrid.h... Generating docs for file src/mg/vopot.c... Generating docs for file src/mg/vopot.h... Generating docs for file src/mg/vpmg.c... Generating docs for file src/mg/vpmg.h... Generating docs for file src/mg/vpmgp.c... Generating docs for file src/mg/vpmgp.h... Generating docs for file src/routines.c... Generating docs for file src/routines.h... Generating page documentation... Generating docs for page deprecated... Generating docs for page bug... Generating group documentation... Generating class documentation... Generating docs for compound AtomForce... Generating docs for compound sAPOLparm... Generating docs for compound sFEMparm... Generating docs for compound sMGparm... Generating docs for compound sNOsh... Generating docs for compound sNOsh_calc... Generating docs for compound sPBEparm... Generating docs for compound sVacc... Generating docs for compound sVaccSurf... Generating docs for compound sValist... Generating docs for compound sVatom... Generating docs for compound sVclist... Generating docs for compound sVclistCell... Generating docs for compound sVcsm... Generating docs for compound sVfetk... Generating docs for compound sVfetk_LocalVar... Generating docs for compound sVgreen... Generating docs for compound sVgrid... Generating docs for compound sVmgrid... Generating docs for compound sVopot... Generating docs for compound sVparam_AtomData... Generating docs for compound sVpbe... Generating docs for compound sVpee... Generating docs for compound sVpmg... Generating docs for compound sVpmgp... Generating docs for compound Vparam... Generating docs for compound Vparam_ResData... Generating namespace index... Generating graph info page... Generating directory documentation... Generating dependency graph for directory src/fem Generating dependency graph for directory src/mg Generating dependency graph for directory src/pmgc Generating dependency graph for directory src Generating bitmaps for formulas in HTML... Generating image form_0.png for formula Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running dot... Generating dot graphs using 5 parallel threads... Running dot for graph 1/79 Running dot for graph 2/79 Running dot for graph 3/79 Running dot for graph 4/79 Running dot for graph 5/79 Running dot for graph 6/79 Running dot for graph 7/79 Running dot for graph 8/79 Running dot for graph 9/79 Running dot for graph 10/79 Running dot for graph 11/79 Running dot for graph 12/79 Running dot for graph 13/79 Running dot for graph 14/79 Running dot for graph 15/79 Running dot for graph 16/79 Running dot for graph 17/79 Running dot for graph 18/79 Running dot for graph 19/79 Running dot for graph 20/79 Running dot for graph 21/79 Running dot for graph 22/79 Running dot for graph 23/79 Running dot for graph 24/79 Running dot for graph 25/79 Running dot for graph 26/79 Running dot for graph 27/79 Running dot for graph 28/79 Running dot for graph 29/79 Running dot for graph 30/79 Running dot for graph 31/79 Running dot for graph 32/79 Running dot for graph 33/79 Running dot for graph 34/79 Running dot for graph 35/79 Running dot for graph 36/79 Running dot for graph 37/79 Running dot for graph 38/79 Running dot for graph 39/79 Running dot for graph 40/79 Running dot for graph 41/79 Running dot for graph 42/79 Running dot for graph 43/79 Running dot for graph 44/79 Running dot for graph 45/79 Running dot for graph 46/79 Running dot for graph 47/79 Running dot for graph 48/79 Running dot for graph 49/79 Running dot for graph 50/79 Running dot for graph 51/79 Running dot for graph 52/79 Running dot for graph 53/79 Running dot for graph 54/79 Running dot for graph 55/79 Running dot for graph 56/79 Running dot for graph 57/79 Running dot for graph 58/79 Running dot for graph 59/79 Running dot for graph 60/79 Running dot for graph 61/79 Running dot for graph 62/79 Running dot for graph 63/79 Running dot for graph 64/79 Running dot for graph 65/79 Running dot for graph 66/79 Running dot for graph 67/79 Running dot for graph 68/79 Running dot for graph 69/79 Running dot for graph 70/79 Runnerror: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apbs_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcsm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vfetk_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpee_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/apolparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/femparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/mgparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/nosh_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/pbeparm_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vacc_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/valist_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vatom_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vcap_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vclist_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgreen_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vhal_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmatrix_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vparam_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpbe_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vstring_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vunit_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/main_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vgrid_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vmgrid_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vopot_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmg_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/vpmgp_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8c__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/routines_8h__dep__incl.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_325c623946aaadef5114ca9e069898d6_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_1d197ef0d9947f4cc1ac44e7f59e2b57_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_e7eac49c1a1228b34aea87d37b387ddc_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. error: problems opening map file /builddir/build/BUILD/apbs/doc/programmer/html/dir_68267d1309a1af8e8297ef4c3efbcdba_dep.map for inclusion in the docs! If you installed Graphviz/dot after a previous failing run, try deleting the output directory and rerun doxygen. ing dot for graph 71/79 Running dot for graph 72/79 Running dot for graph 73/79 Running dot for graph 74/79 Running dot for graph 75/79 Running dot for graph 76/79 Running dot for graph 77/79 Running dot for graph 78/79 Running dot for graph 79/79 Patching output file 1/54 Patching output file 2/54 Patching output file 3/54 Patching output file 4/54 Patching output file 5/54 Patching output file 6/54 Patching output file 7/54 Patching output file 8/54 Patching output file 9/54 Patching output file 10/54 Patching output file 11/54 Patching output file 12/54 Patching output file 13/54 Patching output file 14/54 Patching output file 15/54 Patching output file 16/54 Patching output file 17/54 Patching output file 18/54 Patching output file 19/54 Patching output file 20/54 Patching output file 21/54 Patching output file 22/54 Patching output file 23/54 Patching output file 24/54 Patching output file 25/54 Patching output file 26/54 Patching output file 27/54 Patching output file 28/54 Patching output file 29/54 Patching output file 30/54 Patching output file 31/54 Patching output file 32/54 Patching output file 33/54 Patching output file 34/54 Patching output file 35/54 Patching output file 36/54 Patching output file 37/54 Patching output file 38/54 Patching output file 39/54 Patching output file 40/54 Patching output file 41/54 Patching output file 42/54 Patching output file 43/54 Patching output file 44/54 Patching output file 45/54 Patching output file 46/54 Patching output file 47/54 Patching output file 48/54 Patching output file 49/54 Patching output file 50/54 Patching output file 51/54 Patching output file 52/54 Patching output file 53/54 Patching output file 54/54 lookup cache used 2026/65536 hits=58645 misses=2092 finished... make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 55%] Built target doc make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/value.