Mock Version: 1.3.4 Mock Version: 1.3.4 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/R-gtools.spec'], chrootPath='/var/lib/mock/f29-build-12983431-948644/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/R-gtools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: armv7hl Building for target armv7hl Wrote: /builddir/build/SRPMS/R-gtools-3.8.1-2.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/R-gtools.spec'], chrootPath='/var/lib/mock/f29-build-12983431-948644/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/R-gtools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: armv7hl Building for target armv7hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.azpTXA + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gtools + /usr/bin/mkdir -p gtools + cd gtools + /usr/bin/gzip -dc /builddir/build/SOURCES/gtools_3.8.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.emk0r5 + umask 022 + cd /builddir/build/BUILD + cd gtools + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Kbj6CD + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm ++ dirname /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm + cd gtools + mkdir -p /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/lib/R/library gtools * installing *source* package 'gtools' ... ** package 'gtools' successfully unpacked and MD5 sums checked ** libs gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -c gtools_load.c -o gtools_load.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -c roman2int.c -o roman2int.o gcc -I"/usr/include/R" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=armv7-a -mfpu=vfpv3-d16 -mtune=generic-armv7-a -mabi=aapcs-linux -mfloat-abi=hard -c setTCPNoDelay.c -o setTCPNoDelay.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o gtools.so gtools_load.o roman2int.o setTCPNoDelay.o -L/usr/lib/R/lib -lR installing to /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/lib/R/library/gtools/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gtools' finding HTML links ... done ASCIIfy html ELISA html asc html Rd warning: /builddir/build/BUILD/gtools/gtools/man/asc.Rd:17: file link 'sapply' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/asc.Rd:39: file link 'charToRaw' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/asc.Rd:40: file link 'rawToChar' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/asc.Rd:41: file link 'as.raw' in package 'base' does not exist and so has been treated as a topic ask html badDend html baseOf html binsearch html capwords html checkRVersion html Rd warning: /builddir/build/BUILD/gtools/gtools/man/checkRVersion.Rd:35: file link 'R.Version' in package 'base' does not exist and so has been treated as a topic combinations html Rd warning: /builddir/build/BUILD/gtools/gtools/man/combinations.Rd:45: file link 'choose' in package 'base' does not exist and so has been treated as a topic defmacro html dirichlet html foldchange html getDependencies html gtools-defunct html gtools-deprecated html invalid html Rd warning: /builddir/build/BUILD/gtools/gtools/man/invalid.Rd:21: file link 'is.na' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/invalid.Rd:22: file link 'is.null' in package 'base' does not exist and so has been treated as a topic keywords html lastAdd html Rd warning: /builddir/build/BUILD/gtools/gtools/man/lastAdd.Rd:34: file link '.Last' in package 'base' does not exist and so has been treated as a topic loadedPackages html Rd warning: /builddir/build/BUILD/gtools/gtools/man/loadedPackages.Rd:29: file link 'loadedNamespaces' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/loadedPackages.Rd:30: file link 'packageVersion' in package 'utils' does not exist and so has been treated as a topic logit html mixedsort html na.replace html Rd warning: /builddir/build/BUILD/gtools/gtools/man/na.replace.Rd:29: file link 'is.na' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/gtools/gtools/man/na.replace.Rd:29: file link 'na.omit' in package 'stats' does not exist and so has been treated as a topic oddeven html Rd warning: /builddir/build/BUILD/gtools/gtools/man/oddeven.Rd:21: file link 'round' in package 'base' does not exist and so has been treated as a topic permute html quantcut html roman2int html Rd warning: /builddir/build/BUILD/gtools/gtools/man/roman2int.Rd:25: file link 'as.roman' in package 'utils' does not exist and so has been