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 57%] Built target value make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mgmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 60%] Built target mgmesh make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dxmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 63%] Built target dxmath make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 65%] Built target mergedx make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/smooth.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 68%] Built target smooth make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/similarity.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 71%] Built target similarity make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/multivalue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 73%] Built target multivalue make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/benchmark.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 76%] Built target benchmark make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 78%] Built target uhbd_asc2bin make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 81%] Built target analysis make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2mol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 84%] Built target dx2mol make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 86%] Built target mergedx2 make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2uhbd.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 89%] Built target dx2uhbd make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/del2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 92%] Built target del2dx make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/mesh /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/mesh /builddir/build/BUILD/apbs/build/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/tensor2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 94%] Built target tensor2dx make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/manip /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/manip /builddir/build/BUILD/apbs/build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/born.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [ 97%] Built target born make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs/build' cd /builddir/build/BUILD/apbs/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs /builddir/build/BUILD/apbs/tools/manip /builddir/build/BUILD/apbs/build /builddir/build/BUILD/apbs/build/tools/manip /builddir/build/BUILD/apbs/build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs/build' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/coulomb.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs/build' [100%] Built target coulomb make[1]: Leaving directory '/builddir/build/BUILD/apbs/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/apbs/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/apbs/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/lib64/libapbs.so.1 -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/lib64/libapbs.so -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/apbs.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/routines.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/nosh.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/mgparm.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/femparm.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/pbeparm.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/apolparm.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vacc.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/valist.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vatom.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vpbe.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vcap.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vclist.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vstring.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vparam.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vgreen.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vmatrix.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/generic/vhal.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/buildAd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/buildBd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/buildGd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/buildPd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/cgd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/gsd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/matvecd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mgcsd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mgdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mgsubd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mikpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mlinpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mypdec.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/newtond.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/newdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/powerd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/smoothd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/pmgc/mgfasd.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/mg/vgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/mg/vmgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/mg/vopot.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/mg/vpmg.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/include/apbs/mg/vpmgp.h -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mgmesh -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mgmesh" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/smooth -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/smooth" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dxmath -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dxmath" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx2 -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx2" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/value -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/value" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/multivalue -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/multivalue" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/benchmark -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/benchmark" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/similarity -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/similarity" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/analysis -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/analysis" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2mol -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2mol" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2uhbd -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2uhbd" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/del2dx -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/del2dx" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/tensor2dx -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/tensor2dx" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/uhbd_asc2bin -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/uhbd_asc2bin" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/coulomb -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/coulomb" to "" -- Installing: /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/born -- Set runtime path of "/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/born" to "" + cd .. + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/coulomb + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-coulomb + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/born + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/born /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-born + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mgmesh + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mgmesh + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dxmath + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dxmath + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx2 + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mergedx2 + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mergedx + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/value + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/value /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-value + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/uhbd_asc2bin + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-uhbd_asc2bin + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/smooth + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/smooth /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-smooth + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2mol + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dx2mol + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2uhbd + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dx2uhbd + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/similarity + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/similarity /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-similarity + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/multivalue + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-multivalue + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/benchmark + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-benchmark + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/analysis + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/analysis /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-analysis + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/del2dx + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-del2dx + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/tensor2dx + mv /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-tensor2dx + for bin in /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} tools/manip/psize.py ++ basename tools/manip/psize.py + mv tools/manip/psize.py /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-psize.py + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.4-8.fc28 --unique-debug-suffix -1.4-8.fc28.ppc64le --unique-debug-src-base apbs-1.4-8.fc28.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/apbs extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/lib64/libapbs.so.1 extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-smooth extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dx2uhbd extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dx2mol extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-benchmark extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-value extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-similarity extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mgmesh extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-analysis extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-multivalue extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-uhbd_asc2bin extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-dxmath extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-del2dx extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/bin/apbs-mergedx2 /usr/lib/rpm/sepdebugcrcfix: Updated 19 CRC32s, 0 CRC32s did match. 4266 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: mangling shebang in ./usr/bin/apbs-psize.py from #!/usr/bin/env python to #!/usr/bin/python2. This will become an ERROR, fix it manually! Processing files: apbs-1.4-8.fc28.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9tfI9e + umask 022 + cd /builddir/build/BUILD + cd apbs + DOCDIR=/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs + cp -pr doc/license/LICENSE.txt /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs + cp -pr README /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs + cp -pr ChangeLog /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs + exit 0 Provides: apbs = 1.4-8.fc28 apbs(ppc-64) = 1.4-8.fc28 libapbs.so.1()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: apbs-tools-1.4-8.fc28.ppc64le Provides: apbs-tools = 1.4-8.fc28 apbs-tools(ppc-64) = 1.4-8.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python2 libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: apbs-devel-1.4-8.fc28.ppc64le Provides: apbs-devel = 1.4-8.fc28 apbs-devel(ppc-64) = 1.4-8.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) Processing files: apbs-doc-1.4-8.fc28.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dIH5tE + umask 022 + cd /builddir/build/BUILD + cd apbs + DOCDIR=/builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs-doc + cp -pr doc/programmer/html /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le/usr/share/doc/apbs-doc + exit 0 Provides: apbs-doc = 1.4-8.fc28 apbs-doc(ppc-64) = 1.4-8.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debugsource-1.4-8.fc28.ppc64le Provides: apbs-debugsource = 1.4-8.fc28 apbs-debugsource(ppc-64) = 1.4-8.fc28 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debuginfo-1.4-8.fc28.ppc64le Provides: apbs-debuginfo = 1.4-8.fc28 apbs-debuginfo(ppc-64) = 1.4-8.fc28 debuginfo(build-id) = d1ee41623122da2d1603a96ab3503f36432ecac8 debuginfo(build-id) = e903a45b31d6621b71ae076aa2264f37b902f1a0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(ppc-64) = 1.4-8.fc28 Processing files: apbs-tools-debuginfo-1.4-8.fc28.ppc64le Provides: apbs-tools-debuginfo = 1.4-8.fc28 apbs-tools-debuginfo(ppc-64) = 1.4-8.fc28 debuginfo(build-id) = 0e1aeaf86604d04ff1f51fd3617c8366d217bc66 debuginfo(build-id) = 0f82116971fd85aaed659cb7f2f2dc28e5ff65b3 debuginfo(build-id) = 1690c3bbb892f881bf057ccd823f72d4d07d10f9 debuginfo(build-id) = 24917aa8cf06f196f3b9d08dc242738defdea83b debuginfo(build-id) = 31c16119d349e27b25f0f3ad84115ebbb728c03e debuginfo(build-id) = 49c6f29be93173fbe81a0515204e6ab17f5ef526 debuginfo(build-id) = 54bcc34fa6e304a77d3ded154f59480967518350 debuginfo(build-id) = 98e664ddfda6ca01192672b693b8bc56f8783ac4 debuginfo(build-id) = 99bedc21fa3c844b75deca4780bfdfe94a305132 debuginfo(build-id) = a1eb096309d8eb3ba2b818e27431db1fd796dcc8 debuginfo(build-id) = bbe992b5a38febb6641e1cc1a7b20dbaec785bbb debuginfo(build-id) = c7c1f07f6a0238df0b9da08d98aaac286dfab835 debuginfo(build-id) = e2da7fcca6c507feae908394142e5a23457d4742 debuginfo(build-id) = e36a3c2142bbfd4c34f9cd8f0c21b430f757c897 debuginfo(build-id) = e9eab458fadd22edbcb43a51715d31d6150fa57a debuginfo(build-id) = ec20534de8e61680a35e221859db2c942757d0c6 debuginfo(build-id) = f16307bb0a3bb906099775d623b51ec4a14e4311 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(ppc-64) = 1.4-8.fc28 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le Wrote: /builddir/build/RPMS/apbs-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-tools-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-devel-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-doc-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-debugsource-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-debuginfo-1.4-8.fc28.ppc64le.rpm Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-1.4-8.fc28.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.emNM66 + umask 022 + cd /builddir/build/BUILD + cd apbs + rm -rf /builddir/build/BUILDROOT/apbs-1.4-8.fc28.ppc64le + exit 0 Child return code was: 0