treated as a topic running html Rd warning: /builddir/build/BUILD/gtools/gtools/man/running.Rd:61: file link 'sapply' in package 'base' does not exist and so has been treated as a topic scat html setTCPNoDelay html smartbind html split_path html stars.pval html unByteCode html Rd warning: /builddir/build/BUILD/gtools/gtools/man/unByteCode.Rd:53: file link 'disassemble' in package 'compiler' does not exist and so has been treated as a topic ** building package indices ** testing if installed package can be loaded * DONE (gtools) + test -d gtools/src + cd gtools/src + rm -f gtools_load.o roman2int.o setTCPNoDelay.o gtools.so + rm -f /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/lib/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 3.8.1-2.fc29 --unique-debug-suffix -3.8.1-2.fc29.arm --unique-debug-src-base R-gtools-3.8.1-2.fc29.arm --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gtools extracting debug info from /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/lib/R/library/gtools/libs/gtools.so /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 10 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.DEwWcU + umask 022 + cd /builddir/build/BUILD + cd gtools + rm gtools/tests/test_setTCPNoDelay.R + /usr/bin/R CMD check gtools --no-examples * using log directory '/builddir/build/BUILD/gtools/gtools.Rcheck' * using R version 3.5.0 (2018-04-23) * using platform: armv7hl-redhat-linux-gnu (32-bit) * using session charset: ASCII * using option '--no-examples' * checking for file 'gtools/DESCRIPTION' ... OK * this is package 'gtools' version '3.8.1' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/bioc/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/bioc/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/annotation/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/data/annotation/src/contrib/PACKAGES' Warning: unable to access index for repository https://bioconductor.org/packages/3.7/data/experiment/src/contrib: cannot open URL 'https://bioconductor.org/packages/3.7/data/experiment/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'gtools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Found the following possibly unsafe calls: File 'gtools/R/unByteCode.R': unlockBinding(name, env = env) * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Unknown packages 'taxize', 'SGP', 'car', 'gplots' in Rd xrefs * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... SKIPPED * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'smartbind_Dates.R' Running 'smartbind_emptynames.R' Running 'test_binsearch.R' Running 'test_ddirichlet.R' Running 'test_mixedorder.R' OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See '/builddir/build/BUILD/gtools/gtools.Rcheck/00check.log' for details. + exit 0 Processing files: R-gtools-3.8.1-2.fc29.armv7hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.4qVMhL + umask 022 + cd /builddir/build/BUILD + cd gtools + DOCDIR=/builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/share/doc/R-gtools + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/share/doc/R-gtools + cp -pr gtools/ChangeLog /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm/usr/share/doc/R-gtools + exit 0 Provides: R-gtools = 3.8.1-2.fc29 R-gtools(armv7hl-32) = 3.8.1-2.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libR.so libc.so.6 libc.so.6(GLIBC_2.4) libgcc_s.so.1 libgcc_s.so.1(GCC_3.5) rtld(GNU_HASH) Processing files: R-gtools-debugsource-3.8.1-2.fc29.armv7hl Provides: R-gtools-debugsource = 3.8.1-2.fc29 R-gtools-debugsource(armv7hl-32) = 3.8.1-2.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-gtools-debuginfo-3.8.1-2.fc29.armv7hl Provides: R-gtools-debuginfo = 3.8.1-2.fc29 R-gtools-debuginfo(armv7hl-32) = 3.8.1-2.fc29 debuginfo(build-id) = 67b4b10e7b557dd18fd59c3bbfce844f15e37e46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-gtools-debugsource(armv7hl-32) = 3.8.1-2.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm Wrote: /builddir/build/RPMS/R-gtools-3.8.1-2.fc29.armv7hl.rpm Wrote: /builddir/build/RPMS/R-gtools-debugsource-3.8.1-2.fc29.armv7hl.rpm Wrote: /builddir/build/RPMS/R-gtools-debuginfo-3.8.1-2.fc29.armv7hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2uE7Kv + umask 022 + cd /builddir/build/BUILD + cd gtools + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-gtools-3.8.1-2.fc29.arm + exit 0 Child return code was: 0